NO19G01140.1, NO19G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01140.1
Unique NameNO19G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3257
Alignment locationchr19:376841..380284 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:376841..380284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01140.1 vs.
Match: XP_005853440.1 (hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526]; EKU22921.1 hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526]; EWM23620.1 Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 5.600e-50
Identity = 105/136 (77.21%), Postives = 118/136 (86.76%), Query Frame = 0 
Query:    2 ATTSLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHVDDRLVGDTVVVERSKASKEDD--GGCCGGGPG 136
            A+T L+SS+LGGYRRLLRLRL+VF GDQYA+DQARLQLR EF KHRHVQ+  EL GL+AGIREVEEMFSENIVQ RLN+AGNYEV L+PEVHLKGKEHEM+THVDDRLVGDTVVVERS+A ++    GG C  G G
Sbjct:   11 ASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG 146
The following BLAST results are available for this feature:
BLAST of NO19G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853440.15.600e-5077.21hypothetical protein NGA_0427300 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01140NO19G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01140.1NO19G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01140.1.cds1NO19G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01140.1.cds2NO19G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01140.1 ID=NO19G01140.1|Name=NO19G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3257bp
TGCTGGCGATATCTGCTGCACTTCACTACAAGCCATCTCAACGCTCACGC
TCAACTCCCCCCGTCGGTGGAGCTCGTATTATACTTGCTGTACAACAGTA
GCTTGTCGCGAGGTGATAGACCAAGACCTCTGCTGCTATCTTTTATTCAC
AGCGTCATACGATTGTCTTACCGAAAGATACTTTTACTTCACTTAAGAGA
CGAAGTGCAGCGCATTCCTCTCCTACCCTCTCAGCTACATTACACGGGAT
ACACAACACGGCCGCTGTCGTTGCTGCCGCTACCACTATGGCCACTACAA
GCCTGCGGAGCAGTATCTTGGGCGGATACCGGCGGTTGTTGCGGCTGCGC
TTGCAGGTGTTTGTGGGAGACCAGTATGCGATTGACCAAGCCCGGCTTCA
GCTTCGCGCCGAATTCCTCAAGCATCGGCACGTCCAGAACCCGGACGAAC
TAAATGGCCTGATTGCAGGCATTCGAGAAGTAGAAGAAATGTTTTCTGAG
AACATCGTGCAGGCGCGCTTGAATGACGCGGGGAATTACGAGGTGAATTT
GAAGCCAGAAGTTCATTTGAAGGGAAAAGAGCACGAGATGATGACCCATG
TGGATGATCGACTAGTAGGAGATACCGTGGTGGTGGAGCGGAGCAAGGCA
TCAAAAGAAGACGATGGAGGTTGTTGTGGAGGTGGCCCAGGGGATGAGAA
GAATTAGAAGAAGTCAAAGAGAAAAGAGAAGAAATGATGGTATGGTGTGT
CCAAGAGAGATTTTTTTTCTTTATATTCGAGGGGTTGCCCCGTCTTTCCT
TTCTATACCTTTACAAGTTTCGACTTTGAATTCTCGTTCGCCTACCGCTT
AGATGTAATACTCCGGCGAAAAGCCTGTATCCCCATTGCCAATGGTCTGT
