NO19G01120, NO19G01120 (gene) Nannochloropsis oceanica

Overview
NameNO19G01120
Unique NameNO19G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr19:369762..371147 -

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Properties
Property NameValue
DescriptionPoly-binding protein 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:369762..371147 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: EWM23629.1 (poly -binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 7.200e-78
Identity = 197/264 (74.62%), Postives = 217/264 (82.20%), Query Frame = 0 
Query:    1 MLNPTVGGPTSPLDDAH-AYHHQXXXXQDNENSAPVGMNEHEDIGTEHGD----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSASLANLSLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMICSL 260
            MLNPTVGGPTSPLDDAH      XXXX      +PVGMN+ +D+G +H +            XXXXXXXXXXXXXXXXXXXXXXX  ASLANLSLSSGLE TTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHIS A+EDDRDPAFR VTVSGSVQEVCSAVELI+RQAGLFE+Q           Y P G+R+VIDS +AGQ+IGKKGATINEIRTQSQARIQVLS++ESAEEGAL MERV++L+G+AEACR+AHKMICSL
Sbjct:  104 MLNPTVGGPTSPLDDAHYXXXXXXXXXXXXXXXSPVGMNDRDDLGIDHSEEKVGGNSGGHMTXXXXXXXXXXXXXXXXXXXXXXXXXASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQ---QGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSL 364
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BLAST of NO19G01120 vs. NCBI_GenBank
Match: EWM22755.1 (poly -binding protein 4 isoform c [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 6.000e-16
Identity = 65/208 (31.25%), Postives = 102/208 (49.04%), Query Frame = 0 
Query:  100 LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLF--------------ENQXXXXXXXXXXXYYPQ-------------------------------------GIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMI 257
            LL+P SR+G  IGR G  I+ +   TG RI++   +   RD A+R + V+GS+  VC AV+L+A++ GLF               ++             P+                                     GIR+++ S  AG L+G+ G+TI+ IR+QS ARI +L+E+ESA EG +  ERV++++G  + CR AH ++
Sbjct:   97 LLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHKMGRTPVMDANSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLV 304
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_023217851.1 (poly(rC)-binding protein 3-like isoform X3 [Centruroides sculpturatus])

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-10
Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 
Query:   83 ASLANL-SLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMIC 258
            ASL NL S    +  T  L++    +G +IG+ GD IK  RE +G RI+IS  S  +     R VT++GS + +  A  LIAR+   FE               P  +R+++ +   G LIGK G+ I EIR  + A IQV SE           ER V + G A+A       IC
Sbjct:    2 ASLDNLPSDGPSVTLTIRLIMQGKEVGSIIGKKGDNIKKFREESGARINISDGSCPE-----RIVTITGSTEAILKAFSLIARK---FEEDLQNSIAGTNVPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPN-----STERAVTVSGTADAITKCIYQIC 164
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_023217853.1 (poly(rC)-binding protein 3-like isoform X5 [Centruroides sculpturatus])

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-10
Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 
Query:   83 ASLANL-SLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMIC 258
            ASL NL S    +  T  L++    +G +IG+ GD IK  RE +G RI+IS  S  +     R VT++GS + +  A  LIAR+   FE               P  +R+++ +   G LIGK G+ I EIR  + A IQV SE           ER V + G A+A       IC
Sbjct:    2 ASLDNLPSDGPSVTLTIRLIMQGKEVGSIIGKKGDNIKKFREESGARINISDGSCPE-----RIVTITGSTEAILKAFSLIARK---FEEDLQNSIAGTNVPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPN-----STERAVTVSGTADAITKCIYQIC 164
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_023217850.1 (poly(rC)-binding protein 3-like isoform X2 [Centruroides sculpturatus])

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-10
Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 
Query:   83 ASLANL-SLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMIC 258
            ASL NL S    +  T  L++    +G +IG+ GD IK  RE +G RI+IS  S  +     R VT++GS + +  A  LIAR+   FE               P  +R+++ +   G LIGK G+ I EIR  + A IQV SE           ER V + G A+A       IC
Sbjct:    2 ASLDNLPSDGPSVTLTIRLIMQGKEVGSIIGKKGDNIKKFREESGARINISDGSCPE-----RIVTITGSTEAILKAFSLIARK---FEEDLQNSIAGTNVPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPN-----STERAVTVSGTADAITKCIYQIC 164
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_023217846.1 (poly(rC)-binding protein 3-like isoform X1 [Centruroides sculpturatus] >XP_023217848.1 poly(rC)-binding protein 3-like isoform X1 [Centruroides sculpturatus] >XP_023217849.1 poly(rC)-binding protein 3-like isoform X1 [Centruroides sculpturatus])

