NO19G01140, NO19G01140 (gene) Nannochloropsis oceanica

Overview
NameNO19G01140
Unique NameNO19G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3444
Alignment locationchr19:376841..380284 +

Link to JBrowse

Properties
Property NameValue
DescriptionComplex 1 LYR protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:376841..380284 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_005853440.1 (hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526] >EKU22921.1 hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526] >EWM23620.1 Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 196.1 bits (497), Expect = 7.500e-47
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 0 
Query:    2 ATTSLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHVDDRLVGDTVVVE 118
            A+T L+SS+LGGYRRLLRLRL+VF GDQYA+DQARLQLR EF KHRHVQ+  EL GL+AGIREVEEMFSENIVQ RLN+AGNYEV L+PEVHLKGKEHEM+THVDDRLVGDTVVVE
Sbjct:   11 ASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVE 126
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: CBN76009.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.0 bits (214), Expect = 4.900e-14
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNY 85
            SLR  +LGGYRRL+R+R+  F  D   ++ ++ QLR EF K++ V +P ++ GLI GI EVEEM   NI QARLND GNY
Sbjct:    3 SLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKIAGLIKGINEVEEMLKYNIAQARLNDRGNY 82
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_009837677.1 (hypothetical protein H257_12229 [Aphanomyces astaci] >ETV72891.1 hypothetical protein H257_12229 [Aphanomyces astaci])

HSP 1 Score: 80.9 bits (198), Expect = 3.500e-12
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 0 
Query:    1 MATTSLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLK-PEVHLKGKEHEMMTHVDDRLVGDTVVV 117
            MAT+++R  +LGGYRRLLR   Q F  D+ A+ +AR  +RA FL++R V +   L GLI GI E E M   NIVQ + N+ G ++V L  P+     K+ E+     D   G T VV
Sbjct:    1 MATSTVRVQVLGGYRRLLRASQQTFGADKRAVVEARKAVRAAFLENRDVHDGHALTGLIKGIEEAEAMLLYNIVQGKANEKGVFQVELSDPQASRIRKDEELSELTPDS--GKTPVV 115
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: GAY01816.1 (Hypothetical protein PINS_009658 [Pythium insidiosum])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 48/118 (40.68%), Postives = 66/118 (55.93%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLND------AGNYEVNLKPEVHLKGKEHEMMTHVDDRLVGDTVVV 117
            SLR+ +LGGYRRLLR   Q F GD YAI+QAR+ LR  FL++R VQ+   +  LI GI E E M   NIVQ R  +      A  +EV L        ++ E +T + ++     +V+
Sbjct:    2 SLRTQVLGGYRRLLRASRQTFRGDTYAIEQARVALRENFLQNRDVQDEGIIRELITGIDEAEGMLLHNIVQGRQKEVDAATGAPRFEVQLTDPQRSAMRKDEELTPLTEKSAEQPLVM 119
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: GAX19548.1 (hypothetical protein FisN_19Hh126 [Fistulifera solaris])

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-11
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 0 
Query:    7 RSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQN-PDELNGLIAGIREVEEMFSENIVQARLN-DAGNYEVNLKPEVHLKGKEHEMMTHVDDRLVGDTVVVE 118
            ++ +L GYRRL R R  +F GD  A++++RL ++AEF+K++ V    D   GL+  + E E+M   +IV+  LN D GNY+V +KPE H  G E   +  +  R V   V  E
Sbjct:    6 KARVLSGYRRLFRARKNLFAGDHRAMEESRLAIKAEFVKNKAVPTVGDHFEGLLTMVDEAEDMLRHHIVRGELNQDTGNYQVKIKPE-HTVGAEQTHVEPITQRTVEKLVKPE 117
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: OQR90857.1 (hypothetical protein ACHHYP_05182 [Achlya hypogyna])

HSP 1 Score: 77.4 bits (189), Expect = 3.900e-11
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHV 106
            SLRS  L GYR L+R   Q F GD YAI +AR  +RA F+++R   + + +  ++ GI E E M   NIVQ + N+AG+YEV L      K ++ E +T V
Sbjct:    2 SLRSQALWGYRSLIRASEQAFRGDVYAIKEARKAIRAAFVENRRETDTETIAAMVKGIEEAESMLRFNIVQGKKNEAGSYEVKLTDPQKGKMRKDEELTAV 102
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_008611461.1 (hypothetical protein SDRG_07408 [Saprolegnia diclina VS20] >EQC35177.1 hypothetical protein SDRG_07408 [Saprolegnia diclina VS20])

