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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:362467..364812 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01100.1 vs.
Match: EWM23612.1 (hypothetical protein Naga_101086g3, partial [Nannochloropsis gaditana]) HSP 1 Score: 142.9 bits (359), Expect = 4.200e-30 Identity = 133/316 (42.09%), Postives = 174/316 (55.06%), Query Frame = 0
Query: 491 LLTLDRYIQADCPSSLRTCISALLNSPSLPPSLWPSPTLPALIAGLVKEEDVR---------LGVASLLHISRCISLSTERGKDLVTALLRTILEDRLL----PPSLPPSLPSPPSLPSALVL-LQSLPTGTEEERQAYFLFLLEKIEEGELAGDFLAPTSSSLPPSSNGKAKVGGREKRRGTGERTLFFAIFIALWVQMSLTSLPRPSRKGGKEGRKGQRE-----GYAGEV----ARRVMGLDRTRIRGMNDERIQTAKDLMAQTLVAVKAWRGREGGREGGTQMTLKGMFGGGGGGG---GGGGGGGEGNGKE 781
L +LDRY+QAD PSSLR I++LL+S PPSLWPSP LPAL+ GL E LG+ +L+HI+RCI ++ E G++L++ALLR +LE R+L PS SLP P S PS L+ L SL G +R+ Y L LL +++ A F A + PPSS + GRE+R +G R L A+ +ALWVQ+SLTS P P R GG GR G RE G GE AR G +R R +D + + D + + RGREGGR+ ++G G GGGG GG G G G+ E
Sbjct: 1 LFSLDRYLQADGPSSLRAAIASLLSS--FPPSLWPSPVLPALLHGLTGAEGRHQEAKNGVGHLGIPALVHIARCIPMALEPGRELLSALLRHLLEQRILALPSSPSASASLP-PASSPSPLLASLSSLHIGEGGDRRTYLLRLLRLLDDPSFAPPFFAIS----PPSSAHQ----GREERGNSGARILQLALALALWVQLSLTSRP-PPRGGGGAGRAGSREEGVRRGGGGETEEPGAREAAGHER---REASDGQRRADADCGGASGLEGGRGRGREGGRDADEPAWVRGAARGRGGGGKRVGGVGKRGLGSDAE 301
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01100.1 ID=NO19G01100.1|Name=NO19G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp
ATGACCAATATGAGCCTCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTT
TATGGCCCCTCTTGCAGCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCA
GCTACGTGCCTCTCTCCCTTTCCTCCATCGATGCCACCAAGAAGGACACG
TTTTCTCTGAGTAATTTGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTT
GGAGCATCTAAGGGGTGACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGA
CGAGGGTGTCTTCAGTGTCGTCGTTTGACAGGATCGTGAAGACGGAGGAG
ATGTTGTTGAGTATGAGTAGTAGTAGTGAGAGTGAGGGAGAGATGGAGGA
GGAGGAAGATAGGCAAGATAAGGGAAAAGAAAGGGAAAAGCAGGGAAAGA
AAAAAACGAAGAATGGGTTTGGTAACTTCGTCTATAGGAATGGCGGGGAA
AGAGGGGAGGAGGACAAGGAGTCAGACCTGGACATGGAGAGGGAGGAATT
TGTGGAGTGGTTGGGTCTTACAAGCGTCTTCACCATGCGTCAGGAAGATG
ATGGGGAGGAGGGGGAATGGGGAGGCATGGTGGTGCCTTCCCCTCTTCTT
