NO19G01220, NO19G01220 (gene) Nannochloropsis oceanica

Overview
NameNO19G01220
Unique NameNO19G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1887
Alignment locationchr19:391025..392911 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna (Uracil-5-)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:391025..392911 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030697S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
GO:0008173RNA methyltransferase activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR011869TrmA_MeTrfase
IPR010280U5_MeTrfase_fam
Homology
BLAST of NO19G01220 vs. NCBI_GenBank
Match: EWM23648.1 (trna (uracil-5-)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 510.0 bits (1312), Expect = 1.100e-140
Identity = 310/636 (48.74%), Postives = 370/636 (58.18%), Query Frame = 0
Query:    9 EEDADGILLLQHDTLGTDLSYLCLDDYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLF---PCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAK------TEADEEGGNRA-----------HEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRK------EREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            E   + IL L  + LG DLSYL  +  S +QYE SLQ KV  LR +F PYWS   T+FRSPPVH+RLRAKFGIGRV+ +                       S  T A   +  KLCYLMWG D++ V ISSFPLASRRINDLMPRLL AL  GP++LRR LRAVNFLDTLAGDTLI+LMY+    EGGK   +   W  AA   +++ LG QVVGR K   + VDRAYV E F L    P SS  +SP    +  G      G   R         P  +S+  P PC     P+ILRYKQW+GAFSNPNG MA+HT+RWLCARADA+L   D  +       EADE G  R             EG GG G  +   D                     +           DLLEL+CGGGNHTVALSRKF+RVVGVEID+RLVA A+ENL LNG++N ++IQIPSE+F  E LG YRR+                 + PG+      G+ G +   +                    +F VVLVDPPR GLDRHTRK++S+YE ILYISC P S+LRDL+GE EE++ +S D+ + SLAGFGLV TH VVDMCVLDHFPGT HIE AVHL+RR
Sbjct:    5 EGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITE----------SARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEE--WVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASP-LPPYAPGTGGADTGRDPRGG-------PRRASAGVPHPC-----PSILRYKQWDGAFSNPNGCMALHTLRWLCARADAVLQRGDAPRGVQATGGEADERGRERQMEDGDREQQGDTEGRGGPGGCEGCVDVASGGEGRVCRERQGLRPRVCRPPPSGDKPPAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQXXXXXXXXXXXXXXXXMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDP--------SFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRR 607          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: XP_005854838.1 (trna (uracil-5-)-methyltransferase, partial [Nannochloropsis gaditana CCMP526] >EKU21518.1 trna (uracil-5-)-methyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 198.7 bits (504), Expect = 5.200e-47
Identity = 107/189 (56.61%), Postives = 125/189 (66.14%), Query Frame = 0
Query:    9 EEDADGILLLQHDTLGTDLSYLCLDDYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGG 198
            E   + IL+L  + LG DLSYL  +  S +QYE SLQ KV  LR +F PYWS   T+FRSPPVH+RLRAKFGIGRV+ +                       S  T A   +  KLCYLMWG D++PV ISSFPLASRRINDLMPRLL AL  GP++LRR LRAVNFLDTLAGDTLI+L+Y+    EGG
Sbjct:    5 EGRCEDILMLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCQPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITE----------SARTGAPQGSPGKLCYLMWGADKKPVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALIYETAWAEGG 183          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: XP_002500539.1 (predicted protein [Micromonas commoda] >ACO61797.1 predicted protein [Micromonas commoda])

HSP 1 Score: 179.1 bits (453), Expect = 4.300e-41
Identity = 176/638 (27.59%), Postives = 233/638 (36.52%), Query Frame = 0
