NO19G01160.1, NO19G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01160.1
Unique NameNO19G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr19:381062..381769 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:381062..381769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01160.1 vs.
Match: XP_005853439.1 (hypothetical protein NGA_0427200 [Nannochloropsis gaditana CCMP526]; EKU22920.1 hypothetical protein NGA_0427200 [Nannochloropsis gaditana CCMP526]; EWM23618.1 hypothetical protein Naga_100137g8 [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.000e-80
Identity = 167/238 (70.17%), Postives = 190/238 (79.83%), Query Frame = 0 
Query:    8 SSSCSNRSSNFLARLLL--SSFLLVDLFPAPTTAFLPPTIVPSTPSPQTSSNHPYHQHELSHLLPPSQLSSAPMTDGGSRTRSNIFPPPLMSFYGEQRRKLEEEAEAKQMEWANNFNELIVTQGPELCVCGYEGYVRSGSKGAVCVYCDEE-EGE-------EGLQSCSSLSFTTLEELLADPRMDGGIKEQVAERVMSYEPDVEVAVLFAFSGQVGLNVLRPTYPPKFLYETLKGKK 236
            + +C  RS   +A  L+  S FL  D  PAP TAFL   + P+ PS Q ++  P +   +SHLLPPSQLSSAPMTDGG+RTRS+IFPPPLMSFYGEQRRKL+EE EAKQMEWA +FNELIVTQG ELCVCGYEGYVRSGSKGAV VYCD+E EGE        GL +CSSLSFTTLEELLADPRMD G+K Q++ERV SYEPD EVAVLFA++GQVGLNVLRP YPPKFL+ETL+GKK
Sbjct:    3 TQNCPGRSGPRVAAALVIFSCFLASDFSPAPVTAFL--LVSPAVPSLQKATGTPQNLL-VSHLLPPSQLSSAPMTDGGTRTRSSIFPPPLMSFYGEQRRKLQEETEAKQMEWAKHFNELIVTQGQELCVCGYEGYVRSGSKGAVAVYCDDEAEGEGGAEGQGGGLHTCSSLSFTTLEELLADPRMDDGVKAQLSERVTSYEPDSEVAVLFAYNGQVGLNVLRPQYPPKFLFETLRGKK 237
The following BLAST results are available for this feature:
BLAST of NO19G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853439.11.000e-8070.17hypothetical protein NGA_0427200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01160NO19G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01160.1NO19G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01160.1.cds1NO19G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01160.1 ID=NO19G01160.1|Name=NO19G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ATGATCACAATAAGCAGTCGCAGCAGCAGTTGCAGCAACAGGAGCAGCAA
TTTCCTCGCCCGTCTCCTCCTCTCCTCCTTCCTCCTTGTTGACCTTTTCC
CCGCCCCCACCACGGCCTTCCTCCCTCCCACCATTGTCCCGTCCACGCCA
TCCCCGCAGACTTCTTCAAATCACCCCTATCATCAGCACGAGCTATCCCA
TCTCCTCCCTCCTTCACAATTATCGTCTGCTCCCATGACAGATGGCGGGT
CAAGGACGCGCAGCAACATTTTCCCTCCTCCCCTCATGTCGTTTTATGGA
GAGCAACGCCGGAAGCTGGAAGAGGAAGCAGAAGCAAAGCAAATGGAGTG
GGCAAATAATTTCAACGAATTGATTGTGACGCAAGGACCGGAATTGTGCG
TTTGTGGATACGAGGGATACGTGCGGTCAGGGAGCAAGGGAGCAGTTTGT
GTGTATTGTGATGAGGAGGAAGGGGAGGAGGGGCTACAATCCTGTTCCTC
CCTGTCTTTCACGACACTCGAAGAGCTCTTGGCCGACCCCAGGATGGACG
GGGGCATAAAGGAACAAGTCGCTGAAAGGGTGATGAGCTACGAGCCGGAT
GTGGAAGTGGCTGTCCTTTTTGCGTTCTCCGGACAGGTGGGACTAAACGT
