NO19G01180, NO19G01180 (gene) Nannochloropsis oceanica

Overview
NameNO19G01180
Unique NameNO19G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1392
Alignment locationchr19:384838..386229 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:384838..386229 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G01180 vs. NCBI_GenBank
Match: EWM23623.1 (hypothetical protein Naga_100137g14 [Nannochloropsis gaditana])

HSP 1 Score: 282.0 bits (720), Expect = 3.400e-72
Identity = 184/434 (42.40%), Postives = 261/434 (60.14%), Query Frame = 0 
Query:    1 MMRPPVSTGRRGAAESSXXXXXXXXXXXXXXXXXXXXXXRHDKSSTGPTTTVSTA-ATIEQAQVKLAAFQQQLKAHMDLEKGNGPLLRALSKRQELQEKRAQFLSLLHHLLNTQASLSASKVWLCVEKERELEQLSRRCELQLKQIQQQKRIRELFLKTDPSIAATSGSSRS------SSARRRPDMPSSLRKDDLQISLGQLKRQAHLESIDVLTHTLTEQQKGYASLSSTYVSTLLAEHSEREEDLDWTLNLLPCLLSSSEGLQAWEKENEQRKKQTLSRYLKFKNEFKKLTEKRRMVEEKVVPECARLEEEINMLAERFHAEVEGRRQGGREWVMGQLEGLRRRVRERGRALEELEGRQVAIEEAFEERMSEGRERVGRLKREGEEWGAMREEARVFFSRALKEVRERLRNFEMRRNAELMEMEELRGMFD 428
            M+RPPV+TGRR A+E S                            +G T  V+ A ATI+ AQVKLAAFQ+QLKA+MDL++GNGPL+RAL KR+ LQ KRAQF +LL HLL TQ SLSASKVWLCVEKER+LE LSRRCELQ++Q Q Q+RIREL L+TDP ++  +  ++S                 SL+  +L  +L  L+R A LE+++++  T+ EQ  GY +L+  YV TLL E  E+ E+ +W   ++P L+   EG++ W +ENE  +K+ L+R+L+ + EFK L + RR VE  V P  AR EE++ ++A +F ++V   R+  RE V  ++E LRR+V E              IE  F  R+ EG E++                AR FF RALK VR+RL+ FE +R+A+L+ + ++  +++
Sbjct:   14 MLRPPVTTGRRRASECSTVEGPSYPYPRPPSRVKAAI-------PSGSTRGVNAAPATIQHAQVKLAAFQEQLKAYMDLDRGNGPLVRALDKREALQGKRAQFFALLQHLLKTQESLSASKVWLCVEKERQLELLSRRCELQIQQTQNQRRIRELLLRTDPKLSDNAAHNKSXXXXXXXXXXXXXXXXPSLQDRELPAALAHLRRVAFLETVEIIARTVQEQAAGYRTLAREYVPTLLEEDREQRENFEWASRVVPKLV---EGMRGWVEENEGTRKKALARFLRRRREFKALQDMRRHVEGTVKPAAARAEEDLQLMAGKFDSDVALVRERAREGVEEEIEKLRRKVEEXXXXXXXXXXXXXXIEVGFAARVQEGEEQMXXXXXXXXXXXXXXXXARDFFQRALKTVRDRLKAFETQRHADLLGIADMMELYE 437
The following BLAST results are available for this feature:
BLAST of NO19G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23623.13.400e-7242.40hypothetical protein Naga_100137g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004455NSK004455Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01180.1NO19G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100137g14gene6833Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01180.1NO19G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01180 ID=NO19G01180|Name=NO19G01180|organism=Nannochloropsis oceanica|type=gene|length=1392bp
