NO19G01220.1, NO19G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01220.1
Unique NameNO19G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1887
Alignment locationchr19:391025..392911 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:391025..392911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01220.1 vs.
Match: EWM23648.1 (trna (uracil-5-)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 513.1 bits (1320), Expect = 1.200e-141
Identity = 322/646 (49.85%), Postives = 388/646 (60.06%), Query Frame = 0 
Query:    9 EEDADGILLLQHDTLGTDLSYLCLDDYSHEQYEVSLQGKVQALRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQEKGNEEEEKEEEEGLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFP---CSSSSSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKT------EADEEGGNRAHE--------------GLGGC---------GESKTGSDKGRTNSRLSSESSSSSSYKSRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTTIIQIPSEKFRVEELGKYRRKEREKERK----AAAAVVPGEVEGMKVGDCGNSKEVEEEEEGREMEEEGRREEDDEFNFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRR 619
            E   + IL L  + LG DLSYL  +  S +QYE SLQ KV  LR +F PYWS   T+FRSPPVH+RLRAKFGIGRV+   + S   G      E        S  T A   +  KLCYLMWG D++ V ISSFPLASRRINDLMPRLL AL  GP++LRR LRAVNFLDTLAGDTLI+LMY+    EGGK   +   W  AA   +++ LG QVVGR K   + VDRAYV E F L P    SS  +SP    +  G      G   R         P  +S+  P PC     P+ILRYKQW+GAFSNPNG MA+HT+RWLCARADA+L   D  +       EADE G  R  E              G GGC         GE +   ++     R+     S                   DLLEL+CGGGNHTVALSRKF+RVVGVEID+RLVA A+ENL LNG++N ++IQIPSE+F  E LG YRR++ ++E      A A  + G   G +V   G    +    +G      G    +D+ +F VVLVDPPR GLDRHTRK++S+YE ILYISC P S+LRDL+GE EE++ +S D+ + SLAGFGLV TH VVDMCVLDHFPGT HIE AVHL+RR
Sbjct:    5 EGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLP--QASHPAGPMAGITE--------SARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEE--WVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASP-LPPYAPGTGGADTGRDPRGG-------PRRASAGVPHPC-----PSILRYKQWDGAFSNPNGCMALHTLRWLCARADAVLQRGDAPRGVQATGGEADERGRERQMEDGDREQQGDTEGRGGPGGCEGCVDVASGGEGRVCRERQGLRPRVCRPPPSGDK------------PPAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGP--GKRVASAGGEAGLTARAQGMGQSPPG----EDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRR 607
The following BLAST results are available for this feature:
BLAST of NO19G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23648.11.200e-14149.85trna (uracil-5-)-methyltransferase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01220NO19G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01220.1NO19G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01220.1.cds1NO19G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01220.1 ID=NO19G01220.1|Name=NO19G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp
