NO19G01160, NO19G01160 (gene) Nannochloropsis oceanica

Overview
NameNO19G01160
Unique NameNO19G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr19:381062..381769 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:381062..381769 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO19G01160 vs. NCBI_GenBank
Match: XP_005853439.1 (hypothetical protein NGA_0427200 [Nannochloropsis gaditana CCMP526] >EKU22920.1 hypothetical protein NGA_0427200 [Nannochloropsis gaditana CCMP526] >EWM23618.1 hypothetical protein Naga_100137g8 [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 7.900e-81
Identity = 167/238 (70.17%), Postives = 190/238 (79.83%), Query Frame = 0 
Query:    8 SSSCSNRSSNFLARLLL--SSFLLVDLFPAPTTAFLPPTIVPSTPSPQTSSNHPYHQHELSHLLPPSQLSSAPMTDGGSRTRSNIFPPPLMSFYGEQRRKLEEEAEAKQMEWANNFNELIVTQGPELCVCGYEGYVRSGSKGAVCVYCDEE-EGE-------EGLQSCSSLSFTTLEELLADPRMDGGIKEQVAERVMSYEPDVEVAVLFAFSGQVGLNVLRPTYPPKFLYETLKGKK 236
            + +C  RS   +A  L+  S FL  D  PAP TAFL   + P+ PS Q ++  P +   +SHLLPPSQLSSAPMTDGG+RTRS+IFPPPLMSFYGEQRRKL+EE EAKQMEWA +FNELIVTQG ELCVCGYEGYVRSGSKGAV VYCD+E EGE        GL +CSSLSFTTLEELLADPRMD G+K Q++ERV SYEPD EVAVLFA++GQVGLNVLRP YPPKFL+ETL+GKK
Sbjct:    3 TQNCPGRSGPRVAAALVIFSCFLASDFSPAPVTAFL--LVSPAVPSLQKATGTPQNL-LVSHLLPPSQLSSAPMTDGGTRTRSSIFPPPLMSFYGEQRRKLQEETEAKQMEWAKHFNELIVTQGQELCVCGYEGYVRSGSKGAVAVYCDDEAEGEGGAEGQGGGLHTCSSLSFTTLEELLADPRMDDGVKAQLSERVTSYEPDSEVAVLFAYNGQVGLNVLRPQYPPKFLFETLRGKK 237
The following BLAST results are available for this feature:
BLAST of NO19G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853439.17.900e-8170.17hypothetical protein NGA_0427200 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004451NSK004451Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01160.1NO19G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641192gene_7510Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100137g8gene6835Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01160.1NO19G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01160 ID=NO19G01160|Name=NO19G01160|organism=Nannochloropsis oceanica|type=gene|length=708bp
ATGATCACAATAAGCAGTCGCAGCAGCAGTTGCAGCAACAGGAGCAGCAA
TTTCCTCGCCCGTCTCCTCCTCTCCTCCTTCCTCCTTGTTGACCTTTTCC
CCGCCCCCACCACGGCCTTCCTCCCTCCCACCATTGTCCCGTCCACGCCA
TCCCCGCAGACTTCTTCAAATCACCCCTATCATCAGCACGAGCTATCCCA
TCTCCTCCCTCCTTCACAATTATCGTCTGCTCCCATGACAGATGGCGGGT
CAAGGACGCGCAGCAACATTTTCCCTCCTCCCCTCATGTCGTTTTATGGA
GAGCAACGCCGGAAGCTGGAAGAGGAAGCAGAAGCAAAGCAAATGGAGTG
GGCAAATAATTTCAACGAATTGATTGTGACGCAAGGACCGGAATTGTGCG
TTTGTGGATACGAGGGATACGTGCGGTCAGGGAGCAAGGGAGCAGTTTGT
GTGTATTGTGATGAGGAGGAAGGGGAGGAGGGGCTACAATCCTGTTCCTC
CCTGTCTTTCACGACACTCGAAGAGCTCTTGGCCGACCCCAGGATGGACG
GGGGCATAAAGGAACAAGTCGCTGAAAGGGTGATGAGCTACGAGCCGGAT
GTGGAAGTGGCTGTCCTTTTTGCGTTCTCCGGACAGGTGGGACTAAACGT
GTTGAGACCCACCTATCCGCCCAAGTTTTTATATGAGACCTTGAAGGGAA
AGAAGTAG
back to top

protein sequence of NO19G01160.1

>NO19G01160.1-protein ID=NO19G01160.1-protein|Name=NO19G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MITISSRSSSCSNRSSNFLARLLLSSFLLVDLFPAPTTAFLPPTIVPSTP
SPQTSSNHPYHQHELSHLLPPSQLSSAPMTDGGSRTRSNIFPPPLMSFYG
EQRRKLEEEAEAKQMEWANNFNELIVTQGPELCVCGYEGYVRSGSKGAVC
VYCDEEEGEEGLQSCSSLSFTTLEELLADPRMDGGIKEQVAERVMSYEPD
VEVAVLFAFSGQVGLNVLRPTYPPKFLYETLKGKK*
back to top
Synonyms
Publications