ATGATGCGCCCCCCAGTTTCGACGGGGCGACGTGGGGCGGCCGAAAGCAG
CACGGCCACCGGCCCCTCCTACCCGTACCCACGTCCGCCTCCCCCTTCTT
CCCGCGCCTCGGCTGGCCGACATGACAAATCATCTACTGGTCCTACCACA
ACCGTGTCCACCGCCGCGACAATTGAGCAAGCCCAAGTGAAACTTGCCGC
CTTTCAGCAGCAGCTTAAGGCGCACATGGACCTGGAGAAAGGCAATGGTC
CCTTGCTTCGTGCCCTGAGCAAACGCCAAGAATTACAAGAGAAACGCGCC
CAATTCCTCTCTCTCCTCCACCACCTCCTCAACACGCAAGCCAGCCTGAG
CGCTTCCAAAGTCTGGTTGTGCGTCGAAAAAGAACGGGAGCTTGAACAGC
TCTCCCGCCGGTGTGAATTGCAATTGAAACAAATCCAGCAACAGAAACGT
ATTCGAGAGCTCTTCCTCAAGACCGACCCCTCCATCGCCGCCACATCCGG
CAGCAGCCGCAGCAGCAGCGCTCGTCGTCGTCCCGACATGCCATCATCCT
TAAGAAAAGATGACCTTCAAATCTCGCTCGGGCAGCTCAAGCGTCAAGCC
CACCTCGAATCAATCGACGTCCTAACCCACACTCTCACCGAGCAGCAAAA
AGGTTACGCCTCCCTCTCTTCCACCTACGTTTCCACCCTCCTCGCTGAGC
ACTCGGAGCGAGAAGAAGACTTAGACTGGACCTTAAATCTTCTCCCTTGC
CTTCTCTCCTCTTCTGAGGGCCTACAGGCATGGGAGAAAGAAAACGAACA
GAGAAAAAAACAGACTCTGAGTCGTTACTTAAAATTTAAAAATGAATTCA
AAAAATTGACCGAAAAGAGGAGGATGGTCGAGGAGAAAGTCGTGCCAGAA
TGCGCGCGGCTAGAGGAAGAAATAAATATGCTCGCGGAAAGGTTTCATGC
TGAGGTGGAGGGAAGACGGCAGGGAGGGAGGGAGTGGGTGATGGGGCAGT
TAGAGGGTTTGAGAAGGAGGGTAAGGGAGCGAGGAAGGGCATTGGAGGAG
CTGGAGGGGCGGCAGGTGGCGATCGAGGAAGCGTTTGAAGAGAGGATGAG
TGAGGGGAGAGAGAGGGTGGGGAGGTTGAAAAGAGAGGGGGAGGAATGGG
GAGCGATGAGGGAGGAGGCGAGGGTGTTCTTTTCAAGGGCTCTGAAGGAA
GTGAGAGAGAGGCTTCGAAATTTTGAAATGCGAAGAAATGCGGAGTTGAT
GGAAATGGAAGAATTGAGGGGCATGTTTGATGATTTGTTGAACGAGGAGG
GGGAGGAGGAGGGAATGGGGGAGGAGAGCGACGAGGAGGGGTATGAGAGC
GGTGGGGAGGAGGAAGACGAGGAGGAAGACGAGGAGAGATAA
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protein sequence of NO19G01180.1

>NO19G01180.1-protein ID=NO19G01180.1-protein|Name=NO19G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MMRPPVSTGRRGAAESSTATGPSYPYPRPPPPSSRASAGRHDKSSTGPTT
TVSTAATIEQAQVKLAAFQQQLKAHMDLEKGNGPLLRALSKRQELQEKRA
QFLSLLHHLLNTQASLSASKVWLCVEKERELEQLSRRCELQLKQIQQQKR
IRELFLKTDPSIAATSGSSRSSSARRRPDMPSSLRKDDLQISLGQLKRQA
HLESIDVLTHTLTEQQKGYASLSSTYVSTLLAEHSEREEDLDWTLNLLPC
LLSSSEGLQAWEKENEQRKKQTLSRYLKFKNEFKKLTEKRRMVEEKVVPE
CARLEEEINMLAERFHAEVEGRRQGGREWVMGQLEGLRRRVRERGRALEE
LEGRQVAIEEAFEERMSEGRERVGRLKREGEEWGAMREEARVFFSRALKE
VRERLRNFEMRRNAELMEMEELRGMFDDLLNEEGEEEGMGEESDEEGYES
GGEEEDEEEDEER*
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Synonyms
Publications