HSP 1 Score: 76.3 bits (186), Expect = 8.700e-11
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHV 106
            SLRS  L GYRRL+R   + FVGD YAI +AR  +RA F+++R   + + +  ++ GI E E+M   NIVQ + N++G++ V L      K ++ E +T V
Sbjct:    2 SLRSQALWGYRRLVRASERAFVGDVYAITEARKAIRANFVENRAETDTETIQAMVKGITEAEDMLLFNIVQGKKNESGSFAVKLTDPQKSKMRKDEEITAV 102
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: GAX09660.1 (hypothetical protein FisN_19Lh126 [Fistulifera solaris])

HSP 1 Score: 76.3 bits (186), Expect = 8.700e-11
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 0 
Query:    7 RSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQN-PDELNGLIAGIREVEEMFSENIVQARLN-DAGNYEVNLKPEVHLKGKEHEMMTHVD 107
            ++ +L GYRRL R R  +F GDQ A++++RL ++AEF+K++ V    D   GL+  + E E+M   +IV+  LN + GNY+V +KPE H  G +    THV+
Sbjct:    6 KARVLSGYRRLFRARKNLFAGDQRAMEESRLAIKAEFVKNKAVPTVGDHFEGLMTMVDEAEDMLRHHIVRGELNQETGNYQVKIKPE-HTVGDD---QTHVE 103
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: OQS03180.1 (hypothetical protein THRCLA_21220 [Thraustotheca clavata])

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-10
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 0 
Query:    5 SLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHV 106
            S+RS  L GYRRL+R   Q F GD +AI +AR  +R+ ++++R+ ++P  +  ++ GI E E M   NIVQ + ND G++EV L      K ++ E +T V
Sbjct:    2 SVRSKALWGYRRLIRASEQTFRGDLFAISEARKTIRSTYVENRNEKDPAMIEEMVGGIDEAESMLLFNIVQGKKNDTGSFEVRLTDPQKSKMRKDEELTAV 102
[Close]
BLAST of NO19G01140 vs. NCBI_GenBank
Match: XP_008873194.1 (hypothetical protein H310_09019 [Aphanomyces invadans] >ETV98319.1 hypothetical protein H310_09019 [Aphanomyces invadans])

