NO19G01140, NO19G01140 (gene) Nannochloropsis oceanica

Overview
NameNO19G01140
Unique NameNO19G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3444
Alignment locationchr19:376841..380284 +

Link to JBrowse

Properties
Property NameValue
DescriptionComplex 1 LYR protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:376841..380284 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_012207923.1 (hypothetical protein SPRG_13680 [Saprolegnia parasitica CBS 223.65] >KDO21367.1 hypothetical protein SPRG_13680 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-10
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHV 106
            SLRS  L GYRRL+R   + FVGD YAI +AR  +RA F ++R   + + +  ++ GI E E M   NIVQ + N++G++ V L      K ++ E +T V
Sbjct:    2 SLRSQALWGYRRLVRASEKAFVGDVYAITEARKAIRANFAENRAETDAETIQAMVKGIDEAESMLLFNIVQGKKNESGSFAVKLTDPQKSKMRKDEELTAV 102
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: OWZ15848.1 (hypothetical protein PHMEG_00010439 [Phytophthora megakarya])

HSP 1 Score: 73.2 bits (178), Expect = 7.300e-10
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARL----NDAGNYEVNLKPEVHLKGKEHEMMTHVDDRLVGDTVVV 117
            S+R  +LGGYRRLLR   Q F GD YA  QAR+ LR  F  + HV +  +L  LI GI E E M   +IVQ R      DA  +EV L        ++ E +T + ++   + +V+
Sbjct:    2 SVRVQVLGGYRRLLRASRQAFRGDVYATQQARVALRENFTANSHVSDETQLQELIKGIDEAEGMLLHHIVQGRAKQQDGDATRFEVKLTDPQREAMRKDEEITPLTEKSANEPLVM 117
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_024384033.1 (complex III assembly factor LYRM7-like [Physcomitrella patens] >PNR47955.1 hypothetical protein PHYPA_012428 [Physcomitrella patens])

HSP 1 Score: 72.8 bits (177), Expect = 9.600e-10
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPE 92
            S R  +L  +R LLR R Q F GD   +  +  Q+R EF  HR+V   +EL+ L+   RE  E    NIVQA+LN+ GNYEV LK E
Sbjct:    3 SARGEVLALFRSLLRTRKQCFAGDSEMLAASAKQIRDEFEGHRNVGAGEELDKLVTKAREAVEFMKVNIVQAKLNERGNYEVKLKSE 89
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: GBG31581.1 (Complex III assembly factor LYRM7 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 72.0 bits (175), Expect = 1.600e-9
Identity = 36/85 (42.35%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:    7 RSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEV-NLKP 91
            +++++ GYRRLLR R ++F GD  A+ ++++ LRA F  +RH  + + +N +I  I E E+M    +VQARLN+ GNYE+ ++KP
Sbjct:    3 KAAVVQGYRRLLRARGKLFNGDSRALRESQVALRAAFEVNRHEADANRINDMIKDIGEAEDMMLHGLVQARLNERGNYEMQDVKP 87
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_008908060.1 (hypothetical protein PPTG_12658 [Phytophthora parasitica INRA-310] >ETI43133.1 hypothetical protein F443_11844 [Phytophthora parasitica P1569] >ETK83188.1 hypothetical protein L915_11548 [Phytophthora parasitica] >ETL36580.1 hypothetical protein L916_11465 [Phytophthora parasitica] >ETL89788.1 hypothetical protein L917_11332 [Phytophthora parasitica] >ETM43062.1 hypothetical protein L914_11384 [Phytophthora parasitica] >ETN06568.1 hypothetical protein PPTG_12658 [Phytophthora parasitica INRA-310] >ETO71779.1 hypothetical protein F444_11931 [Phytophthora parasitica P1976] >ETP12924.1 hypothetical protein F441_11801 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 71.2 bits (173), Expect = 2.800e-9
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLND-----AGNYEVNL-KPEVHLKGKEHEMM 103
            S+R  +LGGYRRLLR   Q F GD YA+ QAR  LR  F+ +  V + ++L+ L+ GI E E M   NIVQ R        A  +EV L  P+     ++ E+M
Sbjct:    2 SVRVQVLGGYRRLLRASRQAFRGDAYALQQARAALRDNFMANSQVSDKEQLDELVKGIDEAESMLLHNIVQGRAKQEEGEVAPRFEVKLTDPQRKAMRQDEEIM 105
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: ETP40995.1 (hypothetical protein F442_11757 [Phytophthora parasitica P10297])

