NO19G01170, NO19G01170 (gene) Nannochloropsis oceanica

Overview
NameNO19G01170
Unique NameNO19G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr19:382368..383942 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:382368..383942 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G01170 vs. NCBI_GenBank
Match: EWM23627.1 (hypothetical protein Naga_100137g13 [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 9.000e-61
Identity = 250/573 (43.63%), Postives = 302/573 (52.71%), Query Frame = 0 
Query:   14 LLLLFPLLLYTPPPLAHAIEIKWTPADGEGTGPMPASKKYRDQLERLGQLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVGLLGSLVLGIRRHPLTPAMLLASSFAYFNIRRAAKKTGCIVSKSPHLTIWEPPISYLSKLLNDELPFLSPSSSLPSSSLNCSPASFERLHRYRSKKVTGREGEKEGEG------DLEEGLLVRESLAVGKGEVVYRKAVGLVRTLRLLDA----------------------XXXXXXXXXXXXXXXXTGEEGVFVTKRSMVPGDGRRGGGGALGQWMLMPVRIARREGR--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAVYEEVFLRSLPGCPWRGELRLSASWQ--QAGGKGGKREGEVIVEVAWFTPCSSSPSLPPSFQQQVAARLLQEAQALMEREMAMHKVRERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRWQPSADLAARRNPRKGG 525
            + LLF L+L+  P    AIEI WTPADGEGTGPMP SK+YRDQ+E+L QLEA                                                     +LGSL  G+ RHPL+ A L A+ +A + +RRAA++TGC+VSKSPH ++WEPP+ Y++ LLN+++P L    S+ S     SPA F R+HR       G+EG  +G G          G +V ES+ VG GEV +RKA  LVRTLRL DA                      XXXXX             +EGVFV + + +PG  +      L +W LMPVRI R+EGR                                XXXXXXXXXXXXXXXXXXXXXXXXXX                   +E  Y E  LR LPGC W G+L L+ASW+  + GG  G     V V+V W    S   SLP SFQ++VAA L+ EA+ L+ REM +H+ RERQ              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GRWQPSADLAARRNPR+GG
Sbjct:    6 VFLLFVLVLFHLPTAHRAIEINWTPADGEGTGPMPVSKRYRDQMEKLQQLEAEQVSRDRARAGASAHPPPASSSMPSAQKSAVQQR------------------SVLGSLFFGVCRHPLSTATLAATVWAGYRLRRAARETGCLVSKSPHFSVWEPPLGYVAHLLNEDIPALMLEDSMASVGAGGSPAGFARVHR------AGKEGRGQGGGRXXXXXXXXAGTVVFESVQVGSGEVSFRKATDLVRTLRLFDAAXXXXXXXXXXXXXXXXXXXXXXXXXXPSCLGRFYSSERAKEGVFVARATAIPGASK-----GLRRWALMPVRIFRQEGREKLARGQRRTKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEGRDASPPSGEGKRGGRMMEVAYAETVLRPLPGCVWTGDLCLTASWRDPRHGGDDG-----VHVQVTWHRLPSPGTSLPSSFQREVAAALVHEARKLVAREMVIHRARERQ----QGQLAQDAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGPGRWQPSADLAARRNPRRGG 540
The following BLAST results are available for this feature:
BLAST of NO19G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23627.19.000e-6143.63hypothetical protein Naga_100137g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004454NSK004454Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01170.1NO19G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100137g13gene6834Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01170.1NO19G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01170 ID=NO19G01170|Name=NO19G01170|organism=Nannochloropsis oceanica|type=gene|length=1575bp