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-10
Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 
Query:   83 ASLANL-SLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMIC 258
            ASL NL S    +  T  L++    +G +IG+ GD IK  RE +G RI+IS  S  +     R VT++GS + +  A  LIAR+   FE               P  +R+++ +   G LIGK G+ I EIR  + A IQV SE           ER V + G A+A       IC
Sbjct:    2 ASLDNLPSDGPSVTLTIRLIMQGKEVGSIIGKKGDNIKKFREESGARINISDGSCPE-----RIVTITGSTEAILKAFSLIARK---FEEDLQNSIAGTNVPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPN-----STERAVTVSGTADAITKCIYQIC 164
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_023217852.1 (poly(rC)-binding protein 3-like isoform X4 [Centruroides sculpturatus])

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-10
Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 
Query:   83 ASLANL-SLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMIC 258
            ASL NL S    +  T  L++    +G +IG+ GD IK  RE +G RI+IS  S  +     R VT++GS + +  A  LIAR+   FE               P  +R+++ +   G LIGK G+ I EIR  + A IQV SE           ER V + G A+A       IC
Sbjct:    2 ASLDNLPSDGPSVTLTIRLIMQGKEVGSIIGKKGDNIKKFREESGARINISDGSCPE-----RIVTITGSTEAILKAFSLIARK---FEEDLQNSIAGTNVPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPN-----STERAVTVSGTADAITKCIYQIC 164
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_023217854.1 (poly(rC)-binding protein 3-like isoform X6 [Centruroides sculpturatus])

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-10
Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 
Query:   83 ASLANL-SLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMIC 258
            ASL NL S    +  T  L++    +G +IG+ GD IK  RE +G RI+IS  S  +     R VT++GS + +  A  LIAR+   FE               P  +R+++ +   G LIGK G+ I EIR  + A IQV SE           ER V + G A+A       IC
Sbjct:    2 ASLDNLPSDGPSVTLTIRLIMQGKEVGSIIGKKGDNIKKFREESGARINISDGSCPE-----RIVTITGSTEAILKAFSLIARK---FEEDLQNSIAGTNVPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPN-----STERAVTVSGTADAITKCIYQIC 164
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: XP_022034114.1 (far upstream element-binding protein 2-like isoform X2 [Helianthus annuus] >OTG27705.1 putative KH domain-containing protein [Helianthus annuus])

HSP 1 Score: 74.3 bits (181), Expect = 8.400e-10
Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 0 
Query:  102 LPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQXXXXXXXXXXXYYPQGI----RMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMI 257
            +P++++G +IG+ GD I+ ++  +G RI I+  +E D + A RPV + GS++ +  A  LI       +              +  GI     M + +   G +IGK G TI  ++T+S ARIQ++   +   EG    ER V + GD +   +A  MI
Sbjct:  195 IPSNKVGVLIGKAGDTIRTLQHSSGARIQITRDAEADPNAATRPVQILGSIESINKAERLIKEVIAEADAGGSPSLVARGFSVHSSGIGEQYHMQVPNDKVGVIIGKGGETIKNLQTRSGARIQLI--PQHLPEGDQSKERSVRITGDRKQIEMARDMI 351
[Close]
BLAST of NO19G01120 vs. NCBI_GenBank
Match: OVA14551.1 (K Homology domain [Macleaya cordata])

