NO19G00980, NO19G00980 (gene) Nannochloropsis oceanica

Overview
NameNO19G00980
Unique NameNO19G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2488
Alignment locationchr19:327721..330208 +

Link to JBrowse

Properties
Property NameValue
DescriptionProteinase inhibitor I25, cystatin
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:327721..330208 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010951negative regulation of endopeptidase activity
Vocabulary: Molecular Function
TermDefinition
GO:0004869cysteine-type endopeptidase inhibitor activity
Homology
[Close]
BLAST of NO19G00980 vs. NCBI_GenBank
Match: EWM23596.1 (Proteinase inhibitor I25, cystatin [Nannochloropsis gaditana])

HSP 1 Score: 256.9 bits (655), Expect = 8.000e-65
Identity = 147/301 (48.84%), Postives = 189/301 (62.79%), Query Frame = 0 
Query:   17 FLVSNLLLLYTRPTSGMNALVCPEGMQGPLNQPEGADCGGPCGQFGSCAPGLVCRPISDLAKEQVE----EEGEEGMEKGVGSPMLSSKLADLVHHSLGRAPRGVCVPEDSMKASDETFG----NDIMRRSGARKAAEATRELGERVAIMGEDDLLRPEGSLHASQ-QPQQLPEGRNALPAAAEASGGKVPRQGNCPGCPQNVDVSDPEVVAAAKAGVKLMKARGDLGSAEESNNLNLGAILSATSQVVSGIRYKIVLSIVRXXXXXXXXXGLWEVDVVSQPWMASKYSLVGAKRVPKMDG 309
            FLV   LLL+  PT+G+ ALVCP+ MQGP ++  G +CGGPC   G+CAPGLVC+P + LA  + E     +   G++    +P LS+KLAD++ HSLGRAPRGVCV E+S    +         ++   +   +  ++ RE  ER  IMG+DDLLRPE +LH+SQ     + EG     A A   GG   RQG+CPGCP  V+VSDPEVVAAA A V+LM A+GDLG   E     +G I+SATSQVVSGIRY+IVL  V+         G W+VD+VSQPWM  KY+L+ A RV K  G
Sbjct:   16 FLVVASLLLHCYPTAGVTALVCPKEMQGPADRAVGEECGGPCNHLGTCAPGLVCKPTTALAVGKFEGGHGGDQASGVDTAHATPSLSAKLADIMDHSLGRAPRGVCVQEESGGVDEREAAVEGRAEVRDMAATSRRTQSLREEEERAVIMGKDDLLRPESTLHSSQAHAADVDEG----DARAGRPGG---RQGSCPGCPHQVEVSDPEVVAAADAAVELMGAKGDLGQGSEGKGWRVGRIVSATSQVVSGIRYRIVLLAVK----AGGGEGTWDVDIVSQPWMTPKYTLIKATRVTKAGG 305
The following BLAST results are available for this feature:
BLAST of NO19G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23596.18.000e-6548.84Proteinase inhibitor I25, cystatin [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004430NSK004430Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00980.1NO19G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100139g2gene6854Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00980.1NO19G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00980 ID=NO19G00980|Name=NO19G00980|organism=Nannochloropsis oceanica|type=gene|length=2488bp
TGCCATTTAGTCGTTGTGGCGCGTCGTTGAAAGTATTTTTTTCTTCTCCC
ACGAAATGCAAGCATGTCGAGCGGAGTGTGAGAAAAGAGCATTCATGAGC
AGAAGCATTCACCAGCGCAAGTGCCCAAGCCGCCCCCACGACAGCAAGCA
CTCATCACCTTTCCGAAGCCAGCGATCAAGCATAGAGGAAGACATGATAT
TTACACAAGAGCGATACAGATCACAATAGCTGATATTCTATTTTTTATTT
TTTTAGTCCCCCGTGTGGACATCTCGTGGGTTCCTGAATAACACACGGAA
AATAGGGGGGAAAGGTACAGAGAGCACGTCTCAAGTGCCCACCACGGCGT