TTTGCGTGTCGTGTTGTAGTCCATGTTTTAAGATATGCCAAGACCTTATA
TGGGTGGTTTCCTTCCTGTTAGTTTTTTCTTCTCTTCATTTTCTCCTCTC
TCCTTCTCAAGACTGTAATTCTAATGTCCTTCGCTTGCGTTTCACCTACT
CTCTCTTCCTTCACTCCATTATTCTCTTTCCTTTCCATGATTCAACGCTA
GTGTGTGCTATTTGGATGTACCCAGACCGCCCTTCTTAATCGAAGGCGCC
ACTGGCTGGTGTCTTGGACGAGATGCCTTAGAGGAGGAGGAAAGGGGGGA
GGGGGAGGAGGCAGACGAGTTGCTTGCCGCCGCCTCCTTCTTCTTCATGG
TAACTGTCCTTTTTGGAACGATATTTTTTACTACAGGTGGTGGAGAAATC
GTGCCTGATCCTCTTGATACTCCTGCACCTGCCCTTGCTGCTCCTGCTGC
TCCACTTCCGACTCGCCCTCCTGCTGATTTGCTTGACACTTTTTTTTTTA
ACTTCTTGACAGGCGCTGCCACTGCCGGCGTCTTCGTGGTGGTGATGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGCAACTCTTGTCGCT
ATAACCACCACTGATGCTGCCGCTGGAAGGAGTGGTGACTTTCAGCGTGC
CTGCCACAGGAGGAGAGGTGGGGGGCATGACGGCCTGTGTCGTCTTAACT
GGCTCCGTGGTCGCAGCTGGTGATGCTAGTACTGCTGCTGGTGCAACAAC
TTCTTCCCCCTTATTCTCCTCCTCCTCTTTTACCGGTACTACAGCTGCTG
GTGCTGGTGCTGCCGCTGCTGCTGTTGTGGGAGGCACGCTACTGCTGCTG
TTGATCTTCATGGTCAATTTTCCCACCTCGTTCTTTAAAATCTGATTATC
ATCCTCCAAAGCTGAAACCACCTGCTGCAGCTTTTCCTCTCTCTCCAGTG
CCTCCTCTGCCACCTCCCTCTCAGCCGCCAGCCTCTTTTTGAACACCTTT
CGTTCCTTCTCGAACATCTCCTCCATCTCCTCAATCTCCTTCCCCTCCTC
GTCATCCCTCGTCCTAGCCGCCAACAAACTTTCCAATTTCCCTACCTCCT
CTTTCCGCTTCCTCCCTTCCTGCTCCACGGCTACCCTCACTGCCTTGCCG
ATCGCTTCCTGTGCCTCAATCCTCCATCTCTTCCTCTCATTCTCCAACTC
TTCCTCTACCCCTGCTTCCTTCTCCTTGGCTAATGCTAATGCCTCTGCTG
CCTCCTTCTGAATTTTTAAAAGTTTTTCATCTTGTTCACGTTTCTGTTGA
CGAAAGAGGGCATGGTCCTCAGCGCGTTTCAAGCGCAGCTTGCGCAACTC
CTCAAGATGGGCAGAATGAAGGGAACGGAGACGAGAAAGTTCGCCCTCGA
GAGCGCGGACGGCGGCTTGCAAGTTTCGCGTGCCGCTGCTGCCGGGACGA
AGCCAGTGCAGAGGATCTGTGGAGGGAGGGAGGGAGAGAGAGAGGGAGAG
AGGGAGGAAGGGTTGAAGCTGATTACAGAATTGTTTGCTTTCACCGCGTG
AAATTCATTGAAAACTTGCTGGTAAGTCTCTGTTGATCTGAGGTGTGGTG
CAGGAGAGTGAAGAGCGTAGAAAGGGAGCATGCGAAGAAAACAGGAGGCT
AAGAGTAAACTTAAGAAATATATGGTAAATTTAATACACACGAAAAAATA
ATGGGAAATTCATGACACAATGAGTCCTCCCTGTCACTCAGTTTACGTAC
TGGCAAAAGGCAAGCCCCACACTTTGACAGCCGCGGCGCCCGGGGTGAAG
AGGACAAGGAAACCAAAGATGAGGAGAGGGGCCATTACAAGCAAACCCTG
CCTTTGTCGCGGCCGATTCTCGTAGCTGCTGCTGACTGGTCTTCTTGAGG
CAGGCATGGTGATATGAGTGTGTCCTCGTTAAATGATGTTGCTCCTCGCC
GTCGCCCACTTTAATGATGGGAGCAAGGCAAGGCAAGGAAGACGCTAAAA
AGTTGTCCTGTTGCTGTCACCGCTGCTTGCGCTGCTGCTGATCCAATAAA
GGACAGAGACCTGTACGGGAACATGGAGGAATGGGGGGAGGGGGAGGGAG
GTGTGGTTCGTGATTGTGGTCAATGTGCGTTTTATCGAAAAACAAGCGTG
GGGCCTTGCCTCCTCTGCCCACCGACGATCTGTAAGTTTTGAGTTTTCGG
TCACGTGCAGTGCCTGCCCCTGCATCCGGAACTGGGAATATTTCATTAGA
TGAGTTCATCAGTCCAAGAGAGCAAGTGGCAGACGCAGATACACACGGAA
AACCTCCCCACCCACCTCACAAACAACGCATTACAAAGGCCCAAATAAAA
GGAAATA
