NO19G01180.1, NO19G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01180.1
Unique NameNO19G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1392
Alignment locationchr19:384838..386229 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:384838..386229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01180.1 vs.
Match: EWM23623.1 (hypothetical protein Naga_100137g14 [Nannochloropsis gaditana])

HSP 1 Score: 356.7 bits (914), Expect = 1.100e-94
Identity = 235/472 (49.79%), Postives = 318/472 (67.37%), Query Frame = 0 
Query:    1 MMRPPVSTGRRGAAESSTATGPSYPYPRPPPPSSRASAGRHDKSSTGPTTTVSTAATIEQAQVKLAAFQQQLKAHMDLEKGNGPLLRALSKRQELQEKRAQFLSLLHHLLNTQASLSASKVWLCVEKERELEQLSRRCELQLKQIQQQKRIRELFLKTDPSIA-------ATSGSSRSSSARRRPDMPSSLRKDDLQISLGQLKRQAHLESIDVLTHTLTEQQKGYASLSSTYVSTLLAEHSEREEDLDWTLNLLPCLLSSSEGLQAWEKENEQRKKQTLSRYLKFKNEFKKLTEKRRMVEEKVVPECARLEEEINMLAERFHAEVEGRRQGGREWVMGQLEGLRRRVRERGRALEELEGRQVAIEEAFEERMSEGRERVGRLKREGEEWGAMREEARVFFSRALKEVRERLRNFEMRRNAELMEMEELRGMFDDLLNEEGEEEGM---GEESDEEG-YESGGEEEDEEEDE 462
            M+RPPV+TGRR A+E ST  GPSYPYPRPP   SR  A     S+ G     +  ATI+ AQVKLAAFQ+QLKA+MDL++GNGPL+RAL KR+ LQ KRAQF +LL HLL TQ SLSASKVWLCVEKER+LE LSRRCELQ++Q Q Q+RIREL L+TDP ++       ++S SS+SS +      PS L+  +L  +L  L+R A LE+++++  T+ EQ  GY +L+  YV TLL E  E+ E+ +W   ++P L+   EG++ W +ENE  +K+ L+R+L+ + EFK L + RR VE  V P  AR EE++ ++A +F ++V   R+  RE V  ++E LRR+V ER  A EELE  Q AIE  F  R+ EG E++ RLK E EEW  MR EAR FF RALK VR+RL+ FE +R+A+L+ + ++  +++ +  EEG  +G    GEES   G YES  +EE+ E +E
Sbjct:   14 MLRPPVTTGRRRASECSTVEGPSYPYPRPP---SRVKAAIPSGSTRGVN---AAPATIQHAQVKLAAFQEQLKAYMDLDRGNGPLVRALDKREALQGKRAQFFALLQHLLKTQESLSASKVWLCVEKERQLELLSRRCELQIQQTQNQRRIRELLLRTDPKLSDNAAHNKSSSKSSKSSKSGLSSQSPS-LQDRELPAALAHLRRVAFLETVEIIARTVQEQAAGYRTLAREYVPTLLEEDREQRENFEWASRVVPKLV---EGMRGWVEENEGTRKKALARFLRRRREFKALQDMRRHVEGTVKPAAARAEEDLQLMAGKFDSDVALVRERAREGVEEEIEKLRRKVEERQGAWEELEKAQAAIEVGFAARVQEGEEQMARLKTEEEEWAVMRTEARDFFQRALKTVRDRLKAFETQRHADLLGIADMMELYEFMKEEEGGGKGRRAEGEESSGGGRYESDTDEEEGEGEE 475
The following BLAST results are available for this feature:
BLAST of NO19G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23623.11.100e-9449.79hypothetical protein Naga_100137g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01180NO19G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01180.1NO19G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01180.1.cds1NO19G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01180.1 ID=NO19G01180.1|Name=NO19G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp
ATGATGCGCCCCCCAGTTTCGACGGGGCGACGTGGGGCGGCCGAAAGCAG
CACGGCCACCGGCCCCTCCTACCCGTACCCACGTCCGCCTCCCCCTTCTT
CCCGCGCCTCGGCTGGCCGACATGACAAATCATCTACTGGTCCTACCACA