Query:   33 DDYSHEQYEVSLQGKVQALRELFQPYWSSVL-----------------TVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDT--LAGDTLISLMYQVPLIE--------------------------GGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKG-RVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKE----RKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGF-GLVETHDVVDMCVLDHFPGTMHIEAAVHLRRRR 620
            D      Y  +L  KV  L  LF P                        VF SPP++ R R +F +                          E        +     +L Y MW   +  V I+ FP+A R I +LMP +L+  EA P  L  GL+A++FL +  + G  L++++Y  P+ E                          GG + G  GF          D     ++GRS+G ++V  D  +V E   L                         D  R                             LRY+Q EGAFSNPN  MA  T+ WLC  A                       E LGG  E                               H +  +   LLELY G GNHTVAL++ F  V  VE+   L   ARENL  NG+EN  ++  PSE       G  RRK+R +E    + A AA   G  +G K GD G+  E +                     + VVLVDPPR GLD  T  L+S+++ +LYISC P   L +        +   T +      G+ GL  THD+V   V DHFP T HIE      RRR
Sbjct:  648 DPVDASTYSAALDAKVAELERLFSPLMQQASIPILNAKGVDRSVSVRPEVFPSPPLNFRSRCRFQV-----------------MWEDAPVTAESTGITPGESVEPGRRLSYRMWNKGKPTVPITEFPMALREIEELMPAVLREAEAHP-ELGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWKMAAEGPRARLKAAMVDIRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIVVGDACHVFETLAL------------------------RDGRR-----------------------------LRYRQAEGAFSNPNSFMAESTLDWLCDCA------------------ATTVREALGGTSE-------------------------------HSAEAAPPSLLELYSGNGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLHSPSESV---ARGMLRRKKRHEEGRVGKAAMAAAATGAGDGSKRGD-GSGMEFDINA------------------YDVVLVDPPRAGLDPDTLDLVSRFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGLARTHDLVRFAVFDHFPYTRHIECGACFVRRR 1143          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_078085881.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Microbulbifer mangrovi])

HSP 1 Score: 168.7 bits (426), Expect = 5.800e-38
Identity = 156/593 (26.31%), Postives = 229/593 (38.62%), Query Frame = 0
Query:   30 LCLDDYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMW--GYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKF--RVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            + L   + + Y+  L  KV  LR  F P+ S    VF SPP H+RLRA+F + +                            EG         ++ Y M+  G  ++P  I  F + SRRIN LMP LL+A+     +LR+ L    FL TL+GD LI+L+Y  PL E          W + A   L+D LG  ++GRS+ + + +DR YV E   +                     +G+                                   +YKQ EG+F+ PNG +    I+W  AR+                            C E   G                                   DLLELYCG GN T+ L+ KF++V+  EI K  V  A+EN+  NG++N  I+++ SE+F   ++++  +RR                 ++G+ +                             ++F  VLVDPPR GLD  T  +I+++  ILYISC P + L +L+                      L +TH V    + D FP T H E+AV L RR
Sbjct:    1 MALHRVNTDDYQQQLDQKVDRLRGAFSPFTSLAPEVFPSPPSHYRLRAEFKMWQ----------------------------EG--------GRVDYAMYKQGEYKKPFVIQEFTVGSRRINALMPPLLEAINDSE-ILRKRLFCTEFLTTLSGDALITLIYHKPLDEA---------WEQEARA-LQDHLGVPILGRSRKQKLVLDRDYVIEKLEI---------------------DGRS---------------------------------YQYKQVEGSFTQPNGDICTSMIQW--ARS----------------------------CCEDTEG-----------------------------------DLLELYCGNGNFTIPLAEKFRKVLATEISKVSVNAAQENIAANGVDNLDIVRLSSEEFTQAIDKVRPFRR-----------------LKGVDL---------------------------ESYDFSTVLVDPPRAGLDADTCAMIARFPRILYISCNPQTQLENLE---------------------ELTKTHKVERFAIFDQFPYTDHTESAVLLVRR 362          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_010130808.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Microbulbifer agarilyticus])

HSP 1 Score: 161.0 bits (406), Expect = 1.200e-35