ATGCCTCGAGTTCACTTCCCCTTACTCTCCCTCTCTGCCCTCCTTCTCCT
CTTCCCCCTCCTCCTCTATACCCCTCCTCCACTCGCCCACGCCATCGAAA
TAAAATGGACGCCGGCCGACGGCGAGGGGACAGGGCCCATGCCTGCCTCC
AAGAAATACAGAGACCAACTGGAAAGGCTGGGGCAACTAGAGGCAGAGCA
AGCGCAGAGGGATCGAGAGCGGGAAGCGGCTGCCGCTACTGCTCCTCGTC
GTAGTAGCGGTAGTGGTGGTCATCCTCGCCCTTCTTCTTCTTCGCCTCCT
CCTCAAGTTCTACGGCAACAGCAGCAACCTCAGCAACAGCGGCAGCCAGT
AGGTCTATTAGGTAGTCTCGTCCTAGGAATCCGTCGACACCCTCTCACTC
CCGCCATGCTCCTCGCCTCCTCCTTCGCCTATTTTAATATCCGTCGCGCC
GCCAAAAAAACAGGGTGTATTGTGTCTAAATCCCCCCATCTTACCATATG
GGAGCCTCCTATCAGTTATCTATCTAAACTCCTCAACGACGAATTGCCCT
TCCTCTCCCCTTCGTCCTCCCTCCCTTCTTCCTCTTTAAATTGTAGCCCC
GCGTCATTTGAACGCCTGCATCGTTATCGTTCCAAGAAGGTGACAGGAAG
GGAGGGAGAGAAGGAGGGGGAAGGAGACTTGGAAGAAGGGCTACTGGTAC
GAGAGAGTTTGGCGGTGGGGAAAGGGGAGGTGGTTTATCGGAAAGCTGTT
GGCTTGGTGCGCACCCTCCGTTTGCTGGACGCTGCCTCGTCCTCGTCCTC
GTCCTCGCTGGGTAGTTTTTATTCGTCGGAGACAGGGGAGGAGGGAGTGT
TCGTGACAAAGAGGAGCATGGTGCCAGGGGATGGAAGGAGGGGAGGGGGA
GGAGCGCTAGGACAGTGGATGTTGATGCCTGTCCGGATTGCAAGGAGGGA
AGGGAGGGCGGTGGTGGGGAAGGAGAAGAAGAGCAAGAAGAAGAAGACGA
CGAAGAAAAGGAAGATGGCAGAGGAGGGGGGTAGCAGCGGTAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAAGAAGAAGAATGTTGAAGC
TGTCTATGAAGAAGTCTTCCTTCGCTCCCTCCCTGGATGCCCTTGGAGGG
GCGAGCTGCGTCTCTCTGCCTCCTGGCAGCAAGCGGGAGGGAAGGGAGGG
AAAAGAGAGGGCGAAGTGATTGTCGAAGTCGCCTGGTTCACTCCCTGCAG
CAGTTCTCCCTCCCTCCCTCCCTCCTTCCAACAGCAGGTGGCCGCCCGCT
TGTTGCAGGAGGCTCAAGCGCTGATGGAGAGAGAGATGGCAATGCACAAA
GTGCGCGAACGGCAACAAGAACAATTTGCCTCGGACGCGAAAGCAGCCGC
TCTGGAACGGCGAAAGAAGGAGAGACAACTCCTTCTCCACCCTCCCCCAG
ACAAGAAGAAGTGGGCGAAATTACAGCGGCATTCTGGAGGAGGAGGAGGA
GGGGGAGAAAAGGCAGGGCGGTGGCAGCCGAGCGCGGACTTGGCAGCGAG
GCGGAACCCGAGGAAGGGTGGATGA
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protein sequence of NO19G01170.1

>NO19G01170.1-protein ID=NO19G01170.1-protein|Name=NO19G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MPRVHFPLLSLSALLLLFPLLLYTPPPLAHAIEIKWTPADGEGTGPMPAS
KKYRDQLERLGQLEAEQAQRDREREAAAATAPRRSSGSGGHPRPSSSSPP
PQVLRQQQQPQQQRQPVGLLGSLVLGIRRHPLTPAMLLASSFAYFNIRRA
AKKTGCIVSKSPHLTIWEPPISYLSKLLNDELPFLSPSSSLPSSSLNCSP
ASFERLHRYRSKKVTGREGEKEGEGDLEEGLLVRESLAVGKGEVVYRKAV
GLVRTLRLLDAASSSSSSSLGSFYSSETGEEGVFVTKRSMVPGDGRRGGG
GALGQWMLMPVRIARREGRAVVGKEKKSKKKKTTKKRKMAEEGGSSGSSS
SSSNNNNNNNKKKNVEAVYEEVFLRSLPGCPWRGELRLSASWQQAGGKGG
KREGEVIVEVAWFTPCSSSPSLPPSFQQQVAARLLQEAQALMEREMAMHK
VRERQQEQFASDAKAAALERRKKERQLLLHPPPDKKKWAKLQRHSGGGGG
GGEKAGRWQPSADLAARRNPRKGG*
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Synonyms
Publications