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-10
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:    7 RSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQNPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHEMMTHV 106
            R  +LGGYRRLLR   Q F  D+ A+ +AR  +RA FL++R V +   L+ LI GI E E M   NIVQ + N+ G +EV L      + ++ E +T +
Sbjct:    9 RVHVLGGYRRLLRASQQTFGADKRAVVEARKAVRAAFLENRDVHDTQALSALIKGIDEAEAMLLYNIVQGKANEKGTFEVKLTDPQKSRIRKDEELTEI 107
The following BLAST results are available for this feature:
BLAST of NO19G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853440.17.500e-4783.62hypothetical protein NGA_0427300 [Nannochloropsis ... [more]
CBN76009.14.900e-1453.75conserved unknown protein [Ectocarpus siliculosus][more]
XP_009837677.13.500e-1242.74hypothetical protein H257_12229 [Aphanomyces astac... [more]
GAY01816.12.300e-1140.68Hypothetical protein PINS_009658 [Pythium insidios... [more]
GAX19548.13.000e-1138.94hypothetical protein FisN_19Hh126 [Fistulifera sol... [more]
OQR90857.13.900e-1142.57hypothetical protein ACHHYP_05182 [Achlya hypogyna... [more]
XP_008611461.18.700e-1140.59hypothetical protein SDRG_07408 [Saprolegnia dicli... [more]
GAX09660.18.700e-1141.18hypothetical protein FisN_19Lh126 [Fistulifera sol... [more]
OQS03180.11.100e-1039.60hypothetical protein THRCLA_21220 [Thraustotheca c... [more]
XP_008873194.12.500e-1041.41hypothetical protein H310_09019 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004449NSK004449Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01140.1NO19G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100137g5gene6837Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01140.1NO19G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01140 ID=NO19G01140|Name=NO19G01140|organism=Nannochloropsis oceanica|type=gene|length=3444bp
TGCTGGCGATATCTGCTGCACTTCACTACAAGCCATCTCAACGCTCACGC
TCAACTCCCCCCGTCGGTGGAGCTCGTATTATACTTGCTGTACAACAGTA
GCTTGTCGCGAGGTGATAGACCAAGACCTCTGCTGCTATCTTTTATTCAC
AGCGTCATACGATTGTCTTACCGAAAGATACTTTTACTTCACTTAAGAGA
CGAAGTGCAGCGCATTCCTCTCCTACCCTCTCAGCTACATTACACGGGAT
ACACAACACGGCCGCTGTCGTTGCTGCCGCTACCACTATGGCCACTACAA
GCCTGCGGAGCAGTATCTTGGGCGGATACCGGCGGTTGTTGCGGCTGCGC
TTGCAGGTGTTTGTGGGAGACCAGTATGCGATTGACCAAGCCCGGCTTCA
GCTTCGCGCCGAATTCCTCAAGCATCGGgtaagtactgggttagtatagg
gaaaagggagggaggaaagatacgaaggagaggtgtcatgcttatgatgt
ggagagtgtttatttctctgatagtgttattgggttccctggcgtgcccc
cctgctccctcgcgctgacctcccctccctcgcccccttcattccccttt
ccatctctccttaagCACGTCCAGAACCCGGACGAACTAAATGGCCTGAT
TGCAGGCATTCGAGAAGTAGAAGAAATGTTTTCTGAGAACATCGTGCAGG
CGCGCTTGAATGACGCGGGGAATTACGAGGTGAATTTGAAGCCAGAAGTT
CATTTGAAGGGAAAAGAGCACGAGATGATGACCCATGTGGATGATCGACT
AGTAGGAGATACCGTGGTGGTGGAGCGGAGCAAGGCATCAAAAGAAGACG
ATGGAGGTTGTTGTGGAGGTGGCCCAGGGGATGAGAAGAATTAGAAGAAG
TCAAAGAGAAAAGAGAAGAAATGATGGTATGGTGTGTCCAAGAGAGATTT
TTTTTCTTTATATTCGAGGGGTTGCCCCGTCTTTCCTTTCTATACCTTTA
CAAGTTTCGACTTTGAATTCTCGTTCGCCTACCGCTTAGATGTAATACTC