CGACCCGGGAAATTAATAGAAATTGTGCTTCGGATGTTGTCTTTATTTAG
CTGGTGTGGTTATTGCTCTCAATGACGAGAATTTTGCCTTGAAAATGAAG
GAGAGGTGAAGGAGAGTTTGACGGGCCGCCCGTCACTTTGAACACGAGCG
AGCACCTCGCTCCGAAAAAAAAAAATACCGTGTGATTGCTGGTTTGCCTG
TTTTTTTACATTCACAGCATGACCAGCACTAACGCACTGCACTAACTCCC
CCCCATGTACCACAACAACACAAGCGCTGTGGCAAAGCCGCGTGGAGCAC
CGTCGTTGTCGTCGTCGCCTTTGTAACCTTCGTCCCCTCGCCTCGCCTGC
ACGCCCATCCCTCAGTCAAGGCAGCCCGTAGCATAAGCATGCCTGCCCGC
CAACATTACCGCTCCGTCCTCCCCCTTCCATTCCTTTTCCTTGTCTCCAA
CCTTCTCCTCCTTTACACTCGTCCTACCTCGGGAATGAACGCCCTCGTCT
GTCCTGAGGGGATGCAAGGCCCGCTCAACCAACCTGAAGGCGCGGACTGC
GGTGGTCCCTGTGGACAATTTGGCTCTTGCGCCCCCGGTTTGGTGTGCCG
CCCCATTTCCGACCTGGCCAAAGAGCAGGTGGAGGAAGAGGGAGAAGAAG
GGATGGAGAAAGGGGTAGGAAGCCCGATGTTGTCGTCCAAGTTGGCCGAT
TTGGTCCATCACTCCTTGGGGCGGGCTCCGCGAGGAGTGTGTGTGCCGGA
GGACAGCATGAAGGCAAGCGATGAGACTTTTGGAAACGACATTATGAGAC
GATCAGGTGCTCGTAAAGCAGCGGAAGCGACGCGGGAGTTGGGGGAGAGG
GTTGCCATCATGGGGGAGGACGACCTGTTGCGCCCTGAAGGCAGCCTGCA
TGCTTCTCAGCAGCCGCAGCAGCTGCCGGAGGGACGCAATGCCTTGCCCG
CGGCAGCAGAAGCAAGCGGTGGTAAAGTGCCACGACAGGGGAATTGTCCT
GGGTGTCCTCAGAACGTGGACGTAAGCGACCCGGAGGTTGTGGCCGCGGC
CAAGGCCGGGGTGAAGTTAATGAAGGCACGAGGTGACCTTGGATCGGCGG
AAGAAAGCAACAACTTGAATTTGGGGGCTATCCTGAGTGCAACGAGCCAG
GTTGTGAGCGGGATTCGATACAAGATTGTCTTGTCGATCGTGCGCGGAGG
AGGAGGAGGGGGTGGAGGGGAGGGGTTATGGGAGGTAGATGTAGTGAGTC
AGCCTTGGATGGCATCCAAATATTCCTTGGTGGGGGCGAAGAGGGTGCCT
AAGATGGATGGGGGTAACTAGATGCATTTGGGATGGAGCGAGGGAAGGAA
GGAGGGGTAGATGGTGTTGCGATTTTTCTGTGGGGAATTGAGGAGGAGTG
AGATAAGGAGGGTTGCGCTCGATGGACGTAGGTGGACCTAGTGGGTTAGC
CGTTAGGGCCGTTTGAGTTACCGTTGGTGGGGACGGAAAAAGTTCCGAAG
AGGGAGGTAGGGAGGCGGGGAGGGAGGGGAAGTTGGGTTTTCAAATAAAT
AAGCTTGTCAGTGAGTGGAAGGGATGGATGGGAAGGAGTAACTTAAGGAG
GAAGGGTGGGGGGGCGGAATTGAGAAAAAAGCACTCAATGAAAGGAGACG
AACGACGCCCGTTGCTCTTAATTCGAATAAAAAGGGGGTACAAAAATATG
TAGAGAAAATTTGATAGTCAACACAGAAAGAGCTGACGACCAAAATGCGC
GAACGGGGGAGAGAGAGAGGGGGGGGAAAGAGAAATAATCCGCGAGATAT
TTGTGGCAGGGGGGCAAAGCTGGAAGAATAAGATGGGCAAAATAGGAACG
AGCGAGGGGATTGGAAGGCAAGGAGGAGGGAAAAGAGGAATGGGAGGAGA
AAGGAGCGTGTGGGTGTGTACATGGATGCGGATACCTCCGAAGTTGTAAT
CGAGGGAAAAAGAAGACGACAAGAGGGTATTTTAAAGAAGAATCGTCAAG
AGTAAAGAGACAGAAGACCAACTACGACAGTTGGAGATATTGGATTCGAA
ACGGACGAGAGAACGACGGTTACAGCAGTCGAACAGGAGGAGGGGACGGT
GGGACGAGAAGCAAAAGCTGATGGAAGACATGTTTGCT
back to top

protein sequence of NO19G00980.1

>NO19G00980.1-protein ID=NO19G00980.1-protein|Name=NO19G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPARQHYRSVLPLPFLFLVSNLLLLYTRPTSGMNALVCPEGMQGPLNQPE
GADCGGPCGQFGSCAPGLVCRPISDLAKEQVEEEGEEGMEKGVGSPMLSS
KLADLVHHSLGRAPRGVCVPEDSMKASDETFGNDIMRRSGARKAAEATRE
LGERVAIMGEDDLLRPEGSLHASQQPQQLPEGRNALPAAAEASGGKVPRQ
GNCPGCPQNVDVSDPEVVAAAKAGVKLMKARGDLGSAEESNNLNLGAILS
ATSQVVSGIRYKIVLSIVRGGGGGGGGEGLWEVDVVSQPWMASKYSLVGA
KRVPKMDGGN*
back to top
Synonyms
Publications