CCTTCGAGCGGCAGAGGGAGAGGGGGAGGGGATGGCAACGCACGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATCAGCAACAGCAGCAGCA
ACAATAAGAACGCGAATGTTCTCGAGCAGTACGGGAAACTGGCCGAAGCT
CTGGAAGATGCAGAGCACCAAGGGACCCTCCCCGACCTCCTTTCCCTTCT
TGCTCCTTCACGCTGGCTTGCCTCGCAGCAGCTTCCCCCTCCCTCCCTCC
TCATCACCAACCTTTGGAAGGTGATGACGTGGCACGCTGACCCTGTCTTG
GCACATGCTTCATATTTGAATTTAAGGAAGTTGATGCCGATGAAGGGGAG
GGAGGGAGGGAAGGAGGGAGGGTGGAGATTGGAAGGAGCGTTGATCCAGG
AACTCTTCAGGGGATTCGGGGTTTTTGTGGGAGGAAAGGAAGCGGAGGAG
GGCGAGGAAGAGGGAGGGAAGGAGGACGGGGGAGGAGGTGGGTGCGATGT
GACCTCCCCTTTGTTGGTTTCGTCTTCGTCCTCGCTCCCTTCCTCGTCCT
CGTCCTCCTGGGGCTACCCCCACCCTGTGTTGAGGCGCGCGATAGACACA
ACCCACTTAGACCACGCCGTTGATCACGACGAGGACGATGAAGAGGAGGA
AGGCGGGAAGGAGGACAAGGTTCCACCACCTCCGGCACTGGACAAGAGCA
GCATTCCGCCCACCGGCAACCTCCGAGACCTTTTTATCTCCCTCTCCTCC
TGCTTCTTCTCCTCCTCCTCCTCCTGCTTCTCCTCCTCCTCCTCCTGCTT
CTCTCCCTCCTCCTCCTCCCCTCTCTCCCTTTCCCCCTCTTTCACCACCT
CCCTCCTCCACACCCTCCTCCTCCTCACTCTTGACCGATACATCCAAGCA
GACTGCCCCTCCTCCCTCCGCACCTGCATCTCCGCCCTCCTCAACTCGCC
CTCTCTCCCCCCTTCCCTTTGGCCCTCGCCCACCCTCCCTGCCCTAATTG
CCGGCTTGGTGAAGGAGGAGGATGTGAGGCTTGGTGTCGCGTCTTTGCTC
CACATCTCTCGGTGCATCTCTCTGTCCACCGAGAGGGGGAAGGACCTCGT
CACCGCCCTGCTCCGGACCATCCTAGAGGACAGGCTCCTCCCCCCCTCCC
TCCCCCCCTCCCTCCCTTCCCCTCCCTCCCTCCCTTCTGCCCTCGTCCTC
CTCCAGTCCCTCCCAACTGGAACAGAGGAAGAGCGTCAAGCATATTTCCT
CTTTCTGCTCGAAAAAATTGAAGAGGGAGAGCTCGCTGGTGATTTCCTTG
CTCCCACCTCGTCATCCCTCCCTCCCTCATCGAACGGAAAAGCAAAGGTA
GGAGGGAGAGAGAAAAGGAGGGGTACCGGTGAGCGCACGCTGTTCTTCGC
CATCTTTATTGCCTTGTGGGTGCAAATGAGCTTGACAAGCCTCCCCCGGC
CGTCGAGGAAGGGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTAT
GCGGGGGAGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAG
GGGAATGAATGATGAGAGGATACAGACAGCGAAGGATTTGATGGCCCAAA
CGCTGGTTGCGGTGAAGGCATGGAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGACGCAGATGACTTTGAAGGGAATGTTTGGAGGAGGAGGAGGAGGAGG
TGGTGGTGGTGGAGGAGGAGGAGAGGGGAATGGGAAGGAAGGATGA back to topprotein sequence of NO19G01100.1 >NO19G01100.1-protein ID=NO19G01100.1-protein|Name=NO19G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MTNMSLEEEEEDLLADFMAPLAASAKRKTSTSSSYVPLSLSSIDATKKDT
FSLSNLIKEQEKEKRALEHLRGDGGGEEEGGGGTRVSSVSSFDRIVKTEE