Identity = 149/591 (25.21%), Postives = 223/591 (37.73%), Query Frame = 0
Query:   30 LCLDDYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMW--GYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            + L   + ++Y+  L  KV  LRE + PY      VF SPP H+RLRA+F + +                                       ++ Y M+  G  ++P  I  F + SRRIN+LMP LL A+ A   +LR+ L    FL TL+GD LI+L+Y  PL         G  W E+    L++ LG  V+GRS+ + + ++R YV E   +                     +G+                                 + +YKQ EG+F+ PNG++    I W              AK+   + G  +A                                              + DLLELYCG GN T+ L+  F++ +  EI K  V  A+EN+  NG++N  I+++ SE+F  + + K R   R K+                                              ++F  VLVDPPR GLD+ T  +I ++  ILYISC P + L +L                       L +TH +    + D FP T H E+ V L R+
Sbjct:    1 MALHRVNTDEYQQQLDQKVARLREAYTPYTELAPEVFPSPPSHYRLRAEFKMWQ------------------------------------DGGRVDYAMYKQGEYKKPFVIQEFTVGSRRINELMPPLLDAINASE-ILRKRLFCTEFLTTLSGDALITLIYHKPL---------GDEW-ESEARALQELLGVPVLGRSRKQKLVLERDYVIEKLDI---------------------DGR---------------------------------VFQYKQVEGSFTQPNGEICRSMISW--------------AKSCCPQPGAEQA----------------------------------------------SGDLLELYCGNGNFTIPLASHFRKALATEISKVSVNAAQENIAANGVDNLAILRLSSEEF-TQAIDKLRPFRRLKD-----------------------------------------FDLDSYDFSTVLVDPPRAGLDQDTCAMIVRFPRILYISCNPETQLENLA---------------------ELTKTHRIERFAIFDQFPYTDHTESGVLLVRK 367          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_027021434.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Conchiformibius steedae])

HSP 1 Score: 159.8 bits (403), Expect = 2.700e-35
Identity = 155/587 (26.41%), Postives = 216/587 (36.80%), Query Frame = 0
Query:   37 HEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQRP-----VAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            H  Y   L  K   L+ L  P+ +    VF SPP H+R+RA+F I                                         ++CY M+   Q+      + +  FP A+  IN LMPRLL A+  G  VLR  L    FL TL+GD LI+L+Y   L         G  W  AA   L+D LG  ++GRS+G+ + + R +VTE+  +                        G+                                L Y+Q EG FS PN  +    + W          A+D A             + LGG                                          DLLELYCG GN TV LSR+F+RV+  E+ K  V  A+ NL  N  +N  + ++ +     EEL +    ER   R A         + + + D                           F+F  V VDPPR G+D  T KL++ +++ILYISC PHS+  +L+                      L  TH VV   + D FP T HIE  V+L+R+
Sbjct:    2 HSDYSAQLAEKTARLQNLLAPFDAPAPEVFASPPQHYRMRAEFRIWH------------------------------------DGDEICYAMFERGQKAATASLIRLQQFPAAAESINALMPRLLAAVR-GDAVLRERLYQCEFLATLSGDMLITLIYHKKL---------GDDWT-AAAQRLQDDLGIALIGRSRGQKIVLKRDFVTESLKV-----------------------NGE-------------------------------TLHYRQIEGGFSQPNALVCEKMLAW----------ASDCA-------------QNLGG------------------------------------------DLLELYCGNGNFTVPLSRRFRRVLATELSKTSVKAAQWNLATNSADNVQLARLSA-----EELAQAFAGERVFRRLAE--------QNIDLSD---------------------------FDFSTVFVDPPRAGVDSDTLKLLADFDNILYISCNPHSLADNLK---------------------QLCATHQVVRSALFDQFPFTEHIECGVYLQRK 361          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_077403755.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Microbulbifer agarilyticus] >AQQ67774.1 tRNA (uridine(54)-C5)-methyltransferase TrmA [Microbulbifer agarilyticus])

HSP 1 Score: 159.5 bits (402), Expect = 3.500e-35
Identity = 147/591 (24.87%), Postives = 223/591 (37.73%), Query Frame = 0
