NO19G01170.1, NO19G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01170.1
Unique NameNO19G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr19:382368..383942 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:382368..383942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01170.1 vs.
Match: EWM23627.1 (hypothetical protein Naga_100137g13 [Nannochloropsis gaditana])

HSP 1 Score: 385.6 bits (989), Expect = 2.500e-103
Identity = 263/567 (46.38%), Postives = 333/567 (58.73%), Query Frame = 0 
Query:   14 LLLLFPLLLYTPPPLAHAIEIKWTPADGEGTGPMPASKKYRDQLERLGQLEAEQAQRDREREAAAATAPRRSSGSGGHPRPSSSSPPPQVLRQQQQPQQQRQPVGLLGSLVLGIRRHPLTPAMLLASSFAYFNIRRAAKKTGCIVSKSPHLTIWEPPISYLSKLLNDELPFLSPSSSLPSSSLNCSPASFERLHRYRSKKVTGREGEKEGEGDLEEGLLVRESLAVGKGEVVYRKAVGLVRTLRLLDAASSSSSSS----------------------LGSFYSSETGEEGVFVTKRSMVPGDGRRGGGGALGQWMLMPVRIARREGRA-------------------VVGKE----KKSKKKKTTKKRKMAEEG-------GSSGSSSSSSNNNNNNNKK--KNVEAVYEEVFLRSLPGCPWRGELRLSASWQQA--GGKGGKREGEVIVEVAWFTPCSSSPSLPPSFQQQVAARLLQEAQALMEREMAMHKVRERQQEQFASDAKAAALERRKKERQLLLHPPPDKKKWAKLQRHSGGGGGGGEKAGRWQPSADLAARRNPRKGG 525
            + LLF L+L+  P    AIEI WTPADGEGTGPMP SK+YRDQ+E+L QLEAEQ  RDR R  A+A           HP P+SSS P      Q+   QQR    +LGSL  G+ RHPL+ A L A+ +A + +RRAA++TGC+VSKSPH ++WEPP+ Y++ LLN+++P L    S+ S     SPA F R+HR   +      G +EG+G+   G +V ES+ VG GEV +RKA  LVRTLRL DAA+SSSSSS                      LG FYSSE  +EGVFV + + +PG  +      L +W LMPVRI R+EGR                    + GKE    K+ KKKK  K+RK   +G       G  G     ++  +   K+  + +E  Y E  LR LPGC W G+L L+ASW+    GG  G     V V+V W    S   SLP SFQ++VAA L+ EA+ L+ REM +H+ RERQQ Q A DA  A  E++KKERQLLL+PPPDKKKW K+QR  G   G     GRWQPSADLAARRNPR+GG
Sbjct:    6 VFLLFVLVLFHLPTAHRAIEINWTPADGEGTGPMPVSKRYRDQMEKLQQLEAEQVSRDRARAGASA-----------HPPPASSSMPSA----QKSAVQQRS---VLGSLFFGVCRHPLSTATLAATVWAGYRLRRAARETGCLVSKSPHFSVWEPPLGYVAHLLNEDIPALMLEDSMASVGAGGSPAGFARVHRAGKEGRGQGGGREEGKGEGGAGTVVFESVQVGSGEVSFRKATDLVRTLRLFDAAASSSSSSSSSSSSSFSSSSSFSFSSAPSCLGRFYSSERAKEGVFVARATAIPGASK-----GLRRWALMPVRIFRQEGREKLARGQRRTKKEKMGGKKRIKGKETTFRKRPKKKKGGKRRKGGRKGRRKVETSGKVGQEGRDASPPSGEGKRGGRMMEVAYAETVLRPLPGCVWTGDLCLTASWRDPRHGGDDG-----VHVQVTWHRLPSPGTSLPSSFQREVAAALVHEARKLVAREMVIHRARERQQGQLAQDAARALQEKKKKERQLLLNPPPDKKKWKKMQRQGGKEAG----PGRWQPSADLAARRNPRRGG 540