ATGACGACAGCACGAACAGCAGCAGAAGAAGACGCTGACGGCATCCTCCT
CCTACAGCACGACACACTTGGCACGGACCTCAGCTACTTATGTCTGGACG
ACTACTCCCACGAGCAATACGAAGTATCTCTCCAGGGAAAAGTACAGGCT
TTACGAGAGCTATTCCAGCCTTACTGGTCATCAGTATTGACAGTCTTTCG
TTCCCCTCCCGTGCATCATCGTCTTCGGGCGAAGTTTGGGATTGGGCGGG
TCATTACACGAAATGAGGGTTCACAAGAGAAAGGGAACGAGGAGGAGGAG
AAAGAGGAGGAGGAGGGCCTGGAGAAAATAAGTGAGGGTACTGCAGCTAA
TACCATGACCAGCTCAAAGCTTTGCTATCTTATGTGGGGCTACGATCAAC
GGCCCGTCGCCATTTCTTCTTTTCCTCTCGCCTCTCGTCGGATAAATGAC
TTGATGCCTCGCCTTCTACAAGCCCTCGAAGCAGGACCAGTAGTCTTGCG
CCGGGGGCTTCGCGCGGTTAATTTTTTGGATACCTTGGCTGGAGACACTC
TCATCTCCTTGATGTACCAAGTGCCGTTGATCGAAGGAGGGAAGGAGGGA
GGGCAGGGAGGCTTCTGGGCAGAGGCGGCGGGAATATGGTTGCGGGATGG
CTTGGGGTGCCAGGTTGTGGGGAGAAGTAAAGGGAGGGTGGTGGCTGTGG
ATAGAGCCTATGTAACAGAAGCTTTTCATCTCTTTCCCTGCTCATCCTCG
TCCTCCTCGCCTTGCTTCTCTTCTTTCTATCTCGGCAACAACTGCGAGGG
CAAAGGGGATAAAGCACGAAAAGCGGAGGAATTGGTATCTTTTTTTCCTC
CTCCATCATCATCTCCTCATCCTTCTCCTTGTTCACACATACCTGTTCCC
ACCATCCTACGTTACAAGCAGTGGGAAGGTGCGTTTTCAAACCCCAACGG
GCAGATGGCCATGCACACCATTCGTTGGTTATGTGCCCGGGCGGATGCCA
TTCTTCTTGCTGCTGATGAGGCGAAAACGGAGGCCGATGAAGAAGGGGGT
AACAGGGCACACGAGGGTCTTGGTGGCTGCGGCGAGAGCAAGACCGGCAG
CGACAAGGGCCGAACGAACAGCCGCCTCAGCAGCGAGAGCAGCAGCAGCA
GCAGCTACAAGAGCCGTCAGAACTGCAATCACCACTCCACCAAAAGTACT
TGTGACTTACTCGAGCTGTACTGTGGAGGCGGGAATCACACAGTGGCCTT
AAGCCGAAAATTCCAGAGGGTGGTGGGGGTCGAGATTGACAAACGGCTCG
TTGCTGTGGCAAGAGAAAATTTGGTATTAAATGGAATCGAGAATACGACC
ATAATTCAGATTCCGAGCGAGAAATTTCGGGTGGAGGAACTGGGGAAATA
CCGACGGAAGGAGCGCGAAAAGGAAAGGAAGGCGGCGGCGGCAGTTGTAC
CAGGAGAAGTAGAAGGAATGAAGGTGGGGGATTGCGGGAACTCGAAAGAG
GTGGAGGAGGAGGAGGAAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGA
GGAGGATGATGAATTTAACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGG
TGGGTTTAGACCGACATACCCGGAAGTTGATTTCTCAATACGAGCACATT
TTGTACATTTCCTGTGGACCCCATTCGATGCTGCGGGATTTGCAGGGAGA
GGACGAGGAGAAGCAAGAGCGTAGCACTGACAAGACGTATCGGTCCCTGG
CTGGGTTTGGGCTGGTGGAAACGCACGATGTTGTTGATATGTGTGTTTTG
GATCATTTCCCAGGCACCATGCACATCGAGGCGGCTGTGCATTTGCGACG
TCGACGACGACGATACACAAGCCAGACGAGCAAGTGA
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protein sequence of NO19G01220.1

>NO19G01220.1-protein ID=NO19G01220.1-protein|Name=NO19G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MTTARTAAEEDADGILLLQHDTLGTDLSYLCLDDYSHEQYEVSLQGKVQA
LRELFQPYWSSVLTVFRSPPVHHRLRAKFGIGRVITRNEGSQEKGNEEEE
KEEEEGLEKISEGTAANTMTSSKLCYLMWGYDQRPVAISSFPLASRRIND