Query:   30 LCLDDYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMW--GYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            + L   + ++Y+  L  KV  LRE + PY      VF SPP H+R+RA+F + +                                       ++ Y M+  G  ++P  I  F + SRRIN+LMP LL A+ A   +LR+ L    FL TL+GD LI+L+Y  PL         G  W E+    L++ LG  ++GRS+ + + ++R YV E   +                     +G+                                   +YKQ EG+F+ PNG++    I W           A     +  E+                                                 K++ DLLELYCG GN T+ L+  F++V+  EI K  V  A+EN+  NG++N  I+++ SE+F  + + K R   R K+                                              ++F  VLVDPPR GLD+ T  +I+++  ILYISC P + L +L                       L +TH +    + D FP T H E+ V L R+
Sbjct:    1 MALHRVNTDEYQQQLDQKVARLREAYTPYTDLAPEVFPSPPSHYRMRAEFKMWQ------------------------------------DGGRVDYAMYKQGEYKKPFVIQEFTVGSRRINELMPPLLDAINASE-MLRKRLFCTEFLTTLSGDALITLIYHKPL---------GDEW-ESEARALQEQLGVPILGRSRKQKLVLERDYVIEKLDI---------------------DGRE---------------------------------YQYKQVEGSFTQPNGEICRSMISW-----------AKSCCPQTSED-------------------------------------------------KASGDLLELYCGNGNFTIPLAAHFRKVLATEISKVSVNAAQENIAANGVDNLAILRLSSEEF-TQAIDKVRPFRRLKD-----------------------------------------FDLDSYDFSTVLVDPPRAGLDQDTCAMIARFPKILYISCNPETQLENLA---------------------ELTKTHRIERFAIFDQFPYTDHTESGVLLVRK 367          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_015046129.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Simiduia agarivorans] >AFU97956.1 tRNA (uracil-5-)-methyltransferase [Simiduia agarivorans SA1 = DSM 21679])

HSP 1 Score: 158.3 bits (399), Expect = 7.800e-35
Identity = 152/583 (26.07%), Postives = 204/583 (34.99%), Query Frame = 0
Query:   36 SHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            S E Y+  L  KV  +   F P     + VF SP  H+RLRA+F I +                            +G A   M          G  ++P  I  FP+ + RIN LMPRLL  + A    LR+ L +  FL TL+GD LI+L+Y  PL E          W +AA + LR  LG  ++GRS+ + + ++R YV E                       + +GK                                    YKQ EG F+ PNG +    + W  A                       A +G  G                                          DLLELYCG GN T+ L++ F RV+  EI K  V  A  N  LN IEN  I ++ SE+F  + + K R   R                                                 ++F  + VDPPR GLD  T  L  ++E I+YISC PH++L +LQ                     GL  +H V    V D FP T H+E    L RR
Sbjct:    7 SPEHYDDQLADKVATIERAFAPLDIPAIEVFDSPKSHYRLRAEFKIWQ---------------------------EDGRAHYAMYEK-------GEYKKPYIIDGFPVGAERINQLMPRLLAEINANE-TLRKKLFSAEFLTTLSGDALITLLYHKPLDEQ---------WEQAARV-LRTSLGVDLIGRSRKQKITLERDYVNETL---------------------SVDGKP---------------------------------FHYKQIEGGFTQPNGAVCEKMLAWAVA-----------------------ASKGCSG------------------------------------------DLLELYCGNGNFTLPLAQNFDRVLATEISKTSVEAALHNAELNRIENVAIARMSSEEF-TQAMDKVRPFRR-----------------------------------------LAHIDLDSYHFSTLFVDPPRAGLDPDTLALAQRFERIIYISCNPHTLLDNLQ---------------------GLSNSHKVDRFAVFDQFPYTDHLECGAILSRR 362          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_044498537.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Pseudomonas saudimassiliensis] >CEA02915.1 tRNA (uracil-5-)-methyltransferase [Pseudomonas saudimassiliensis] >CEF26004.1 tRNA (uracil-5-)-methyltransferase [Pseudomonas saudimassiliensis])

HSP 1 Score: 157.5 bits (397), Expect = 1.300e-34
Identity = 152/579 (26.25%), Postives = 218/579 (37.65%), Query Frame = 0
Query:   40 YEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            YE  L+ K Q L  L QP+ +    VF SP  H RLRA+F +                              +G     M          G ++RP+ I   P+AS+RIN+LM  LL+A +A P VL R L  + FL TL+G+ L++L Y  P+ E          W  AA + L + LG  ++GRS+GR   + R +V EA  +                                                            Y+Q EG F+ PNGQ+  H + W      A+  A D ++                                                           DLLELYCG GN T+ LS +F+RV+  E+ K  V  A EN+ LN ++N T++++ S     EE+ +     RE  R          ++G+ +                             ++FG V VDPPR GLD  T +L+  Y+ ILYISC PH++  +L   DE                  L  TH +V   + D FP + H+E+ V L RR