The following BLAST results are available for this feature:
BLAST of NO19G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23627.12.500e-10346.38hypothetical protein Naga_100137g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01170NO19G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01170.1NO19G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01170.1.cds1NO19G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01170.1 ID=NO19G01170.1|Name=NO19G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ATGCCTCGAGTTCACTTCCCCTTACTCTCCCTCTCTGCCCTCCTTCTCCT
CTTCCCCCTCCTCCTCTATACCCCTCCTCCACTCGCCCACGCCATCGAAA
TAAAATGGACGCCGGCCGACGGCGAGGGGACAGGGCCCATGCCTGCCTCC
AAGAAATACAGAGACCAACTGGAAAGGCTGGGGCAACTAGAGGCAGAGCA
AGCGCAGAGGGATCGAGAGCGGGAAGCGGCTGCCGCTACTGCTCCTCGTC
GTAGTAGCGGTAGTGGTGGTCATCCTCGCCCTTCTTCTTCTTCGCCTCCT
CCTCAAGTTCTACGGCAACAGCAGCAACCTCAGCAACAGCGGCAGCCAGT
AGGTCTATTAGGTAGTCTCGTCCTAGGAATCCGTCGACACCCTCTCACTC
CCGCCATGCTCCTCGCCTCCTCCTTCGCCTATTTTAATATCCGTCGCGCC
GCCAAAAAAACAGGGTGTATTGTGTCTAAATCCCCCCATCTTACCATATG
GGAGCCTCCTATCAGTTATCTATCTAAACTCCTCAACGACGAATTGCCCT
TCCTCTCCCCTTCGTCCTCCCTCCCTTCTTCCTCTTTAAATTGTAGCCCC
GCGTCATTTGAACGCCTGCATCGTTATCGTTCCAAGAAGGTGACAGGAAG
GGAGGGAGAGAAGGAGGGGGAAGGAGACTTGGAAGAAGGGCTACTGGTAC
GAGAGAGTTTGGCGGTGGGGAAAGGGGAGGTGGTTTATCGGAAAGCTGTT
GGCTTGGTGCGCACCCTCCGTTTGCTGGACGCTGCCTCGTCCTCGTCCTC
GTCCTCGCTGGGTAGTTTTTATTCGTCGGAGACAGGGGAGGAGGGAGTGT
TCGTGACAAAGAGGAGCATGGTGCCAGGGGATGGAAGGAGGGGAGGGGGA
GGAGCGCTAGGACAGTGGATGTTGATGCCTGTCCGGATTGCAAGGAGGGA
AGGGAGGGCGGTGGTGGGGAAGGAGAAGAAGAGCAAGAAGAAGAAGACGA
CGAAGAAAAGGAAGATGGCAGAGGAGGGGGGTAGCAGCGGTAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAAGAAGAAGAATGTTGAAGC
TGTCTATGAAGAAGTCTTCCTTCGCTCCCTCCCTGGATGCCCTTGGAGGG
GCGAGCTGCGTCTCTCTGCCTCCTGGCAGCAAGCGGGAGGGAAGGGAGGG
AAAAGAGAGGGCGAAGTGATTGTCGAAGTCGCCTGGTTCACTCCCTGCAG
CAGTTCTCCCTCCCTCCCTCCCTCCTTCCAACAGCAGGTGGCCGCCCGCT
TGTTGCAGGAGGCTCAAGCGCTGATGGAGAGAGAGATGGCAATGCACAAA
GTGCGCGAACGGCAACAAGAACAATTTGCCTCGGACGCGAAAGCAGCCGC
TCTGGAACGGCGAAAGAAGGAGAGACAACTCCTTCTCCACCCTCCCCCAG
ACAAGAAGAAGTGGGCGAAATTACAGCGGCATTCTGGAGGAGGAGGAGGA
GGGGGAGAAAAGGCAGGGCGGTGGCAGCCGAGCGCGGACTTGGCAGCGAG
GCGGAACCCGAGGAAGGGTGGATGA
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protein sequence of NO19G01170.1