LMPRLLQALEAGPVVLRRGLRAVNFLDTLAGDTLISLMYQVPLIEGGKEG
GQGGFWAEAAGIWLRDGLGCQVVGRSKGRVVAVDRAYVTEAFHLFPCSSS
SSSPCFSSFYLGNNCEGKGDKARKAEELVSFFPPPSSSPHPSPCSHIPVP
TILRYKQWEGAFSNPNGQMAMHTIRWLCARADAILLAADEAKTEADEEGG
NRAHEGLGGCGESKTGSDKGRTNSRLSSESSSSSSYKSRQNCNHHSTKST
CDLLELYCGGGNHTVALSRKFQRVVGVEIDKRLVAVARENLVLNGIENTT
IIQIPSEKFRVEELGKYRRKEREKERKAAAAVVPGEVEGMKVGDCGNSKE
VEEEEEGREMEEEGRREEDDEFNFGVVLVDPPRVGLDRHTRKLISQYEHI
LYISCGPHSMLRDLQGEDEEKQERSTDKTYRSLAGFGLVETHDVVDMCVL
DHFPGTMHIEAAVHLRRRRRRYTSQTSK*
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mRNA from alignment at chr19:391025..392911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01220.1 ID=NO19G01220.1|Name=NO19G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at chr19:391025..392911- (Nannochloropsis oceanica)
ATGACGACAGCACGAACAGCAGCAGAAGAAGACGCTGACGGCATCCTCCT
CCTACAGCACGACACACTTGGCACGGACCTCAGCTACTTATGTCTGGACG
ACTACTCCCACGAGCAATACGAAGTATCTCTCCAGGGAAAAGTACAGGCT
TTACGAGAGCTATTCCAGCCTTACTGGTCATCAGTATTGACAGTCTTTCG
TTCCCCTCCCGTGCATCATCGTCTTCGGGCGAAGTTTGGGATTGGGCGGG
TCATTACACGAAATGAGGGTTCACAAGAGAAAGGGAACGAGGAGGAGGAG
AAAGAGGAGGAGGAGGGCCTGGAGAAAATAAGTGAGGGTACTGCAGCTAA
TACCATGACCAGCTCAAAGCTTTGCTATCTTATGTGGGGCTACGATCAAC
GGCCCGTCGCCATTTCTTCTTTTCCTCTCGCCTCTCGTCGGATAAATGAC
TTGATGCCTCGCCTTCTACAAGCCCTCGAAGCAGGACCAGTAGTCTTGCG
CCGGGGGCTTCGCGCGGTTAATTTTTTGGATACCTTGGCTGGAGACACTC
TCATCTCCTTGATGTACCAAGTGCCGTTGATCGAAGGAGGGAAGGAGGGA
GGGCAGGGAGGCTTCTGGGCAGAGGCGGCGGGAATATGGTTGCGGGATGG
CTTGGGGTGCCAGGTTGTGGGGAGAAGTAAAGGGAGGGTGGTGGCTGTGG
ATAGAGCCTATGTAACAGAAGCTTTTCATCTCTTTCCCTGCTCATCCTCG
TCCTCCTCGCCTTGCTTCTCTTCTTTCTATCTCGGCAACAACTGCGAGGG
CAAAGGGGATAAAGCACGAAAAGCGGAGGAATTGGTATCTTTTTTTCCTC
CTCCATCATCATCTCCTCATCCTTCTCCTTGTTCACACATACCTGTTCCC
ACCATCCTACGTTACAAGCAGTGGGAAGGTGCGTTTTCAAACCCCAACGG
GCAGATGGCCATGCACACCATTCGTTGGTTATGTGCCCGGGCGGATGCCA
TTCTTCTTGCTGCTGATGAGGCGAAAACGGAGGCCGATGAAGAAGGGGGT
AACAGGGCACACGAGGGTCTTGGTGGCTGCGGCGAGAGCAAGACCGGCAG
CGACAAGGGCCGAACGAACAGCCGCCTCAGCAGCGAGAGCAGCAGCAGCA
GCAGCTACAAGAGCCGTCAGAACTGCAATCACCACTCCACCAAAAGTACT
TGTGACTTACTCGAGCTGTACTGTGGAGGCGGGAATCACACAGTGGCCTT
AAGCCGAAAATTCCAGAGGGTGGTGGGGGTCGAGATTGACAAACGGCTCG
TTGCTGTGGCAAGAGAAAATTTGGTATTAAATGGAATCGAGAATACGACC
ATAATTCAGATTCCGAGCGAGAAATTTCGGGTGGAGGAACTGGGGAAATA
CCGACGGAAGGAGCGCGAAAAGGAAAGGAAGGCGGCGGCGGCAGTTGTAC
CAGGAGAAGTAGAAGGAATGAAGGTGGGGGATTGCGGGAACTCGAAAGAG
GTGGAGGAGGAGGAGGAAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGA
GGAGGATGATGAATTTAACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGG
TGGGTTTAGACCGACATACCCGGAAGTTGATTTCTCAATACGAGCACATT
TTGTACATTTCCTGTGGACCCCATTCGATGCTGCGGGATTTGCAGGGAGA