MLLSMSSSSESEGEMEEEEDRQDKGKEREKQGKKKTKNGFGNFVYRNGGE
RGEEDKESDLDMEREEFVEWLGLTSVFTMRQEDDGEEGEWGGMVVPSPLL
PSSGRGRGGGDGNARSSSSSSSSSSNSISNSSSNNKNANVLEQYGKLAEA
LEDAEHQGTLPDLLSLLAPSRWLASQQLPPPSLLITNLWKVMTWHADPVL
AHASYLNLRKLMPMKGREGGKEGGWRLEGALIQELFRGFGVFVGGKEAEE
GEEEGGKEDGGGGGCDVTSPLLVSSSSSLPSSSSSSWGYPHPVLRRAIDT
THLDHAVDHDEDDEEEEGGKEDKVPPPPALDKSSIPPTGNLRDLFISLSS
CFFSSSSSCFSSSSSCFSPSSSSPLSLSPSFTTSLLHTLLLLTLDRYIQA
DCPSSLRTCISALLNSPSLPPSLWPSPTLPALIAGLVKEEDVRLGVASLL
HISRCISLSTERGKDLVTALLRTILEDRLLPPSLPPSLPSPPSLPSALVL
LQSLPTGTEEERQAYFLFLLEKIEEGELAGDFLAPTSSSLPPSSNGKAKV
GGREKRRGTGERTLFFAIFIALWVQMSLTSLPRPSRKGGKEGRKGQREGY
AGEVARRVMGLDRTRIRGMNDERIQTAKDLMAQTLVAVKAWRGREGGREG
GTQMTLKGMFGGGGGGGGGGGGGGEGNGKEG* back to topmRNA from alignment at chr19:362467..364812- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01100.1 ID=NO19G01100.1|Name=NO19G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp|location=Sequence derived from alignment at chr19:362467..364812- (Nannochloropsis oceanica)
ATGACCAATATGAGCCTCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTT
TATGGCCCCTCTTGCAGCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCA
GCTACGTGCCTCTCTCCCTTTCCTCCATCGATGCCACCAAGAAGGACACG
TTTTCTCTGAGTAATTTGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTT
GGAGCATCTAAGGGGTGACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGA
CGAGGGTGTCTTCAGTGTCGTCGTTTGACAGGATCGTGAAGACGGAGGAG
ATGTTGTTGAGTATGAGTAGTAGTAGTGAGAGTGAGGGAGAGATGGAGGA
GGAGGAAGATAGGCAAGATAAGGGAAAAGAAAGGGAAAAGCAGGGAAAGA
AAAAAACGAAGAATGGGTTTGGTAACTTCGTCTATAGGAATGGCGGGGAA
AGAGGGGAGGAGGACAAGGAGTCAGACCTGGACATGGAGAGGGAGGAATT
TGTGGAGTGGTTGGGTCTTACAAGCGTCTTCACCATGCGTCAGGAAGATG
ATGGGGAGGAGGGGGAATGGGGAGGCATGGTGGTGCCTTCCCCTCTTCTT
CCTTCGAGCGGCAGAGGGAGAGGGGGAGGGGATGGCAACGCACGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATCAGCAACAGCAGCAGCA
ACAATAAGAACGCGAATGTTCTCGAGCAGTACGGGAAACTGGCCGAAGCT
CTGGAAGATGCAGAGCACCAAGGGACCCTCCCCGACCTCCTTTCCCTTCT
TGCTCCTTCACGCTGGCTTGCCTCGCAGCAGCTTCCCCCTCCCTCCCTCC
TCATCACCAACCTTTGGAAGGTGATGACGTGGCACGCTGACCCTGTCTTG
GCACATGCTTCATATTTGAATTTAAGGAAGTTGATGCCGATGAAGGGGAG
GGAGGGAGGGAAGGAGGGAGGGTGGAGATTGGAAGGAGCGTTGATCCAGG
