NO19G01100, NO19G01100 (gene) Nannochloropsis oceanica

Overview
NameNO19G01100
Unique NameNO19G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2346
Alignment locationchr19:362467..364812 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:362467..364812 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G01100 vs. NCBI_GenBank
Match: EWM23612.1 (hypothetical protein Naga_101086g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 128.3 bits (321), Expect = 1.100e-25
Identity = 85/203 (41.87%), Postives = 115/203 (56.65%), Query Frame = 0 
Query:  491 LLTLDRYIQADCPSSLRTCISALLNSPSLPPSLWPSPTLPALIAGLVKEED---------VRLGVASLLHISRCISLSTERGKDLVTALLRTILEDRLL----PPXXXXXXXXXXXXXXXXXXLQSLPTGTEEERQAYFLFLLEKIEEGELAGDFLAPTSSSLPPSSNGKAKVGGREKRRGTGERTLFFAIFIALWVQMSLTS 681
            L +LDRY+QAD PSSLR  I++LL+  S PPSLWPSP LPAL+ GL   E            LG+ +L+HI+RCI ++ E G++L++ALLR +LE R+L     P                  L SL  G   +R+ Y L LL  +++   A  F A +    PPSS  +    GRE+R  +G R L  A+ +ALWVQ+SLTS
Sbjct:    1 LFSLDRYLQADGPSSLRAAIASLLS--SFPPSLWPSPVLPALLHGLTGAEGRHQEAKNGVGHLGIPALVHIARCIPMALEPGRELLSALLRHLLEQRILALPSSPSASASLPPASSPSPLLASLSSLHIGEGGDRRTYLLRLLRLLDDPSFAPPFFAIS----PPSSAHQ----GREERGNSGARILQLALALALWVQLSLTS 193
The following BLAST results are available for this feature:
BLAST of NO19G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23612.11.100e-2541.87hypothetical protein Naga_101086g3, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01100.1NO19G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641186gene_7504Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101086g3gene6842Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01100.1NO19G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01100 ID=NO19G01100|Name=NO19G01100|organism=Nannochloropsis oceanica|type=gene|length=2346bp
ATGACCAATATGAGCCTCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTT
TATGGCCCCTCTTGCAGCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCA
GCTACGTGCCTCTCTCCCTTTCCTCCATCGATGCCACCAAGAAGGACACG
TTTTCTCTGAGTAATTTGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTT
GGAGCATCTAAGGGGTGACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGA
CGAGGGTGTCTTCAGTGTCGTCGTTTGACAGGATCGTGAAGACGGAGGAG
ATGTTGTTGAGTATGAGTAGTAGTAGTGAGAGTGAGGGAGAGATGGAGGA
GGAGGAAGATAGGCAAGATAAGGGAAAAGAAAGGGAAAAGCAGGGAAAGA
AAAAAACGAAGAATGGGTTTGGTAACTTCGTCTATAGGAATGGCGGGGAA
AGAGGGGAGGAGGACAAGGAGTCAGACCTGGACATGGAGAGGGAGGAATT
TGTGGAGTGGTTGGGTCTTACAAGCGTCTTCACCATGCGTCAGGAAGATG
ATGGGGAGGAGGGGGAATGGGGAGGCATGGTGGTGCCTTCCCCTCTTCTT
CCTTCGAGCGGCAGAGGGAGAGGGGGAGGGGATGGCAACGCACGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATCAGCAACAGCAGCAGCA
ACAATAAGAACGCGAATGTTCTCGAGCAGTACGGGAAACTGGCCGAAGCT
CTGGAAGATGCAGAGCACCAAGGGACCCTCCCCGACCTCCTTTCCCTTCT