Sbjct:   10 YEQQLEEKRQRLIALLQPFAAPEPEVFASPREHFRLRAEFRLW---------------------------YEQGQPHYAMFEP-------GDNRRPILIEQLPIASKRINELMMPLLEACKADP-VLGRKLFQIEFLTTLSGEALVTLCYHRPIDED---------WDVAATV-LAEQLGILLIGRSRGRKRVLQRDHVLEALTV------------------------------------------------------AGRTWHYQQAEGGFTQPNGQVNQHMLAW------ALDAAGDNSR-----------------------------------------------------------DLLELYCGNGNFTLPLSTRFRRVLATELSKSSVRSALENIALNQVDNVTLVRLAS-----EEVTQALTGVREFRR----------LQGVDLS---------------------------GYDFGTVFVDPPRAGLDPATLELVKGYDRILYISCNPHTLAANL---DE------------------LHGTHRIVRCALFDQFPYSHHMESGVLLERR 361          
BLAST of NO19G01220 vs. NCBI_GenBank
Match: WP_061900804.1 (tRNA (uridine(54)-C5)-methyltransferase TrmA [Vibrio cidicii] >KYN81821.1 tRNA (uracil-5-)-methyltransferase [Vibrio cidicii])

HSP 1 Score: 157.5 bits (397), Expect = 1.300e-34
Identity = 153/590 (25.93%), Postives = 222/590 (37.63%), Query Frame = 0
Query:   34 DYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQXXXXXXXXXXXXXXLEKISEGTAANTMTSSKLCYLMWGYDQR-PVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLR----DGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGGNRAHEGLGGCGESKTGSDKXXXXXXXXXXXXXXXXXXXRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKEVEXXXXXXXXXXXXXXXXXXXFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            D + ++Y+  L  KVQ L ++F PY +  L VF SP  H+R+RA+F +      +EG +                               + Y+M+  + R    +  FP ASR INDLMP L++A++ G   LRR L  V+FL TL+G+ L+SL+Y   L E          W E A    +    +G    ++GR++   + +DR YV E                       +  GK                               P I  Y+Q E +F+ PNG++A   + W          A D                    C +   G                                   DLLELYCG GN ++AL++ F+RV+  E+ K  V  A+ N+  N IEN  II++ +E+F     GK     RE  R   A V                                       +N   + VDPPR G+D  T K++  YE ILYISC P ++L +L+                      L ETH +    + D FP T H+EA V L R+
Sbjct:    5 DVNPQRYQAQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVW-----HEGDE-------------------------------MYYIMFNQETREKYRVDQFPAASRLINDLMPLLIEAMQ-GNESLRRKLFQVDFLSTLSGEILVSLLYHRQLDEA---------WIENAKTLKQRLNDEGFNLNLIGRARKMKIVLDRDYVIEKL---------------------DVNGK-------------------------------PYI--YQQVENSFTQPNGKVAEKMLAW----------AVD--------------------CTQESQG-----------------------------------DLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQYNIAANKIENVQIIRMSAEEFTEAMEGK-----REFRRLKDAGV-----------------------------------DLKSYNCNTIFVDPPRAGMDIDTCKMVQGYERILYISCNPETLLENLE---------------------ILSETHTITRFALFDQFPYTHHMEAGVMLERK 368          
The following BLAST results are available for this feature:
BLAST of NO19G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23648.11.100e-14048.74trna (uracil-5-)-methyltransferase [Nannochloropsi... [more]
XP_005854838.15.200e-4756.61trna (uracil-5-)-methyltransferase, partial [Nanno... [more]
XP_002500539.14.300e-4127.59predicted protein [Micromonas commoda] >ACO61797.1... [more]
WP_078085881.15.800e-3826.31tRNA (uridine(54)-C5)-methyltransferase TrmA [Micr... [more]
WP_010130808.11.200e-3525.21tRNA (uridine(54)-C5)-methyltransferase TrmA [Micr... [more]
WP_027021434.12.700e-3526.41tRNA (uridine(54)-C5)-methyltransferase TrmA [Conc... [more]
WP_077403755.13.500e-3524.87tRNA (uridine(54)-C5)-methyltransferase TrmA [Micr... [more]