>NO19G01170.1-protein ID=NO19G01170.1-protein|Name=NO19G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MPRVHFPLLSLSALLLLFPLLLYTPPPLAHAIEIKWTPADGEGTGPMPAS
KKYRDQLERLGQLEAEQAQRDREREAAAATAPRRSSGSGGHPRPSSSSPP
PQVLRQQQQPQQQRQPVGLLGSLVLGIRRHPLTPAMLLASSFAYFNIRRA
AKKTGCIVSKSPHLTIWEPPISYLSKLLNDELPFLSPSSSLPSSSLNCSP
ASFERLHRYRSKKVTGREGEKEGEGDLEEGLLVRESLAVGKGEVVYRKAV
GLVRTLRLLDAASSSSSSSLGSFYSSETGEEGVFVTKRSMVPGDGRRGGG
GALGQWMLMPVRIARREGRAVVGKEKKSKKKKTTKKRKMAEEGGSSGSSS
SSSNNNNNNNKKKNVEAVYEEVFLRSLPGCPWRGELRLSASWQQAGGKGG
KREGEVIVEVAWFTPCSSSPSLPPSFQQQVAARLLQEAQALMEREMAMHK
VRERQQEQFASDAKAAALERRKKERQLLLHPPPDKKKWAKLQRHSGGGGG
GGEKAGRWQPSADLAARRNPRKGG*
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mRNA from alignment at chr19:382368..383942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01170.1 ID=NO19G01170.1|Name=NO19G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at chr19:382368..383942+ (Nannochloropsis oceanica)
ATGCCTCGAGTTCACTTCCCCTTACTCTCCCTCTCTGCCCTCCTTCTCCT
CTTCCCCCTCCTCCTCTATACCCCTCCTCCACTCGCCCACGCCATCGAAA
TAAAATGGACGCCGGCCGACGGCGAGGGGACAGGGCCCATGCCTGCCTCC
AAGAAATACAGAGACCAACTGGAAAGGCTGGGGCAACTAGAGGCAGAGCA
AGCGCAGAGGGATCGAGAGCGGGAAGCGGCTGCCGCTACTGCTCCTCGTC
GTAGTAGCGGTAGTGGTGGTCATCCTCGCCCTTCTTCTTCTTCGCCTCCT
CCTCAAGTTCTACGGCAACAGCAGCAACCTCAGCAACAGCGGCAGCCAGT
AGGTCTATTAGGTAGTCTCGTCCTAGGAATCCGTCGACACCCTCTCACTC
CCGCCATGCTCCTCGCCTCCTCCTTCGCCTATTTTAATATCCGTCGCGCC
GCCAAAAAAACAGGGTGTATTGTGTCTAAATCCCCCCATCTTACCATATG
GGAGCCTCCTATCAGTTATCTATCTAAACTCCTCAACGACGAATTGCCCT
TCCTCTCCCCTTCGTCCTCCCTCCCTTCTTCCTCTTTAAATTGTAGCCCC
GCGTCATTTGAACGCCTGCATCGTTATCGTTCCAAGAAGGTGACAGGAAG
GGAGGGAGAGAAGGAGGGGGAAGGAGACTTGGAAGAAGGGCTACTGGTAC
GAGAGAGTTTGGCGGTGGGGAAAGGGGAGGTGGTTTATCGGAAAGCTGTT
GGCTTGGTGCGCACCCTCCGTTTGCTGGACGCTGCCTCGTCCTCGTCCTC
GTCCTCGCTGGGTAGTTTTTATTCGTCGGAGACAGGGGAGGAGGGAGTGT
TCGTGACAAAGAGGAGCATGGTGCCAGGGGATGGAAGGAGGGGAGGGGGA
GGAGCGCTAGGACAGTGGATGTTGATGCCTGTCCGGATTGCAAGGAGGGA
AGGGAGGGCGGTGGTGGGGAAGGAGAAGAAGAGCAAGAAGAAGAAGACGA
CGAAGAAAAGGAAGATGGCAGAGGAGGGGGGTAGCAGCGGTAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAAGAAGAAGAATGTTGAAGC
TGTCTATGAAGAAGTCTTCCTTCGCTCCCTCCCTGGATGCCCTTGGAGGG
GCGAGCTGCGTCTCTCTGCCTCCTGGCAGCAAGCGGGAGGGAAGGGAGGG
AAAAGAGAGGGCGAAGTGATTGTCGAAGTCGCCTGGTTCACTCCCTGCAG
CAGTTCTCCCTCCCTCCCTCCCTCCTTCCAACAGCAGGTGGCCGCCCGCT
