NO19G01120.1, NO19G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01120.1
Unique NameNO19G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1071
Alignment locationchr19:369762..371147 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:369762..371147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01120.1 vs.
Match: EWM23629.1 (poly -binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 378.3 bits (970), Expect = 2.700e-101
Identity = 231/353 (65.44%), Postives = 270/353 (76.49%), Query Frame = 0 
Query:    1 MLNPTVGGPTSPLDDAHAYH-HQYHQQQDNENSAPVGMNEHEDIGTEHGDDKPQTTT----TTTSSGSNRRRSSGAGRSSTGGRRLSASLANLSLSSGLEATTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSGSVQEVCSAVELIARQAGLFENQQQQQGEGGEEEYYPQGIRMVIDSGNAGQLIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACRVAHKMICSLLAAAYAAAAGGGGVNSPSGQQQQHVQHVQHVQQHHHHAPVAVGNSSSFFSGGDATPLSDAAFRQHDNAHASSSSFLHGTEHEAGGRAVG 349
            MLNPTVGGPTSPLDDAH +H HQY  Q +++N++PVGMN+ +D+G +H ++K    +    T+T  G++  R    GR S  GRRLSASLANLSLSSGLE TTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHIS A+EDDRDPAFR VTVSGSVQEVCSAVELI+RQAGLFE+  QQ GE G E+Y P G+R+VIDS +AGQ+IGKKGATINEIRTQSQARIQVLS++ESAEEGAL MERV++L+G+AEACR+AHKMICSLLA AYA+A+     NSPSG QQQ       VQQ     P A   S+SFFSGGDA         +H +A+++S   L G   E GG   G
Sbjct:  104 MLNPTVGGPTSPLDDAHYHHQHQYQHQGEDDNNSPVGMNDRDDLGIDHSEEKVGGNSGGHMTSTGGGNSGNRRRSGGRHSGSGRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFES--QQGGEDG-EDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYASASS----NSPSGHQQQ-----PSVQQASVAVPTA---STSFFSGGDAG-------YRHTDAYSAS---LGGLGAEGGGEGGG 431
The following BLAST results are available for this feature:
BLAST of NO19G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23629.12.700e-10165.44poly -binding protein 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01120NO19G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01120.1NO19G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01120.1.cds1NO19G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01120.1.cds2NO19G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01120.1.cds3NO19G01120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01120.1 ID=NO19G01120.1|Name=NO19G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
ATGCTGAACCCCACGGTCGGTGGCCCTACTTCTCCTTTGGACGACGCACA
CGCTTATCATCACCAGTATCACCAACAACAAGATAACGAAAACAGTGCAC
CGGTAGGGATGAACGAACACGAAGATATCGGCACGGAGCATGGCGACGAC
AAGCCCCAAACCACCACCACCACCACTTCCAGCGGGAGCAACCGCCGTCG
AAGCAGTGGCGCAGGGAGGAGTAGTACCGGCGGGCGTCGTTTGAGTGCTT
CACTGGCGAATCTGTCTCTGTCTTCGGGGTTGGAAGCGACGACATGCTTG
TTGTTGCCCGCCTCGCGGATTGGGGGAGTGATAGGGCGGGGAGGCGATGT
TATTAAGGGCATTCGTGAATTGACGGGGACACGGATTCATATAAGCTCCG
CGTCAGAAGACGATCGTGATCCAGCTTTTCGCCCCGTGACTGTGTCGGGG
TCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTGATTGCCCGGCAGGCGGG
GCTGTTCGAGAACCAACAGCAGCAGCAGGGAGAGGGGGGGGAAGAGGAGT
ACTATCCCCAGGGTATTCGGATGGTTATTGACAGCGGGAATGCCGGGCAG
CTGATTGGGAAAAAGGGGGCGACGATCAATGAGATCCGCACACAGTCCCA
GGCTCGTATCCAGGTGTTGTCCGAGGATGAGAGCGCGGAGGAGGGAGCGC
TGGGGATGGAGCGTGTGGTGATCCTCATGGGCGATGCCGAGGCTTGCCGC
GTGGCCCATAAGATGATCTGCTCCTTGCTTGCGGCGGCCTATGCCGCTGC
CGCTGGTGGCGGTGGCGTGAACTCGCCCTCTGGTCAGCAGCAGCAGCACG
TGCAGCACGTGCAGCACGTGCAGCAGCACCACCACCATGCCCCCGTGGCC
GTGGGTAACTCTTCGTCTTTCTTCAGCGGGGGCGACGCCACGCCCCTGTC
GGACGCGGCATTCCGCCAGCACGACAACGCGCACGCCTCTTCATCCTCGT
TCTTGCACGGGACAGAACACGAGGCGGGGGGGAGGGCGGTGGGGAGGATT
ACGACGACTCGTGCGAGGTGA
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protein sequence of NO19G01120.1

>NO19G01120.1-protein ID=NO19G01120.1-protein|Name=NO19G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MLNPTVGGPTSPLDDAHAYHHQYHQQQDNENSAPVGMNEHEDIGTEHGDD