WP_015046129.17.800e-3526.07tRNA (uridine(54)-C5)-methyltransferase TrmA [Simi... [more]
WP_044498537.11.300e-3426.25tRNA (uridine(54)-C5)-methyltransferase TrmA [Pseu... [more]
WP_061900804.11.300e-3425.93tRNA (uridine(54)-C5)-methyltransferase TrmA [Vibr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01220.1NO19G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531724gene_7517Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01220.1NO19G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01220 ID=NO19G01220|Name=NO19G01220|organism=Nannochloropsis oceanica|type=gene|length=1887bp
ATGACGACAGCACGAACAGCAGCAGAAGAAGACGCTGACGGCATCCTCCT
CCTACAGCACGACACACTTGGCACGGACCTCAGCTACTTATGTCTGGACG
ACTACTCCCACGAGCAATACGAAGTATCTCTCCAGGGAAAAGTACAGGCT
TTACGAGAGCTATTCCAGCCTTACTGGTCATCAGTATTGACAGTCTTTCG
TTCCCCTCCCGTGCATCATCGTCTTCGGGCGAAGTTTGGGATTGGGCGGG
TCATTACACGAAATGAGGGTTCACAAGAGAAAGGGAACGAGGAGGAGGAG
AAAGAGGAGGAGGAGGGCCTGGAGAAAATAAGTGAGGGTACTGCAGCTAA
TACCATGACCAGCTCAAAGCTTTGCTATCTTATGTGGGGCTACGATCAAC
GGCCCGTCGCCATTTCTTCTTTTCCTCTCGCCTCTCGTCGGATAAATGAC
TTGATGCCTCGCCTTCTACAAGCCCTCGAAGCAGGACCAGTAGTCTTGCG
CCGGGGGCTTCGCGCGGTTAATTTTTTGGATACCTTGGCTGGAGACACTC
TCATCTCCTTGATGTACCAAGTGCCGTTGATCGAAGGAGGGAAGGAGGGA
GGGCAGGGAGGCTTCTGGGCAGAGGCGGCGGGAATATGGTTGCGGGATGG
CTTGGGGTGCCAGGTTGTGGGGAGAAGTAAAGGGAGGGTGGTGGCTGTGG
ATAGAGCCTATGTAACAGAAGCTTTTCATCTCTTTCCCTGCTCATCCTCG
TCCTCCTCGCCTTGCTTCTCTTCTTTCTATCTCGGCAACAACTGCGAGGG
CAAAGGGGATAAAGCACGAAAAGCGGAGGAATTGGTATCTTTTTTTCCTC
CTCCATCATCATCTCCTCATCCTTCTCCTTGTTCACACATACCTGTTCCC
ACCATCCTACGTTACAAGCAGTGGGAAGGTGCGTTTTCAAACCCCAACGG
GCAGATGGCCATGCACACCATTCGTTGGTTATGTGCCCGGGCGGATGCCA
TTCTTCTTGCTGCTGATGAGGCGAAAACGGAGGCCGATGAAGAAGGGGGT
AACAGGGCACACGAGGGTCTTGGTGGCTGCGGCGAGAGCAAGACCGGCAG
CGACAAGGGCCGAACGAACAGCCGCCTCAGCAGCGAGAGCAGCAGCAGCA
GCAGCTACAAGAGCCGTCAGAACTGCAATCACCACTCCACCAAAAGTACT
TGTGACTTACTCGAGCTGTACTGTGGAGGCGGGAATCACACAGTGGCCTT
AAGCCGAAAATTCCAGAGGGTGGTGGGGGTCGAGATTGACAAACGGCTCG
TTGCTGTGGCAAGAGAAAATTTGGTATTAAATGGAATCGAGAATACGACC
ATAATTCAGATTCCGAGCGAGAAATTTCGGGTGGAGGAACTGGGGAAATA
CCGACGGAAGGAGCGCGAAAAGGAAAGGAAGGCGGCGGCGGCAGTTGTAC
CAGGAGAAGTAGAAGGAATGAAGGTGGGGGATTGCGGGAACTCGAAAGAG
GTGGAGGAGGAGGAGGAAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGA
GGAGGATGATGAATTTAACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGG
TGGGTTTAGACCGACATACCCGGAAGTTGATTTCTCAATACGAGCACATT
TTGTACATTTCCTGTGGACCCCATTCGATGCTGCGGGATTTGCAGGGAGA
GGACGAGGAGAAGCAAGAGCGTAGCACTGACAAGACGTATCGGTCCCTGG
CTGGGTTTGGGCTGGTGGAAACGCACGATGTTGTTGATATGTGTGTTTTG
GATCATTTCCCAGGCACCATGCACATCGAGGCGGCTGTGCATTTGCGACG
TCGACGACGACGATACACAAGCCAGACGAGCAAGTGA
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protein sequence of NO19G01220.1

>NO19G01220.1-protein ID=NO19G01220.1-protein|Name=NO19G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MTTARTAAEEDADGILLLQHDTLGTDLSYLCLDDYSHEQYEVSLQGKVQA
LRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQEKGNEEEE
KEEEEGLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRIND
LMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEG
GQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSS
SSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVP
TILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGG
NRAHEGLGGCGESKTGSDKGRTNSRLSSESSSSSSYKSRQNCNHHSTKST
CDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTT
IIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKE
VEEEEEGREMEEEGRREEDDEFNFGVVLVDPPRVGLDRHTRKLISQYEHI
LYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVL
DHFPGTMHIEAAVHLRRRRRRYTSQTSK*
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Synonyms
Publications