HSP 1 Score: 74.3 bits (181), Expect = 8.400e-10
Identity = 52/172 (30.23%), Postives = 89/172 (51.74%), Query Frame = 0 
Query:   90 LSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELI-----ARQAGLFENQXXXXXXXXXXXYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMI 257
            LS G   T  + +P +++G +IG+ GD I+ ++  +G +I I+  +E DR  + RPV + GS++ +  A +LI        AG   +               + I++ + +   G +IGK G TI  ++T+S ARIQ++   +   EG L  ER V + GD +   +A +MI
Sbjct:  171 LSEGQTMTRKMEVPNNKVGVLIGKSGDTIRLLQYNSGAKIQITRDAEADRSSSTRPVELIGSLENINKAEKLIKDVIAEADAGGSPSLVARGFGTVQASGAAEQIQIQVPNEKVGLIIGKGGDTIKNLQTRSGARIQLI--PQHLPEGDLSKERTVRVTGDKKQIEIAREMI 340
The following BLAST results are available for this feature:
BLAST of NO19G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23629.17.200e-7874.62poly -binding protein 3 [Nannochloropsis gaditana][more]
EWM22755.16.000e-1631.25poly -binding protein 4 isoform c [Nannochloropsis... [more]
XP_023217851.16.400e-1034.66poly(rC)-binding protein 3-like isoform X3 [Centru... [more]
XP_023217853.16.400e-1034.66poly(rC)-binding protein 3-like isoform X5 [Centru... [more]
XP_023217850.16.400e-1034.66poly(rC)-binding protein 3-like isoform X2 [Centru... [more]
XP_023217846.16.400e-1034.66poly(rC)-binding protein 3-like isoform X1 [Centru... [more]
XP_023217852.16.400e-1034.66poly(rC)-binding protein 3-like isoform X4 [Centru... [more]
XP_023217854.16.400e-1034.66poly(rC)-binding protein 3-like isoform X6 [Centru... [more]
XP_022034114.18.400e-1030.19far upstream element-binding protein 2-like isofor... [more]
OVA14551.18.400e-1030.23K Homology domain [Macleaya cordata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004447NSK004447Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01120.1NO19G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599001gene_7507Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100137g3gene6839Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01120.1NO19G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01120 ID=NO19G01120|Name=NO19G01120|organism=Nannochloropsis oceanica|type=gene|length=1386bp
ATGCTGAACCCCACGGTCGGTGGCCCTACTTCTCCTTTGGACGACGCACA
CGCTTATCATCACCAGTATCACCAACAACAAGATAACGAAAACAGTGCAC
CGGTAGGgtaagtcttttgcttgatacagacagaagatagggttgagcgc
cctgcctccactccccaaaacctcccaatcccttctccctccacccccgt
gcatctgcttacgcacgcatagagagcacgtcaatgtcttcacatctttg
aaggatatcctccccttcctcatcaaagtcccacgtttcatacatctccc
tcccatccgtcagGATGAACGAACACGAAGATATCGGCACGGAGCATGGC
GACGACAAGCCCCAAACCACCACCACCACCACTTCCAGCGGGAGCAACCG
CCGTCGAAGCAGTGGCGCAGGGAGGAGTAGTACCGGCGGGCGTCGTTTGA
GTGCTTCACTGGCGAATCTGTCTCTGTCTTCGGGGTTGGAAGCGACGACA
TGCTTGTTGTTGCCCGCCTCGCGGATTGGGGGAGTGATAGGGCGGGGAGG
CGATGTTATTAAGGGCATTCGTGAATTGACGGGGACACGGATTCATATAA
GCTCCGCGTCAGAAGACGATCGTGATCCAGCTTTTCGCCCCGTGACTGTG
TCGGGGTCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTGATTGCCCGGCA
GGCGGGGCTGTTCGAGAACCAACAGCAGCAGCAGGGAGAGGGGGGGGAAG
AGGAGTACTATCCCCAGGGTATTCGGATGGTTATTGACAGCGGGAATGCC
GGGCAGCTGATTGGGAAAAAGGGGGCGACGATCAATGAGATCCGCACACA
GTCCCAGgtaggaagggagggagggagggagagatggatggagggaggga
gagagcaaggtgattttttttctcaatccttctttgcttgcttcctacct
ttctgtcggtccctagGCTCGTATCCAGGTGTTGTCCGAGGATGAGAGCG
CGGAGGAGGGAGCGCTGGGGATGGAGCGTGTGGTGATCCTCATGGGCGAT
GCCGAGGCTTGCCGCGTGGCCCATAAGATGATCTGCTCCTTGCTTGCGGC
GGCCTATGCCGCTGCCGCTGGTGGCGGTGGCGTGAACTCGCCCTCTGGTC
AGCAGCAGCAGCACGTGCAGCACGTGCAGCACGTGCAGCAGCACCACCAC
CATGCCCCCGTGGCCGTGGGTAACTCTTCGTCTTTCTTCAGCGGGGGCGA
CGCCACGCCCCTGTCGGACGCGGCATTCCGCCAGCACGACAACGCGCACG
CCTCTTCATCCTCGTTCTTGCACGGGACAGAACACGAGGCGGGGGGGAGG
GCGGTGGGGAGGATTACGACGACTCGTGCGAGGTGA
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protein sequence of NO19G01120.1

>NO19G01120.1-protein ID=NO19G01120.1-protein|Name=NO19G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MLNPTVGGPTSPLDDAHAYHHQYHQQQDNENSAPVGMNEHEDIGTEHGDD
KPQTTTTTTSSGSNRRRSSGAGRSSTGGRRLSASLANLSLSSGLEATTCL
LLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSG
SVQEVCSAVELIARQAGLFENQQQQQGEGGEEEYYPQGIRMVIDSGNAGQ
LIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACR
VAHKMICSLLAAAYAAAAGGGGVNSPSGQQQQHVQHVQHVQQHHHHAPVA
VGNSSSFFSGGDATPLSDAAFRQHDNAHASSSSFLHGTEHEAGGRAVGRI
TTTRAR*
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Synonyms
Publications