AACTCTTCAGGGGATTCGGGGTTTTTGTGGGAGGAAAGGAAGCGGAGGAG
GGCGAGGAAGAGGGAGGGAAGGAGGACGGGGGAGGAGGTGGGTGCGATGT
GACCTCCCCTTTGTTGGTTTCGTCTTCGTCCTCGCTCCCTTCCTCGTCCT
CGTCCTCCTGGGGCTACCCCCACCCTGTGTTGAGGCGCGCGATAGACACA
ACCCACTTAGACCACGCCGTTGATCACGACGAGGACGATGAAGAGGAGGA
AGGCGGGAAGGAGGACAAGGTTCCACCACCTCCGGCACTGGACAAGAGCA
GCATTCCGCCCACCGGCAACCTCCGAGACCTTTTTATCTCCCTCTCCTCC
TGCTTCTTCTCCTCCTCCTCCTCCTGCTTCTCCTCCTCCTCCTCCTGCTT
CTCTCCCTCCTCCTCCTCCCCTCTCTCCCTTTCCCCCTCTTTCACCACCT
CCCTCCTCCACACCCTCCTCCTCCTCACTCTTGACCGATACATCCAAGCA
GACTGCCCCTCCTCCCTCCGCACCTGCATCTCCGCCCTCCTCAACTCGCC
CTCTCTCCCCCCTTCCCTTTGGCCCTCGCCCACCCTCCCTGCCCTAATTG
CCGGCTTGGTGAAGGAGGAGGATGTGAGGCTTGGTGTCGCGTCTTTGCTC
CACATCTCTCGGTGCATCTCTCTGTCCACCGAGAGGGGGAAGGACCTCGT
CACCGCCCTGCTCCGGACCATCCTAGAGGACAGGCTCCTCCCCCCCTCCC
TCCCCCCCTCCCTCCCTTCCCCTCCCTCCCTCCCTTCTGCCCTCGTCCTC
CTCCAGTCCCTCCCAACTGGAACAGAGGAAGAGCGTCAAGCATATTTCCT
CTTTCTGCTCGAAAAAATTGAAGAGGGAGAGCTCGCTGGTGATTTCCTTG
CTCCCACCTCGTCATCCCTCCCTCCCTCATCGAACGGAAAAGCAAAGGTA
GGAGGGAGAGAGAAAAGGAGGGGTACCGGTGAGCGCACGCTGTTCTTCGC
CATCTTTATTGCCTTGTGGGTGCAAATGAGCTTGACAAGCCTCCCCCGGC
CGTCGAGGAAGGGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTAT
GCGGGGGAGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAG
GGGAATGAATGATGAGAGGATACAGACAGCGAAGGATTTGATGGCCCAAA
CGCTGGTTGCGGTGAAGGCATGGAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGACGCAGATGACTTTGAAGGGAATGTTTGGAGGAGGAGGAGGAGGAGG
TGGTGGTGGTGGAGGAGGAGGAGAGGGGAATGGGAAGGAAGGATGA back to topCoding sequence (CDS) from alignment at chr19:362467..364812- >NO19G01100.1 ID=NO19G01100.1|Name=NO19G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at chr19:362467..364812- (Nannochloropsis oceanica)
ATGACCAATATGAGCCTCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTT
TATGGCCCCTCTTGCAGCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCA
GCTACGTGCCTCTCTCCCTTTCCTCCATCGATGCCACCAAGAAGGACACG
TTTTCTCTGAGTAATTTGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTT
GGAGCATCTAAGGGGTGACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGA
CGAGGGTGTCTTCAGTGTCGTCGTTTGACAGGATCGTGAAGACGGAGGAG
ATGTTGTTGAGTATGAGTAGTAGTAGTGAGAGTGAGGGAGAGATGGAGGA
GGAGGAAGATAGGCAAGATAAGGGAAAAGAAAGGGAAAAGCAGGGAAAGA