ACCGTGTCCACCGCCGCGACAATTGAGCAAGCCCAAGTGAAACTTGCCGC
CTTTCAGCAGCAGCTTAAGGCGCACATGGACCTGGAGAAAGGCAATGGTC
CCTTGCTTCGTGCCCTGAGCAAACGCCAAGAATTACAAGAGAAACGCGCC
CAATTCCTCTCTCTCCTCCACCACCTCCTCAACACGCAAGCCAGCCTGAG
CGCTTCCAAAGTCTGGTTGTGCGTCGAAAAAGAACGGGAGCTTGAACAGC
TCTCCCGCCGGTGTGAATTGCAATTGAAACAAATCCAGCAACAGAAACGT
ATTCGAGAGCTCTTCCTCAAGACCGACCCCTCCATCGCCGCCACATCCGG
CAGCAGCCGCAGCAGCAGCGCTCGTCGTCGTCCCGACATGCCATCATCCT
TAAGAAAAGATGACCTTCAAATCTCGCTCGGGCAGCTCAAGCGTCAAGCC
CACCTCGAATCAATCGACGTCCTAACCCACACTCTCACCGAGCAGCAAAA
AGGTTACGCCTCCCTCTCTTCCACCTACGTTTCCACCCTCCTCGCTGAGC
ACTCGGAGCGAGAAGAAGACTTAGACTGGACCTTAAATCTTCTCCCTTGC
CTTCTCTCCTCTTCTGAGGGCCTACAGGCATGGGAGAAAGAAAACGAACA
GAGAAAAAAACAGACTCTGAGTCGTTACTTAAAATTTAAAAATGAATTCA
AAAAATTGACCGAAAAGAGGAGGATGGTCGAGGAGAAAGTCGTGCCAGAA
TGCGCGCGGCTAGAGGAAGAAATAAATATGCTCGCGGAAAGGTTTCATGC
TGAGGTGGAGGGAAGACGGCAGGGAGGGAGGGAGTGGGTGATGGGGCAGT
TAGAGGGTTTGAGAAGGAGGGTAAGGGAGCGAGGAAGGGCATTGGAGGAG
CTGGAGGGGCGGCAGGTGGCGATCGAGGAAGCGTTTGAAGAGAGGATGAG
TGAGGGGAGAGAGAGGGTGGGGAGGTTGAAAAGAGAGGGGGAGGAATGGG
GAGCGATGAGGGAGGAGGCGAGGGTGTTCTTTTCAAGGGCTCTGAAGGAA
GTGAGAGAGAGGCTTCGAAATTTTGAAATGCGAAGAAATGCGGAGTTGAT
GGAAATGGAAGAATTGAGGGGCATGTTTGATGATTTGTTGAACGAGGAGG
GGGAGGAGGAGGGAATGGGGGAGGAGAGCGACGAGGAGGGGTATGAGAGC
GGTGGGGAGGAGGAAGACGAGGAGGAAGACGAGGAGAGATAA
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protein sequence of NO19G01180.1

>NO19G01180.1-protein ID=NO19G01180.1-protein|Name=NO19G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MMRPPVSTGRRGAAESSTATGPSYPYPRPPPPSSRASAGRHDKSSTGPTT
TVSTAATIEQAQVKLAAFQQQLKAHMDLEKGNGPLLRALSKRQELQEKRA
QFLSLLHHLLNTQASLSASKVWLCVEKERELEQLSRRCELQLKQIQQQKR
IRELFLKTDPSIAATSGSSRSSSARRRPDMPSSLRKDDLQISLGQLKRQA
HLESIDVLTHTLTEQQKGYASLSSTYVSTLLAEHSEREEDLDWTLNLLPC
LLSSSEGLQAWEKENEQRKKQTLSRYLKFKNEFKKLTEKRRMVEEKVVPE
CARLEEEINMLAERFHAEVEGRRQGGREWVMGQLEGLRRRVRERGRALEE
LEGRQVAIEEAFEERMSEGRERVGRLKREGEEWGAMREEARVFFSRALKE
VRERLRNFEMRRNAELMEMEELRGMFDDLLNEEGEEEGMGEESDEEGYES
GGEEEDEEEDEER*
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mRNA from alignment at chr19:384838..386229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01180.1 ID=NO19G01180.1|Name=NO19G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at chr19:384838..386229- (Nannochloropsis oceanica)
ATGATGCGCCCCCCAGTTTCGACGGGGCGACGTGGGGCGGCCGAAAGCAG
CACGGCCACCGGCCCCTCCTACCCGTACCCACGTCCGCCTCCCCCTTCTT
CCCGCGCCTCGGCTGGCCGACATGACAAATCATCTACTGGTCCTACCACA
ACCGTGTCCACCGCCGCGACAATTGAGCAAGCCCAAGTGAAACTTGCCGC
CTTTCAGCAGCAGCTTAAGGCGCACATGGACCTGGAGAAAGGCAATGGTC
CCTTGCTTCGTGCCCTGAGCAAACGCCAAGAATTACAAGAGAAACGCGCC
CAATTCCTCTCTCTCCTCCACCACCTCCTCAACACGCAAGCCAGCCTGAG
CGCTTCCAAAGTCTGGTTGTGCGTCGAAAAAGAACGGGAGCTTGAACAGC
TCTCCCGCCGGTGTGAATTGCAATTGAAACAAATCCAGCAACAGAAACGT