KPQTTTTTTSSGSNRRRSSGAGRSSTGGRRLSASLANLSLSSGLEATTCL
LLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSG
SVQEVCSAVELIARQAGLFENQQQQQGEGGEEEYYPQGIRMVIDSGNAGQ
LIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACR
VAHKMICSLLAAAYAAAAGGGGVNSPSGQQQQHVQHVQHVQQHHHHAPVA
VGNSSSFFSGGDATPLSDAAFRQHDNAHASSSSFLHGTEHEAGGRAVGRI
TTTRAR*
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mRNA from alignment at chr19:369762..371147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01120.1 ID=NO19G01120.1|Name=NO19G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr19:369762..371147- (Nannochloropsis oceanica)
ATGCTGAACCCCACGGTCGGTGGCCCTACTTCTCCTTTGGACGACGCACA
CGCTTATCATCACCAGTATCACCAACAACAAGATAACGAAAACAGTGCAC
CGGTAGGGTAAGTCTTTTGCTTGATACAGACAGAAGATAGGGTTGAGCGC
CCTGCCTCCACTCCCCAAAACCTCCCAATCCCTTCTCCCTCCACCCCCGT
GCATCTGCTTACGCACGCATAGAGAGCACGTCAATGTCTTCACATCTTTG
AAGGATATCCTCCCCTTCCTCATCAAAGTCCCACGTTTCATACATCTCCC
TCCCATCCGTCAGGATGAACGAACACGAAGATATCGGCACGGAGCATGGC
GACGACAAGCCCCAAACCACCACCACCACCACTTCCAGCGGGAGCAACCG
CCGTCGAAGCAGTGGCGCAGGGAGGAGTAGTACCGGCGGGCGTCGTTTGA
GTGCTTCACTGGCGAATCTGTCTCTGTCTTCGGGGTTGGAAGCGACGACA
TGCTTGTTGTTGCCCGCCTCGCGGATTGGGGGAGTGATAGGGCGGGGAGG
CGATGTTATTAAGGGCATTCGTGAATTGACGGGGACACGGATTCATATAA
GCTCCGCGTCAGAAGACGATCGTGATCCAGCTTTTCGCCCCGTGACTGTG
TCGGGGTCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTGATTGCCCGGCA
GGCGGGGCTGTTCGAGAACCAACAGCAGCAGCAGGGAGAGGGGGGGGAAG
AGGAGTACTATCCCCAGGGTATTCGGATGGTTATTGACAGCGGGAATGCC
GGGCAGCTGATTGGGAAAAAGGGGGCGACGATCAATGAGATCCGCACACA
GTCCCAGGTAGGAAGGGAGGGAGGGAGGGAGAGATGGATGGAGGGAGGGA
GAGAGCAAGGTGATTTTTTTTCTCAATCCTTCTTTGCTTGCTTCCTACCT
TTCTGTCGGTCCCTAGGCTCGTATCCAGGTGTTGTCCGAGGATGAGAGCG
CGGAGGAGGGAGCGCTGGGGATGGAGCGTGTGGTGATCCTCATGGGCGAT
GCCGAGGCTTGCCGCGTGGCCCATAAGATGATCTGCTCCTTGCTTGCGGC
GGCCTATGCCGCTGCCGCTGGTGGCGGTGGCGTGAACTCGCCCTCTGGTC
AGCAGCAGCAGCACGTGCAGCACGTGCAGCACGTGCAGCAGCACCACCAC
CATGCCCCCGTGGCCGTGGGTAACTCTTCGTCTTTCTTCAGCGGGGGCGA
CGCCACGCCCCTGTCGGACGCGGCATTCCGCCAGCACGACAACGCGCACG
CCTCTTCATCCTCGTTCTTGCACGGGACAGAACACGAGGCGGGGGGGAGG
GCGGTGGGGAGGATTACGACGACTCGTGCGAGGTGA
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Coding sequence (CDS) from alignment at chr19:369762..371147-

>NO19G01120.1 ID=NO19G01120.1|Name=NO19G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr19:369762..371147- (Nannochloropsis oceanica)
ATGCTGAACCCCACGGTCGGTGGCCCTACTTCTCCTTTGGACGACGCACA
CGCTTATCATCACCAGTATCACCAACAACAAGATAACGAAAACAGTGCAC
CGGTAGGGATGAACGAACACGAAGATATCGGCACGGAGCATGGCGACGAC
AAGCCCCAAACCACCACCACCACCACTTCCAGCGGGAGCAACCGCCGTCG
AAGCAGTGGCGCAGGGAGGAGTAGTACCGGCGGGCGTCGTTTGAGTGCTT
CACTGGCGAATCTGTCTCTGTCTTCGGGGTTGGAAGCGACGACATGCTTG
TTGTTGCCCGCCTCGCGGATTGGGGGAGTGATAGGGCGGGGAGGCGATGT
TATTAAGGGCATTCGTGAATTGACGGGGACACGGATTCATATAAGCTCCG
CGTCAGAAGACGATCGTGATCCAGCTTTTCGCCCCGTGACTGTGTCGGGG
TCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTGATTGCCCGGCAGGCGGG
GCTGTTCGAGAACCAACAGCAGCAGCAGGGAGAGGGGGGGGAAGAGGAGT
ACTATCCCCAGGGTATTCGGATGGTTATTGACAGCGGGAATGCCGGGCAG
CTGATTGGGAAAAAGGGGGCGACGATCAATGAGATCCGCACACAGTCCCA
GGCTCGTATCCAGGTGTTGTCCGAGGATGAGAGCGCGGAGGAGGGAGCGC
TGGGGATGGAGCGTGTGGTGATCCTCATGGGCGATGCCGAGGCTTGCCGC
GTGGCCCATAAGATGATCTGCTCCTTGCTTGCGGCGGCCTATGCCGCTGC
CGCTGGTGGCGGTGGCGTGAACTCGCCCTCTGGTCAGCAGCAGCAGCACG
TGCAGCACGTGCAGCACGTGCAGCAGCACCACCACCATGCCCCCGTGGCC
GTGGGTAACTCTTCGTCTTTCTTCAGCGGGGGCGACGCCACGCCCCTGTC
GGACGCGGCATTCCGCCAGCACGACAACGCGCACGCCTCTTCATCCTCGT
TCTTGCACGGGACAGAACACGAGGCGGGGGGGAGGGCGGTGGGGAGGATT
ACGACGACTCGTGCGAGGTGA
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Synonyms
Publications