HSP 1 Score: 71.2 bits (173), Expect = 2.800e-9
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMM 103
            S+R  +LGGYRRLLR   Q F GD YA+ QAR  LR  F+ +  V + ++L+ L+ GI E E M   NIVQ R       EV  + EV L   + + M
Sbjct:    2 SVRVQVLGGYRRLLRASRQAFRGDAYALQQARAALRDNFMANSQVSDKEQLDELVKGIDEAESMLLHNIVQGRAKQVEG-EVAPRFEVKLTDPQRKAM 98
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: KUF77028.1 (Mitochondrial zinc maintenance protein 1 [Phytophthora nicotianae])

HSP 1 Score: 70.9 bits (172), Expect = 3.600e-9
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLND-----AGNYEVNL-KPEVHLKGKEHEMM 103
            S+R  +LGGYRRLLR   Q F GD YA+ QAR  LR  F+ +  V + ++L+ L+ GI E E M   NIVQ R        A  +EV L  P+     ++ E+M
Sbjct:    2 SVRVQVLGGYRRLLRASRQAFRGDAYALXQARAALRDNFMANSQVSDKEQLDELVKGIDEAESMLLHNIVQGRAKQEEGEVAPRFEVKLTDPQRKAMRQDEEIM 105
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: OAE27462.1 (hypothetical protein AXG93_3911s1440 [Marchantia polymorpha subsp. ruderalis] >PTQ36762.1 hypothetical protein MARPO_0061s0038 [Marchantia polymorpha])

HSP 1 Score: 70.5 bits (171), Expect = 4.800e-9
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0 
Query:    1 MATTSLRS-SILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPE 92
            MAT S R+   +  +R LLR+R + F GD+ A+  +  Q+R EF  +RHV +   L+ L+A  RE  +  + N+VQA+LND GNYE+ L+ E
Sbjct:    1 MATASSRAGDAISIFRALLRVRREAFAGDKQALKLSAAQIRQEFEANRHVTDEATLSELLAQGREAVDFIALNVVQAKLNDRGNYEMKLEKE 92
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_002183053.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45271.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.7 bits (169), Expect = 8.100e-9
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHR-HVQNPDELNGLIAGIREVEEMFSENIVQARLN-DAGNYEVNLKPEVHLKGKEHEMM 103
            S ++ +  GYRRL R R  +F GD  A+ ++R+ ++ EF+K+R  V   ++  GL+  + E E+M    I +  LN   GNYE+ +KPE H++G EH  M
Sbjct:    2 SAQARVFSGYRRLFRARRNLFEGDVQAMKESRVAIKQEFVKNRGAVIAGEQFEGLLTMVDEAEDMLRHGIARGNLNPGTGNYEIKIKPE-HVEGVEHSNM 100
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_002737119.1 (PREDICTED: complex III assembly factor LYRM7-like [Saccoglossus kowalevskii])