GTTGAGACCCACCTATCCGCCCAAGTTTTTATATGAGACCTTGAAGGGAA
AGAAGTAG
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protein sequence of NO19G01160.1

>NO19G01160.1-protein ID=NO19G01160.1-protein|Name=NO19G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MITISSRSSSCSNRSSNFLARLLLSSFLLVDLFPAPTTAFLPPTIVPSTP
SPQTSSNHPYHQHELSHLLPPSQLSSAPMTDGGSRTRSNIFPPPLMSFYG
EQRRKLEEEAEAKQMEWANNFNELIVTQGPELCVCGYEGYVRSGSKGAVC
VYCDEEEGEEGLQSCSSLSFTTLEELLADPRMDGGIKEQVAERVMSYEPD
VEVAVLFAFSGQVGLNVLRPTYPPKFLYETLKGKK*
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mRNA from alignment at chr19:381062..381769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01160.1 ID=NO19G01160.1|Name=NO19G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp|location=Sequence derived from alignment at chr19:381062..381769- (Nannochloropsis oceanica)
ATGATCACAATAAGCAGTCGCAGCAGCAGTTGCAGCAACAGGAGCAGCAA
TTTCCTCGCCCGTCTCCTCCTCTCCTCCTTCCTCCTTGTTGACCTTTTCC
CCGCCCCCACCACGGCCTTCCTCCCTCCCACCATTGTCCCGTCCACGCCA
TCCCCGCAGACTTCTTCAAATCACCCCTATCATCAGCACGAGCTATCCCA
TCTCCTCCCTCCTTCACAATTATCGTCTGCTCCCATGACAGATGGCGGGT
CAAGGACGCGCAGCAACATTTTCCCTCCTCCCCTCATGTCGTTTTATGGA
GAGCAACGCCGGAAGCTGGAAGAGGAAGCAGAAGCAAAGCAAATGGAGTG
GGCAAATAATTTCAACGAATTGATTGTGACGCAAGGACCGGAATTGTGCG
TTTGTGGATACGAGGGATACGTGCGGTCAGGGAGCAAGGGAGCAGTTTGT
GTGTATTGTGATGAGGAGGAAGGGGAGGAGGGGCTACAATCCTGTTCCTC
CCTGTCTTTCACGACACTCGAAGAGCTCTTGGCCGACCCCAGGATGGACG
GGGGCATAAAGGAACAAGTCGCTGAAAGGGTGATGAGCTACGAGCCGGAT
GTGGAAGTGGCTGTCCTTTTTGCGTTCTCCGGACAGGTGGGACTAAACGT
GTTGAGACCCACCTATCCGCCCAAGTTTTTATATGAGACCTTGAAGGGAA
AGAAGTAG
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Coding sequence (CDS) from alignment at chr19:381062..381769-

>NO19G01160.1 ID=NO19G01160.1|Name=NO19G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr19:381062..381769- (Nannochloropsis oceanica)
ATGATCACAATAAGCAGTCGCAGCAGCAGTTGCAGCAACAGGAGCAGCAA
TTTCCTCGCCCGTCTCCTCCTCTCCTCCTTCCTCCTTGTTGACCTTTTCC
CCGCCCCCACCACGGCCTTCCTCCCTCCCACCATTGTCCCGTCCACGCCA
TCCCCGCAGACTTCTTCAAATCACCCCTATCATCAGCACGAGCTATCCCA
TCTCCTCCCTCCTTCACAATTATCGTCTGCTCCCATGACAGATGGCGGGT
CAAGGACGCGCAGCAACATTTTCCCTCCTCCCCTCATGTCGTTTTATGGA
GAGCAACGCCGGAAGCTGGAAGAGGAAGCAGAAGCAAAGCAAATGGAGTG
GGCAAATAATTTCAACGAATTGATTGTGACGCAAGGACCGGAATTGTGCG
TTTGTGGATACGAGGGATACGTGCGGTCAGGGAGCAAGGGAGCAGTTTGT
GTGTATTGTGATGAGGAGGAAGGGGAGGAGGGGCTACAATCCTGTTCCTC
CCTGTCTTTCACGACACTCGAAGAGCTCTTGGCCGACCCCAGGATGGACG
GGGGCATAAAGGAACAAGTCGCTGAAAGGGTGATGAGCTACGAGCCGGAT
GTGGAAGTGGCTGTCCTTTTTGCGTTCTCCGGACAGGTGGGACTAAACGT
GTTGAGACCCACCTATCCGCCCAAGTTTTTATATGAGACCTTGAAGGGAA
AGAAGTAG
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Synonyms
Publications