ATTCGAGAGCTCTTCCTCAAGACCGACCCCTCCATCGCCGCCACATCCGG
CAGCAGCCGCAGCAGCAGCGCTCGTCGTCGTCCCGACATGCCATCATCCT
TAAGAAAAGATGACCTTCAAATCTCGCTCGGGCAGCTCAAGCGTCAAGCC
CACCTCGAATCAATCGACGTCCTAACCCACACTCTCACCGAGCAGCAAAA
AGGTTACGCCTCCCTCTCTTCCACCTACGTTTCCACCCTCCTCGCTGAGC
ACTCGGAGCGAGAAGAAGACTTAGACTGGACCTTAAATCTTCTCCCTTGC
CTTCTCTCCTCTTCTGAGGGCCTACAGGCATGGGAGAAAGAAAACGAACA
GAGAAAAAAACAGACTCTGAGTCGTTACTTAAAATTTAAAAATGAATTCA
AAAAATTGACCGAAAAGAGGAGGATGGTCGAGGAGAAAGTCGTGCCAGAA
TGCGCGCGGCTAGAGGAAGAAATAAATATGCTCGCGGAAAGGTTTCATGC
TGAGGTGGAGGGAAGACGGCAGGGAGGGAGGGAGTGGGTGATGGGGCAGT
TAGAGGGTTTGAGAAGGAGGGTAAGGGAGCGAGGAAGGGCATTGGAGGAG
CTGGAGGGGCGGCAGGTGGCGATCGAGGAAGCGTTTGAAGAGAGGATGAG
TGAGGGGAGAGAGAGGGTGGGGAGGTTGAAAAGAGAGGGGGAGGAATGGG
GAGCGATGAGGGAGGAGGCGAGGGTGTTCTTTTCAAGGGCTCTGAAGGAA
GTGAGAGAGAGGCTTCGAAATTTTGAAATGCGAAGAAATGCGGAGTTGAT
GGAAATGGAAGAATTGAGGGGCATGTTTGATGATTTGTTGAACGAGGAGG
GGGAGGAGGAGGGAATGGGGGAGGAGAGCGACGAGGAGGGGTATGAGAGC
GGTGGGGAGGAGGAAGACGAGGAGGAAGACGAGGAGAGATAA
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Coding sequence (CDS) from alignment at chr19:384838..386229-

>NO19G01180.1 ID=NO19G01180.1|Name=NO19G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr19:384838..386229- (Nannochloropsis oceanica)
ATGATGCGCCCCCCAGTTTCGACGGGGCGACGTGGGGCGGCCGAAAGCAG
CACGGCCACCGGCCCCTCCTACCCGTACCCACGTCCGCCTCCCCCTTCTT
CCCGCGCCTCGGCTGGCCGACATGACAAATCATCTACTGGTCCTACCACA
ACCGTGTCCACCGCCGCGACAATTGAGCAAGCCCAAGTGAAACTTGCCGC
CTTTCAGCAGCAGCTTAAGGCGCACATGGACCTGGAGAAAGGCAATGGTC
CCTTGCTTCGTGCCCTGAGCAAACGCCAAGAATTACAAGAGAAACGCGCC
CAATTCCTCTCTCTCCTCCACCACCTCCTCAACACGCAAGCCAGCCTGAG
CGCTTCCAAAGTCTGGTTGTGCGTCGAAAAAGAACGGGAGCTTGAACAGC
TCTCCCGCCGGTGTGAATTGCAATTGAAACAAATCCAGCAACAGAAACGT
ATTCGAGAGCTCTTCCTCAAGACCGACCCCTCCATCGCCGCCACATCCGG
CAGCAGCCGCAGCAGCAGCGCTCGTCGTCGTCCCGACATGCCATCATCCT
TAAGAAAAGATGACCTTCAAATCTCGCTCGGGCAGCTCAAGCGTCAAGCC
CACCTCGAATCAATCGACGTCCTAACCCACACTCTCACCGAGCAGCAAAA
AGGTTACGCCTCCCTCTCTTCCACCTACGTTTCCACCCTCCTCGCTGAGC
ACTCGGAGCGAGAAGAAGACTTAGACTGGACCTTAAATCTTCTCCCTTGC
CTTCTCTCCTCTTCTGAGGGCCTACAGGCATGGGAGAAAGAAAACGAACA
GAGAAAAAAACAGACTCTGAGTCGTTACTTAAAATTTAAAAATGAATTCA
AAAAATTGACCGAAAAGAGGAGGATGGTCGAGGAGAAAGTCGTGCCAGAA
TGCGCGCGGCTAGAGGAAGAAATAAATATGCTCGCGGAAAGGTTTCATGC
TGAGGTGGAGGGAAGACGGCAGGGAGGGAGGGAGTGGGTGATGGGGCAGT
TAGAGGGTTTGAGAAGGAGGGTAAGGGAGCGAGGAAGGGCATTGGAGGAG
CTGGAGGGGCGGCAGGTGGCGATCGAGGAAGCGTTTGAAGAGAGGATGAG
TGAGGGGAGAGAGAGGGTGGGGAGGTTGAAAAGAGAGGGGGAGGAATGGG
GAGCGATGAGGGAGGAGGCGAGGGTGTTCTTTTCAAGGGCTCTGAAGGAA
GTGAGAGAGAGGCTTCGAAATTTTGAAATGCGAAGAAATGCGGAGTTGAT
GGAAATGGAAGAATTGAGGGGCATGTTTGATGATTTGTTGAACGAGGAGG
GGGAGGAGGAGGGAATGGGGGAGGAGAGCGACGAGGAGGGGTATGAGAGC
GGTGGGGAGGAGGAAGACGAGGAGGAAGACGAGGAGAGATAA
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Synonyms
Publications