TGCTCCTTCACGCTGGCTTGCCTCGCAGCAGCTTCCCCCTCCCTCCCTCC
TCATCACCAACCTTTGGAAGGTGATGACGTGGCACGCTGACCCTGTCTTG
GCACATGCTTCATATTTGAATTTAAGGAAGTTGATGCCGATGAAGGGGAG
GGAGGGAGGGAAGGAGGGAGGGTGGAGATTGGAAGGAGCGTTGATCCAGG
AACTCTTCAGGGGATTCGGGGTTTTTGTGGGAGGAAAGGAAGCGGAGGAG
GGCGAGGAAGAGGGAGGGAAGGAGGACGGGGGAGGAGGTGGGTGCGATGT
GACCTCCCCTTTGTTGGTTTCGTCTTCGTCCTCGCTCCCTTCCTCGTCCT
CGTCCTCCTGGGGCTACCCCCACCCTGTGTTGAGGCGCGCGATAGACACA
ACCCACTTAGACCACGCCGTTGATCACGACGAGGACGATGAAGAGGAGGA
AGGCGGGAAGGAGGACAAGGTTCCACCACCTCCGGCACTGGACAAGAGCA
GCATTCCGCCCACCGGCAACCTCCGAGACCTTTTTATCTCCCTCTCCTCC
TGCTTCTTCTCCTCCTCCTCCTCCTGCTTCTCCTCCTCCTCCTCCTGCTT
CTCTCCCTCCTCCTCCTCCCCTCTCTCCCTTTCCCCCTCTTTCACCACCT
CCCTCCTCCACACCCTCCTCCTCCTCACTCTTGACCGATACATCCAAGCA
GACTGCCCCTCCTCCCTCCGCACCTGCATCTCCGCCCTCCTCAACTCGCC
CTCTCTCCCCCCTTCCCTTTGGCCCTCGCCCACCCTCCCTGCCCTAATTG
CCGGCTTGGTGAAGGAGGAGGATGTGAGGCTTGGTGTCGCGTCTTTGCTC
CACATCTCTCGGTGCATCTCTCTGTCCACCGAGAGGGGGAAGGACCTCGT
CACCGCCCTGCTCCGGACCATCCTAGAGGACAGGCTCCTCCCCCCCTCCC
TCCCCCCCTCCCTCCCTTCCCCTCCCTCCCTCCCTTCTGCCCTCGTCCTC
CTCCAGTCCCTCCCAACTGGAACAGAGGAAGAGCGTCAAGCATATTTCCT
CTTTCTGCTCGAAAAAATTGAAGAGGGAGAGCTCGCTGGTGATTTCCTTG
CTCCCACCTCGTCATCCCTCCCTCCCTCATCGAACGGAAAAGCAAAGGTA
GGAGGGAGAGAGAAAAGGAGGGGTACCGGTGAGCGCACGCTGTTCTTCGC
CATCTTTATTGCCTTGTGGGTGCAAATGAGCTTGACAAGCCTCCCCCGGC
CGTCGAGGAAGGGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTAT
GCGGGGGAGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAG
GGGAATGAATGATGAGAGGATACAGACAGCGAAGGATTTGATGGCCCAAA
CGCTGGTTGCGGTGAAGGCATGGAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGACGCAGATGACTTTGAAGGGAATGTTTGGAGGAGGAGGAGGAGGAGG
TGGTGGTGGTGGAGGAGGAGGAGAGGGGAATGGGAAGGAAGGATGA
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protein sequence of NO19G01100.1

>NO19G01100.1-protein ID=NO19G01100.1-protein|Name=NO19G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MTNMSLEEEEEDLLADFMAPLAASAKRKTSTSSSYVPLSLSSIDATKKDT
FSLSNLIKEQEKEKRALEHLRGDGGGEEEGGGGTRVSSVSSFDRIVKTEE
MLLSMSSSSESEGEMEEEEDRQDKGKEREKQGKKKTKNGFGNFVYRNGGE
RGEEDKESDLDMEREEFVEWLGLTSVFTMRQEDDGEEGEWGGMVVPSPLL
PSSGRGRGGGDGNARSSSSSSSSSSNSISNSSSNNKNANVLEQYGKLAEA
LEDAEHQGTLPDLLSLLAPSRWLASQQLPPPSLLITNLWKVMTWHADPVL
AHASYLNLRKLMPMKGREGGKEGGWRLEGALIQELFRGFGVFVGGKEAEE
GEEEGGKEDGGGGGCDVTSPLLVSSSSSLPSSSSSSWGYPHPVLRRAIDT
THLDHAVDHDEDDEEEEGGKEDKVPPPPALDKSSIPPTGNLRDLFISLSS
CFFSSSSSCFSSSSSCFSPSSSSPLSLSPSFTTSLLHTLLLLTLDRYIQA
DCPSSLRTCISALLNSPSLPPSLWPSPTLPALIAGLVKEEDVRLGVASLL
HISRCISLSTERGKDLVTALLRTILEDRLLPPSLPPSLPSPPSLPSALVL
LQSLPTGTEEERQAYFLFLLEKIEEGELAGDFLAPTSSSLPPSSNGKAKV
GGREKRRGTGERTLFFAIFIALWVQMSLTSLPRPSRKGGKEGRKGQREGY
AGEVARRVMGLDRTRIRGMNDERIQTAKDLMAQTLVAVKAWRGREGGREG
GTQMTLKGMFGGGGGGGGGGGGGGEGNGKEG*
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Synonyms
Publications