CGGCGAAAAGCCTGTATCCCCATTGCCAATGGTCTGTTTTGCGTGTCGTG
TTGTAGTCCATGTTTTAAGATATGCCAAGACCTTATATGGGTGGTTTCCT
TCCTGTTAGTTTTTTCTTCTCTTCATTTTCTCCTCTCTCCTTCTCAAGAC
TGTAATTCTAATGTCCTTCGCTTGCGTTTCACCTACTCTCTCTTCCTTCA
CTCCATTATTCTCTTTCCTTTCCATGATTCAACGCTAGTGTGTGCTATTT
GGATGTACCCAGACCGCCCTTCTTAATCGAAGGCGCCACTGGCTGGTGTC
TTGGACGAGATGCCTTAGAGGAGGAGGAAAGGGGGGAGGGGGAGGAGGCA
GACGAGTTGCTTGCCGCCGCCTCCTTCTTCTTCATGGTAACTGTCCTTTT
TGGAACGATATTTTTTACTACAGGTGGTGGAGAAATCGTGCCTGATCCTC
TTGATACTCCTGCACCTGCCCTTGCTGCTCCTGCTGCTCCACTTCCGACT
CGCCCTCCTGCTGATTTGCTTGACACTTTTTTTTTTAACTTCTTGACAGG
CGCTGCCACTGCCGGCGTCTTCGTGGTGGTGATGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGATGCAACTCTTGTCGCTATAACCACCACTG
ATGCTGCCGCTGGAAGGAGTGGTGACTTTCAGCGTGCCTGCCACAGGAGG
AGAGGTGGGGGGCATGACGGCCTGTGTCGTCTTAACTGGCTCCGTGGTCG
CAGCTGGTGATGCTAGTACTGCTGCTGGTGCAACAACTTCTTCCCCCTTA
TTCTCCTCCTCCTCTTTTACCGGTACTACAGCTGCTGGTGCTGGTGCTGC
CGCTGCTGCTGTTGTGGGAGGCACGCTACTGCTGCTGTTGATCTTCATGG
TCAATTTTCCCACCTCGTTCTTTAAAATCTGATTATCATCCTCCAAAGCT
GAAACCACCTGCTGCAGCTTTTCCTCTCTCTCCAGTGCCTCCTCTGCCAC
CTCCCTCTCAGCCGCCAGCCTCTTTTTGAACACCTTTCGTTCCTTCTCGA
ACATCTCCTCCATCTCCTCAATCTCCTTCCCCTCCTCGTCATCCCTCGTC
CTAGCCGCCAACAAACTTTCCAATTTCCCTACCTCCTCTTTCCGCTTCCT
CCCTTCCTGCTCCACGGCTACCCTCACTGCCTTGCCGATCGCTTCCTGTG
CCTCAATCCTCCATCTCTTCCTCTCATTCTCCAACTCTTCCTCTACCCCT
GCTTCCTTCTCCTTGGCTAATGCTAATGCCTCTGCTGCCTCCTTCTGAAT
TTTTAAAAGTTTTTCATCTTGTTCACGTTTCTGTTGACGAAAGAGGGCAT
GGTCCTCAGCGCGTTTCAAGCGCAGCTTGCGCAACTCCTCAAGATGGGCA
GAATGAAGGGAACGGAGACGAGAAAGTTCGCCCTCGAGAGCGCGGACGGC
GGCTTGCAAGTTTCGCGTGCCGCTGCTGCCGGGACGAAGCCAGTGCAGAG
GATCTGTGGAGGGAGGGAGGGAGAGAGAGAGGGAGAGAGGGAGGAAGGGT
TGAAGCTGATTACAGAATTGTTTGCTTTCACCGCGTGAAATTCATTGAAA
ACTTGCTGGTAAGTCTCTGTTGATCTGAGGTGTGGTGCAGGAGAGTGAAG
AGCGTAGAAAGGGAGCATGCGAAGAAAACAGGAGGCTAAGAGTAAACTTA
AGAAATATATGGTAAATTTAATACACACGAAAAAATAATGGGAAATTCAT
GACACAATGAGTCCTCCCTGTCACTCAGTTTACGTACTGGCAAAAGGCAA
GCCCCACACTTTGACAGCCGCGGCGCCCGGGGTGAAGAGGACAAGGAAAC
CAAAGATGAGGAGAGGGGCCATTACAAGCAAACCCTGCCTTTGTCGCGGC
CGATTCTCGTAGCTGCTGCTGACTGGTCTTCTTGAGGCAGGCATGGTGAT
ATGAGTGTGTCCTCGTTAAATGATGTTGCTCCTCGCCGTCGCCCACTTTA
ATGATGGGAGCAAGGCAAGGCAAGGAAGACGCTAAAAAGTTGTCCTGTTG
CTGTCACCGCTGCTTGCGCTGCTGCTGATCCAATAAAGGACAGAGACCTG
TACGGGAACATGGAGGAATGGGGGGAGGGGGAGGGAGGTGTGGTTCGTGA
TTGTGGTCAATGTGCGTTTTATCGAAAAACAAGCGTGGGGCCTTGCCTCC
TCTGCCCACCGACGATCTGTAAGTTTTGAGTTTTCGGTCACGTGCAGTGC
CTGCCCCTGCATCCGGAACTGGGAATATTTCATTAGATGAGTTCATCAGT
CCAAGAGAGCAAGTGGCAGACGCAGATACACACGGAAAACCTCCCCACCC
ACCTCACAAACAACGCATTACAAAGGCCCAAATAAAAGGAAATA
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protein sequence of NO19G01140.1

>NO19G01140.1-protein ID=NO19G01140.1-protein|Name=NO19G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MATTSLRSSILGGYRRLLRLRLQVFVGDQYAIDQARLQLRAEFLKHRHVQ
NPDELNGLIAGIREVEEMFSENIVQARLNDAGNYEVNLKPEVHLKGKEHE
MMTHVDDRLVGDTVVVERSKASKEDDGGCCGGGPGDEKN*
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Synonyms
Publications