AAAAAACGAAGAATGGGTTTGGTAACTTCGTCTATAGGAATGGCGGGGAA
AGAGGGGAGGAGGACAAGGAGTCAGACCTGGACATGGAGAGGGAGGAATT
TGTGGAGTGGTTGGGTCTTACAAGCGTCTTCACCATGCGTCAGGAAGATG
ATGGGGAGGAGGGGGAATGGGGAGGCATGGTGGTGCCTTCCCCTCTTCTT
CCTTCGAGCGGCAGAGGGAGAGGGGGAGGGGATGGCAACGCACGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATCAGCAACAGCAGCAGCA
ACAATAAGAACGCGAATGTTCTCGAGCAGTACGGGAAACTGGCCGAAGCT
CTGGAAGATGCAGAGCACCAAGGGACCCTCCCCGACCTCCTTTCCCTTCT
TGCTCCTTCACGCTGGCTTGCCTCGCAGCAGCTTCCCCCTCCCTCCCTCC
TCATCACCAACCTTTGGAAGGTGATGACGTGGCACGCTGACCCTGTCTTG
GCACATGCTTCATATTTGAATTTAAGGAAGTTGATGCCGATGAAGGGGAG
GGAGGGAGGGAAGGAGGGAGGGTGGAGATTGGAAGGAGCGTTGATCCAGG
AACTCTTCAGGGGATTCGGGGTTTTTGTGGGAGGAAAGGAAGCGGAGGAG
GGCGAGGAAGAGGGAGGGAAGGAGGACGGGGGAGGAGGTGGGTGCGATGT
GACCTCCCCTTTGTTGGTTTCGTCTTCGTCCTCGCTCCCTTCCTCGTCCT
CGTCCTCCTGGGGCTACCCCCACCCTGTGTTGAGGCGCGCGATAGACACA
ACCCACTTAGACCACGCCGTTGATCACGACGAGGACGATGAAGAGGAGGA
AGGCGGGAAGGAGGACAAGGTTCCACCACCTCCGGCACTGGACAAGAGCA
GCATTCCGCCCACCGGCAACCTCCGAGACCTTTTTATCTCCCTCTCCTCC
TGCTTCTTCTCCTCCTCCTCCTCCTGCTTCTCCTCCTCCTCCTCCTGCTT
CTCTCCCTCCTCCTCCTCCCCTCTCTCCCTTTCCCCCTCTTTCACCACCT
CCCTCCTCCACACCCTCCTCCTCCTCACTCTTGACCGATACATCCAAGCA
GACTGCCCCTCCTCCCTCCGCACCTGCATCTCCGCCCTCCTCAACTCGCC
CTCTCTCCCCCCTTCCCTTTGGCCCTCGCCCACCCTCCCTGCCCTAATTG
CCGGCTTGGTGAAGGAGGAGGATGTGAGGCTTGGTGTCGCGTCTTTGCTC
CACATCTCTCGGTGCATCTCTCTGTCCACCGAGAGGGGGAAGGACCTCGT
CACCGCCCTGCTCCGGACCATCCTAGAGGACAGGCTCCTCCCCCCCTCCC
TCCCCCCCTCCCTCCCTTCCCCTCCCTCCCTCCCTTCTGCCCTCGTCCTC
CTCCAGTCCCTCCCAACTGGAACAGAGGAAGAGCGTCAAGCATATTTCCT
CTTTCTGCTCGAAAAAATTGAAGAGGGAGAGCTCGCTGGTGATTTCCTTG
CTCCCACCTCGTCATCCCTCCCTCCCTCATCGAACGGAAAAGCAAAGGTA
GGAGGGAGAGAGAAAAGGAGGGGTACCGGTGAGCGCACGCTGTTCTTCGC
CATCTTTATTGCCTTGTGGGTGCAAATGAGCTTGACAAGCCTCCCCCGGC
CGTCGAGGAAGGGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTAT
GCGGGGGAGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAG
GGGAATGAATGATGAGAGGATACAGACAGCGAAGGATTTGATGGCCCAAA
CGCTGGTTGCGGTGAAGGCATGGAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGACGCAGATGACTTTGAAGGGAATGTTTGGAGGAGGAGGAGGAGGAGG
TGGTGGTGGTGGAGGAGGAGGAGAGGGGAATGGGAAGGAAGGATGA back to top
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