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protein sequence of NO19G01140.1

>NO19G01140.1-protein ID=NO19G01140.1-protein|Name=NO19G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MATTSLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQ
NPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHE
MMTHVDDRLVGDTVVVERSKASKEDDGGCCGGGPGDEKN*
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mRNA from alignment at chr19:376841..380284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01140.1 ID=NO19G01140.1|Name=NO19G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3444bp|location=Sequence derived from alignment at chr19:376841..380284+ (Nannochloropsis oceanica)
TGCTGGCGATATCTGCTGCACTTCACTACAAGCCATCTCAACGCTCACGC
TCAACTCCCCCCGTCGGTGGAGCTCGTATTATACTTGCTGTACAACAGTA
GCTTGTCGCGAGGTGATAGACCAAGACCTCTGCTGCTATCTTTTATTCAC
AGCGTCATACGATTGTCTTACCGAAAGATACTTTTACTTCACTTAAGAGA
CGAAGTGCAGCGCATTCCTCTCCTACCCTCTCAGCTACATTACACGGGAT
ACACAACACGGCCGCTGTCGTTGCTGCCGCTACCACTATGGCCACTACAA
GCCTGCGGAGCAGTATCTTGGGCGGATACCGGCGGTTGTTGCGGCTGCGC
TTGCAGGTGTTTGTGGGAGACCAGTATGCGATTGACCAAGCCCGGCTTCA
GCTTCGCGCCGAATTCCTCAAGCATCGGGTAAGTACTGGGTTAGTATAGG
GAAAAGGGAGGGAGGAAAGATACGAAGGAGAGGTGTCATGCTTATGATGT
GGAGAGTGTTTATTTCTCTGATAGTGTTATTGGGTTCCCTGGCGTGCCCC
CCTGCTCCCTCGCGCTGACCTCCCCTCCCTCGCCCCCTTCATTCCCCTTT
CCATCTCTCCTTAAGCACGTCCAGAACCCGGACGAACTAAATGGCCTGAT
TGCAGGCATTCGAGAAGTAGAAGAAATGTTTTCTGAGAACATCGTGCAGG
CGCGCTTGAATGACGCGGGGAATTACGAGGTGAATTTGAAGCCAGAAGTT
CATTTGAAGGGAAAAGAGCACGAGATGATGACCCATGTGGATGATCGACT
AGTAGGAGATACCGTGGTGGTGGAGCGGAGCAAGGCATCAAAAGAAGACG
ATGGAGGTTGTTGTGGAGGTGGCCCAGGGGATGAGAAGAATTAGAAGAAG
TCAAAGAGAAAAGAGAAGAAATGATGGTATGGTGTGTCCAAGAGAGATTT
TTTTTCTTTATATTCGAGGGGTTGCCCCGTCTTTCCTTTCTATACCTTTA
CAAGTTTCGACTTTGAATTCTCGTTCGCCTACCGCTTAGATGTAATACTC
CGGCGAAAAGCCTGTATCCCCATTGCCAATGGTCTGTTTTGCGTGTCGTG
TTGTAGTCCATGTTTTAAGATATGCCAAGACCTTATATGGGTGGTTTCCT
TCCTGTTAGTTTTTTCTTCTCTTCATTTTCTCCTCTCTCCTTCTCAAGAC
TGTAATTCTAATGTCCTTCGCTTGCGTTTCACCTACTCTCTCTTCCTTCA
CTCCATTATTCTCTTTCCTTTCCATGATTCAACGCTAGTGTGTGCTATTT
GGATGTACCCAGACCGCCCTTCTTAATCGAAGGCGCCACTGGCTGGTGTC
TTGGACGAGATGCCTTAGAGGAGGAGGAAAGGGGGGAGGGGGAGGAGGCA
GACGAGTTGCTTGCCGCCGCCTCCTTCTTCTTCATGGTAACTGTCCTTTT
TGGAACGATATTTTTTACTACAGGTGGTGGAGAAATCGTGCCTGATCCTC
TTGATACTCCTGCACCTGCCCTTGCTGCTCCTGCTGCTCCACTTCCGACT
CGCCCTCCTGCTGATTTGCTTGACACTTTTTTTTTTAACTTCTTGACAGG
CGCTGCCACTGCCGGCGTCTTCGTGGTGGTGATGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGATGCAACTCTTGTCGCTATAACCACCACTG
ATGCTGCCGCTGGAAGGAGTGGTGACTTTCAGCGTGCCTGCCACAGGAGG