GGACGAGGAGAAGCAAGAGCGTAGCACTGACAAGACGTATCGGTCCCTGG
CTGGGTTTGGGCTGGTGGAAACGCACGATGTTGTTGATATGTGTGTTTTG
GATCATTTCCCAGGCACCATGCACATCGAGGCGGCTGTGCATTTGCGACG
TCGACGACGACGATACACAAGCCAGACGAGCAAGTGA
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Coding sequence (CDS) from alignment at chr19:391025..392911-

>NO19G01220.1 ID=NO19G01220.1|Name=NO19G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=1887bp|location=Sequence derived from alignment at chr19:391025..392911- (Nannochloropsis oceanica)
ATGACGACAGCACGAACAGCAGCAGAAGAAGACGCTGACGGCATCCTCCT
CCTACAGCACGACACACTTGGCACGGACCTCAGCTACTTATGTCTGGACG
ACTACTCCCACGAGCAATACGAAGTATCTCTCCAGGGAAAAGTACAGGCT
TTACGAGAGCTATTCCAGCCTTACTGGTCATCAGTATTGACAGTCTTTCG
TTCCCCTCCCGTGCATCATCGTCTTCGGGCGAAGTTTGGGATTGGGCGGG
TCATTACACGAAATGAGGGTTCACAAGAGAAAGGGAACGAGGAGGAGGAG
AAAGAGGAGGAGGAGGGCCTGGAGAAAATAAGTGAGGGTACTGCAGCTAA
TACCATGACCAGCTCAAAGCTTTGCTATCTTATGTGGGGCTACGATCAAC
GGCCCGTCGCCATTTCTTCTTTTCCTCTCGCCTCTCGTCGGATAAATGAC
TTGATGCCTCGCCTTCTACAAGCCCTCGAAGCAGGACCAGTAGTCTTGCG
CCGGGGGCTTCGCGCGGTTAATTTTTTGGATACCTTGGCTGGAGACACTC
TCATCTCCTTGATGTACCAAGTGCCGTTGATCGAAGGAGGGAAGGAGGGA
GGGCAGGGAGGCTTCTGGGCAGAGGCGGCGGGAATATGGTTGCGGGATGG
CTTGGGGTGCCAGGTTGTGGGGAGAAGTAAAGGGAGGGTGGTGGCTGTGG
ATAGAGCCTATGTAACAGAAGCTTTTCATCTCTTTCCCTGCTCATCCTCG
TCCTCCTCGCCTTGCTTCTCTTCTTTCTATCTCGGCAACAACTGCGAGGG
CAAAGGGGATAAAGCACGAAAAGCGGAGGAATTGGTATCTTTTTTTCCTC
CTCCATCATCATCTCCTCATCCTTCTCCTTGTTCACACATACCTGTTCCC
ACCATCCTACGTTACAAGCAGTGGGAAGGTGCGTTTTCAAACCCCAACGG
GCAGATGGCCATGCACACCATTCGTTGGTTATGTGCCCGGGCGGATGCCA
TTCTTCTTGCTGCTGATGAGGCGAAAACGGAGGCCGATGAAGAAGGGGGT
AACAGGGCACACGAGGGTCTTGGTGGCTGCGGCGAGAGCAAGACCGGCAG
CGACAAGGGCCGAACGAACAGCCGCCTCAGCAGCGAGAGCAGCAGCAGCA
GCAGCTACAAGAGCCGTCAGAACTGCAATCACCACTCCACCAAAAGTACT
TGTGACTTACTCGAGCTGTACTGTGGAGGCGGGAATCACACAGTGGCCTT
AAGCCGAAAATTCCAGAGGGTGGTGGGGGTCGAGATTGACAAACGGCTCG
TTGCTGTGGCAAGAGAAAATTTGGTATTAAATGGAATCGAGAATACGACC
ATAATTCAGATTCCGAGCGAGAAATTTCGGGTGGAGGAACTGGGGAAATA
CCGACGGAAGGAGCGCGAAAAGGAAAGGAAGGCGGCGGCGGCAGTTGTAC
CAGGAGAAGTAGAAGGAATGAAGGTGGGGGATTGCGGGAACTCGAAAGAG
GTGGAGGAGGAGGAGGAAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGA
GGAGGATGATGAATTTAACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGG
TGGGTTTAGACCGACATACCCGGAAGTTGATTTCTCAATACGAGCACATT
TTGTACATTTCCTGTGGACCCCATTCGATGCTGCGGGATTTGCAGGGAGA
GGACGAGGAGAAGCAAGAGCGTAGCACTGACAAGACGTATCGGTCCCTGG
CTGGGTTTGGGCTGGTGGAAACGCACGATGTTGTTGATATGTGTGTTTTG
GATCATTTCCCAGGCACCATGCACATCGAGGCGGCTGTGCATTTGCGACG
TCGACGACGACGATACACAAGCCAGACGAGCAAGTGA
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Synonyms
Publications