HSP 1 Score: 68.9 bits (167), Expect = 1.400e-8
Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:    6 LRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHL 95
            +RS +L  ++ L R RL VF GDQYA+   R ++  EF K++   + +++ GL+   ++ E +  + ++QA LND GNYE+ ++ E  L
Sbjct:    1 MRSKVLACFKSLHRARLDVFKGDQYALAVCRSRINDEFQKNKKETDAEKIQGLLKLAKDTETLLRKTVIQAVLNDKGNYELKIREETEL 89
The following BLAST results are available for this feature:
BLAST of NO19G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012207923.12.500e-1040.59hypothetical protein SPRG_13680 [Saprolegnia paras... [more]
OWZ15848.17.300e-1038.79hypothetical protein PHMEG_00010439 [Phytophthora ... [more]
XP_024384033.19.600e-1045.98complex III assembly factor LYRM7-like [Physcomitr... [more]
GBG31581.11.600e-942.35Complex III assembly factor LYRM7 [Aurantiochytriu... [more]
XP_008908060.12.800e-941.35hypothetical protein PPTG_12658 [Phytophthora para... [more]
ETP40995.12.800e-942.86hypothetical protein F442_11757 [Phytophthora para... [more]
KUF77028.13.600e-941.35Mitochondrial zinc maintenance protein 1 [Phytopht... [more]
OAE27462.14.800e-942.39hypothetical protein AXG93_3911s1440 [Marchantia p... [more]
XP_002183053.18.100e-938.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002737119.11.400e-835.96PREDICTED: complex III assembly factor LYRM7-like ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004449NSK004449Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01140.1NO19G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100137g5gene6837Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01140.1NO19G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01140 ID=NO19G01140|Name=NO19G01140|organism=Nannochloropsis oceanica|type=gene|length=3444bp
TGCTGGCGATATCTGCTGCACTTCACTACAAGCCATCTCAACGCTCACGC
TCAACTCCCCCCGTCGGTGGAGCTCGTATTATACTTGCTGTACAACAGTA
GCTTGTCGCGAGGTGATAGACCAAGACCTCTGCTGCTATCTTTTATTCAC
AGCGTCATACGATTGTCTTACCGAAAGATACTTTTACTTCACTTAAGAGA
CGAAGTGCAGCGCATTCCTCTCCTACCCTCTCAGCTACATTACACGGGAT
ACACAACACGGCCGCTGTCGTTGCTGCCGCTACCACTATGGCCACTACAA
GCCTGCGGAGCAGTATCTTGGGCGGATACCGGCGGTTGTTGCGGCTGCGC
TTGCAGGTGTTTGTGGGAGACCAGTATGCGATTGACCAAGCCCGGCTTCA
GCTTCGCGCCGAATTCCTCAAGCATCGGgtaagtactgggttagtatagg
gaaaagggagggaggaaagatacgaaggagaggtgtcatgcttatgatgt
ggagagtgtttatttctctgatagtgttattgggttccctggcgtgcccc
cctgctccctcgcgctgacctcccctccctcgcccccttcattccccttt
ccatctctccttaagCACGTCCAGAACCCGGACGAACTAAATGGCCTGAT
TGCAGGCATTCGAGAAGTAGAAGAAATGTTTTCTGAGAACATCGTGCAGG
CGCGCTTGAATGACGCGGGGAATTACGAGGTGAATTTGAAGCCAGAAGTT
CATTTGAAGGGAAAAGAGCACGAGATGATGACCCATGTGGATGATCGACT
AGTAGGAGATACCGTGGTGGTGGAGCGGAGCAAGGCATCAAAAGAAGACG
ATGGAGGTTGTTGTGGAGGTGGCCCAGGGGATGAGAAGAATTAGAAGAAG
TCAAAGAGAAAAGAGAAGAAATGATGGTATGGTGTGTCCAAGAGAGATTT
TTTTTCTTTATATTCGAGGGGTTGCCCCGTCTTTCCTTTCTATACCTTTA
CAAGTTTCGACTTTGAATTCTCGTTCGCCTACCGCTTAGATGTAATACTC
CGGCGAAAAGCCTGTATCCCCATTGCCAATGGTCTGTTTTGCGTGTCGTG