TGTTGCAGGAGGCTCAAGCGCTGATGGAGAGAGAGATGGCAATGCACAAA
GTGCGCGAACGGCAACAAGAACAATTTGCCTCGGACGCGAAAGCAGCCGC
TCTGGAACGGCGAAAGAAGGAGAGACAACTCCTTCTCCACCCTCCCCCAG
ACAAGAAGAAGTGGGCGAAATTACAGCGGCATTCTGGAGGAGGAGGAGGA
GGGGGAGAAAAGGCAGGGCGGTGGCAGCCGAGCGCGGACTTGGCAGCGAG
GCGGAACCCGAGGAAGGGTGGATGA
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Coding sequence (CDS) from alignment at chr19:382368..383942+

>NO19G01170.1 ID=NO19G01170.1|Name=NO19G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr19:382368..383942+ (Nannochloropsis oceanica)
ATGCCTCGAGTTCACTTCCCCTTACTCTCCCTCTCTGCCCTCCTTCTCCT
CTTCCCCCTCCTCCTCTATACCCCTCCTCCACTCGCCCACGCCATCGAAA
TAAAATGGACGCCGGCCGACGGCGAGGGGACAGGGCCCATGCCTGCCTCC
AAGAAATACAGAGACCAACTGGAAAGGCTGGGGCAACTAGAGGCAGAGCA
AGCGCAGAGGGATCGAGAGCGGGAAGCGGCTGCCGCTACTGCTCCTCGTC
GTAGTAGCGGTAGTGGTGGTCATCCTCGCCCTTCTTCTTCTTCGCCTCCT
CCTCAAGTTCTACGGCAACAGCAGCAACCTCAGCAACAGCGGCAGCCAGT
AGGTCTATTAGGTAGTCTCGTCCTAGGAATCCGTCGACACCCTCTCACTC
CCGCCATGCTCCTCGCCTCCTCCTTCGCCTATTTTAATATCCGTCGCGCC
GCCAAAAAAACAGGGTGTATTGTGTCTAAATCCCCCCATCTTACCATATG
GGAGCCTCCTATCAGTTATCTATCTAAACTCCTCAACGACGAATTGCCCT
TCCTCTCCCCTTCGTCCTCCCTCCCTTCTTCCTCTTTAAATTGTAGCCCC
GCGTCATTTGAACGCCTGCATCGTTATCGTTCCAAGAAGGTGACAGGAAG
GGAGGGAGAGAAGGAGGGGGAAGGAGACTTGGAAGAAGGGCTACTGGTAC
GAGAGAGTTTGGCGGTGGGGAAAGGGGAGGTGGTTTATCGGAAAGCTGTT
GGCTTGGTGCGCACCCTCCGTTTGCTGGACGCTGCCTCGTCCTCGTCCTC
GTCCTCGCTGGGTAGTTTTTATTCGTCGGAGACAGGGGAGGAGGGAGTGT
TCGTGACAAAGAGGAGCATGGTGCCAGGGGATGGAAGGAGGGGAGGGGGA
GGAGCGCTAGGACAGTGGATGTTGATGCCTGTCCGGATTGCAAGGAGGGA
AGGGAGGGCGGTGGTGGGGAAGGAGAAGAAGAGCAAGAAGAAGAAGACGA
CGAAGAAAAGGAAGATGGCAGAGGAGGGGGGTAGCAGCGGTAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAAGAAGAAGAATGTTGAAGC
TGTCTATGAAGAAGTCTTCCTTCGCTCCCTCCCTGGATGCCCTTGGAGGG
GCGAGCTGCGTCTCTCTGCCTCCTGGCAGCAAGCGGGAGGGAAGGGAGGG
AAAAGAGAGGGCGAAGTGATTGTCGAAGTCGCCTGGTTCACTCCCTGCAG
CAGTTCTCCCTCCCTCCCTCCCTCCTTCCAACAGCAGGTGGCCGCCCGCT
TGTTGCAGGAGGCTCAAGCGCTGATGGAGAGAGAGATGGCAATGCACAAA
GTGCGCGAACGGCAACAAGAACAATTTGCCTCGGACGCGAAAGCAGCCGC
TCTGGAACGGCGAAAGAAGGAGAGACAACTCCTTCTCCACCCTCCCCCAG
ACAAGAAGAAGTGGGCGAAATTACAGCGGCATTCTGGAGGAGGAGGAGGA
GGGGGAGAAAAGGCAGGGCGGTGGCAGCCGAGCGCGGACTTGGCAGCGAG
GCGGAACCCGAGGAAGGGTGGATGA
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Synonyms
Publications