AGAGGTGGGGGGCATGACGGCCTGTGTCGTCTTAACTGGCTCCGTGGTCG
CAGCTGGTGATGCTAGTACTGCTGCTGGTGCAACAACTTCTTCCCCCTTA
TTCTCCTCCTCCTCTTTTACCGGTACTACAGCTGCTGGTGCTGGTGCTGC
CGCTGCTGCTGTTGTGGGAGGCACGCTACTGCTGCTGTTGATCTTCATGG
TCAATTTTCCCACCTCGTTCTTTAAAATCTGATTATCATCCTCCAAAGCT
GAAACCACCTGCTGCAGCTTTTCCTCTCTCTCCAGTGCCTCCTCTGCCAC
CTCCCTCTCAGCCGCCAGCCTCTTTTTGAACACCTTTCGTTCCTTCTCGA
ACATCTCCTCCATCTCCTCAATCTCCTTCCCCTCCTCGTCATCCCTCGTC
CTAGCCGCCAACAAACTTTCCAATTTCCCTACCTCCTCTTTCCGCTTCCT
CCCTTCCTGCTCCACGGCTACCCTCACTGCCTTGCCGATCGCTTCCTGTG
CCTCAATCCTCCATCTCTTCCTCTCATTCTCCAACTCTTCCTCTACCCCT
GCTTCCTTCTCCTTGGCTAATGCTAATGCCTCTGCTGCCTCCTTCTGAAT
TTTTAAAAGTTTTTCATCTTGTTCACGTTTCTGTTGACGAAAGAGGGCAT
GGTCCTCAGCGCGTTTCAAGCGCAGCTTGCGCAACTCCTCAAGATGGGCA
GAATGAAGGGAACGGAGACGAGAAAGTTCGCCCTCGAGAGCGCGGACGGC
GGCTTGCAAGTTTCGCGTGCCGCTGCTGCCGGGACGAAGCCAGTGCAGAG
GATCTGTGGAGGGAGGGAGGGAGAGAGAGAGGGAGAGAGGGAGGAAGGGT
TGAAGCTGATTACAGAATTGTTTGCTTTCACCGCGTGAAATTCATTGAAA
ACTTGCTGGTAAGTCTCTGTTGATCTGAGGTGTGGTGCAGGAGAGTGAAG
AGCGTAGAAAGGGAGCATGCGAAGAAAACAGGAGGCTAAGAGTAAACTTA
AGAAATATATGGTAAATTTAATACACACGAAAAAATAATGGGAAATTCAT
GACACAATGAGTCCTCCCTGTCACTCAGTTTACGTACTGGCAAAAGGCAA
GCCCCACACTTTGACAGCCGCGGCGCCCGGGGTGAAGAGGACAAGGAAAC
CAAAGATGAGGAGAGGGGCCATTACAAGCAAACCCTGCCTTTGTCGCGGC
CGATTCTCGTAGCTGCTGCTGACTGGTCTTCTTGAGGCAGGCATGGTGAT
ATGAGTGTGTCCTCGTTAAATGATGTTGCTCCTCGCCGTCGCCCACTTTA
ATGATGGGAGCAAGGCAAGGCAAGGAAGACGCTAAAAAGTTGTCCTGTTG
CTGTCACCGCTGCTTGCGCTGCTGCTGATCCAATAAAGGACAGAGACCTG
TACGGGAACATGGAGGAATGGGGGGAGGGGGAGGGAGGTGTGGTTCGTGA
TTGTGGTCAATGTGCGTTTTATCGAAAAACAAGCGTGGGGCCTTGCCTCC
TCTGCCCACCGACGATCTGTAAGTTTTGAGTTTTCGGTCACGTGCAGTGC
CTGCCCCTGCATCCGGAACTGGGAATATTTCATTAGATGAGTTCATCAGT
CCAAGAGAGCAAGTGGCAGACGCAGATACACACGGAAAACCTCCCCACCC
ACCTCACAAACAACGCATTACAAAGGCCCAAATAAAAGGAAATA
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Coding sequence (CDS) from alignment at chr19:376841..380284+

>NO19G01140.1 ID=NO19G01140.1|Name=NO19G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr19:376841..380284+ (Nannochloropsis oceanica)
ATGGCCACTACAAGCCTGCGGAGCAGTATCTTGGGCGGATACCGGCGGTT
GTTGCGGCTGCGCTTGCAGGTGTTTGTGGGAGACCAGTATGCGATTGACC
AAGCCCGGCTTCAGCTTCGCGCCGAATTCCTCAAGCATCGGCACGTCCAG
AACCCGGACGAACTAAATGGCCTGATTGCAGGCATTCGAGAAGTAGAAGA
AATGTTTTCTGAGAACATCGTGCAGGCGCGCTTGAATGACGCGGGGAATT
ACGAGGTGAATTTGAAGCCAGAAGTTCATTTGAAGGGAAAAGAGCACGAG
ATGATGACCCATGTGGATGATCGACTAGTAGGAGATACCGTGGTGGTGGA
GCGGAGCAAGGCATCAAAAGAAGACGATGGAGGTTGTTGTGGAGGTGGCC
CAGGGGATGAGAAGAATTAG
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Synonyms
Publications