TTGTAGTCCATGTTTTAAGATATGCCAAGACCTTATATGGGTGGTTTCCT
TCCTGTTAGTTTTTTCTTCTCTTCATTTTCTCCTCTCTCCTTCTCAAGAC
TGTAATTCTAATGTCCTTCGCTTGCGTTTCACCTACTCTCTCTTCCTTCA
CTCCATTATTCTCTTTCCTTTCCATGATTCAACGCTAGTGTGTGCTATTT
GGATGTACCCAGACCGCCCTTCTTAATCGAAGGCGCCACTGGCTGGTGTC
TTGGACGAGATGCCTTAGAGGAGGAGGAAAGGGGGGAGGGGGAGGAGGCA
GACGAGTTGCTTGCCGCCGCCTCCTTCTTCTTCATGGTAACTGTCCTTTT
TGGAACGATATTTTTTACTACAGGTGGTGGAGAAATCGTGCCTGATCCTC
TTGATACTCCTGCACCTGCCCTTGCTGCTCCTGCTGCTCCACTTCCGACT
CGCCCTCCTGCTGATTTGCTTGACACTTTTTTTTTTAACTTCTTGACAGG
CGCTGCCACTGCCGGCGTCTTCGTGGTGGTGATGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGATGCAACTCTTGTCGCTATAACCACCACTG
ATGCTGCCGCTGGAAGGAGTGGTGACTTTCAGCGTGCCTGCCACAGGAGG
AGAGGTGGGGGGCATGACGGCCTGTGTCGTCTTAACTGGCTCCGTGGTCG
CAGCTGGTGATGCTAGTACTGCTGCTGGTGCAACAACTTCTTCCCCCTTA
TTCTCCTCCTCCTCTTTTACCGGTACTACAGCTGCTGGTGCTGGTGCTGC
CGCTGCTGCTGTTGTGGGAGGCACGCTACTGCTGCTGTTGATCTTCATGG
TCAATTTTCCCACCTCGTTCTTTAAAATCTGATTATCATCCTCCAAAGCT
GAAACCACCTGCTGCAGCTTTTCCTCTCTCTCCAGTGCCTCCTCTGCCAC
CTCCCTCTCAGCCGCCAGCCTCTTTTTGAACACCTTTCGTTCCTTCTCGA
ACATCTCCTCCATCTCCTCAATCTCCTTCCCCTCCTCGTCATCCCTCGTC
CTAGCCGCCAACAAACTTTCCAATTTCCCTACCTCCTCTTTCCGCTTCCT
CCCTTCCTGCTCCACGGCTACCCTCACTGCCTTGCCGATCGCTTCCTGTG
CCTCAATCCTCCATCTCTTCCTCTCATTCTCCAACTCTTCCTCTACCCCT
GCTTCCTTCTCCTTGGCTAATGCTAATGCCTCTGCTGCCTCCTTCTGAAT
TTTTAAAAGTTTTTCATCTTGTTCACGTTTCTGTTGACGAAAGAGGGCAT
GGTCCTCAGCGCGTTTCAAGCGCAGCTTGCGCAACTCCTCAAGATGGGCA
GAATGAAGGGAACGGAGACGAGAAAGTTCGCCCTCGAGAGCGCGGACGGC
GGCTTGCAAGTTTCGCGTGCCGCTGCTGCCGGGACGAAGCCAGTGCAGAG
GATCTGTGGAGGGAGGGAGGGAGAGAGAGAGGGAGAGAGGGAGGAAGGGT
TGAAGCTGATTACAGAATTGTTTGCTTTCACCGCGTGAAATTCATTGAAA
ACTTGCTGGTAAGTCTCTGTTGATCTGAGGTGTGGTGCAGGAGAGTGAAG
AGCGTAGAAAGGGAGCATGCGAAGAAAACAGGAGGCTAAGAGTAAACTTA
AGAAATATATGGTAAATTTAATACACACGAAAAAATAATGGGAAATTCAT
GACACAATGAGTCCTCCCTGTCACTCAGTTTACGTACTGGCAAAAGGCAA
GCCCCACACTTTGACAGCCGCGGCGCCCGGGGTGAAGAGGACAAGGAAAC
CAAAGATGAGGAGAGGGGCCATTACAAGCAAACCCTGCCTTTGTCGCGGC
CGATTCTCGTAGCTGCTGCTGACTGGTCTTCTTGAGGCAGGCATGGTGAT
ATGAGTGTGTCCTCGTTAAATGATGTTGCTCCTCGCCGTCGCCCACTTTA
ATGATGGGAGCAAGGCAAGGCAAGGAAGACGCTAAAAAGTTGTCCTGTTG
CTGTCACCGCTGCTTGCGCTGCTGCTGATCCAATAAAGGACAGAGACCTG
TACGGGAACATGGAGGAATGGGGGGAGGGGGAGGGAGGTGTGGTTCGTGA
TTGTGGTCAATGTGCGTTTTATCGAAAAACAAGCGTGGGGCCTTGCCTCC
TCTGCCCACCGACGATCTGTAAGTTTTGAGTTTTCGGTCACGTGCAGTGC
CTGCCCCTGCATCCGGAACTGGGAATATTTCATTAGATGAGTTCATCAGT
CCAAGAGAGCAAGTGGCAGACGCAGATACACACGGAAAACCTCCCCACCC
ACCTCACAAACAACGCATTACAAAGGCCCAAATAAAAGGAAATA
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protein sequence of NO19G01140.1

>NO19G01140.1-protein ID=NO19G01140.1-protein|Name=NO19G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MATTSLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQ
NPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHE
MMTHVDDRLVGDTVVVERSKASKEDDGGCCGGGPGDEKN*
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Synonyms
Publications