NO19G00980.1, NO19G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00980.1
Unique NameNO19G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2488
Alignment locationchr19:327721..330208 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:327721..330208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00980.1 vs.
Match: EWM23596.1 (Proteinase inhibitor I25, cystatin [Nannochloropsis gaditana])

HSP 1 Score: 268.1 bits (684), Expect = 3.500e-68
Identity = 151/301 (50.17%), Postives = 193/301 (64.12%), Query Frame = 0 
Query:   17 FLVSNLLLLYTRPTSGMNALVCPEGMQGPLNQPEGADCGGPCGQFGSCAPGLVCRPISDLAKEQVEE----EGEEGMEKGVGSPMLSSKLADLVHHSLGRAPRGVCVPEDSMKASDETFG----NDIMRRSGARKAAEATRELGERVAIMGEDDLLRPEGSLHASQ-QPQQLPEGRNALPAAAEASGGKVPRQGNCPGCPQNVDVSDPEVVAAAKAGVKLMKARGDLGSAEESNNLNLGAILSATSQVVSGIRYKIVLSIVRGGGGGGGGEGLWEVDVVSQPWMASKYSLVGAKRVPKMDG 309
            FLV   LLL+  PT+G+ ALVCP+ MQGP ++  G +CGGPC   G+CAPGLVC+P + LA  + E     +   G++    +P LS+KLAD++ HSLGRAPRGVCV E+S    +         ++   +   +  ++ RE  ER  IMG+DDLLRPE +LH+SQ     + EG     A A   GG   RQG+CPGCP  V+VSDPEVVAAA A V+LM A+GDLG   E     +G I+SATSQVVSGIRY+IVL  V+     GGGEG W+VD+VSQPWM  KY+L+ A RV K  G
Sbjct:   16 FLVVASLLLHCYPTAGVTALVCPKEMQGPADRAVGEECGGPCNHLGTCAPGLVCKPTTALAVGKFEGGHGGDQASGVDTAHATPSLSAKLADIMDHSLGRAPRGVCVQEESGGVDEREAAVEGRAEVRDMAATSRRTQSLREEEERAVIMGKDDLLRPESTLHSSQAHAADVDEG----DARAGRPGG---RQGSCPGCPHQVEVSDPEVVAAADAAVELMGAKGDLGQGSEGKGWRVGRIVSATSQVVSGIRYRIVLLAVK----AGGGEGTWDVDIVSQPWMTPKYTLIKATRVTKAGG 305
The following BLAST results are available for this feature:
BLAST of NO19G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23596.13.500e-6850.17Proteinase inhibitor I25, cystatin [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00980NO19G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00980.1NO19G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00980.1.cds1NO19G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00980.1 ID=NO19G00980.1|Name=NO19G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp
TGCCATTTAGTCGTTGTGGCGCGTCGTTGAAAGTATTTTTTTCTTCTCCC
ACGAAATGCAAGCATGTCGAGCGGAGTGTGAGAAAAGAGCATTCATGAGC
AGAAGCATTCACCAGCGCAAGTGCCCAAGCCGCCCCCACGACAGCAAGCA
CTCATCACCTTTCCGAAGCCAGCGATCAAGCATAGAGGAAGACATGATAT
TTACACAAGAGCGATACAGATCACAATAGCTGATATTCTATTTTTTATTT
TTTTAGTCCCCCGTGTGGACATCTCGTGGGTTCCTGAATAACACACGGAA
AATAGGGGGGAAAGGTACAGAGAGCACGTCTCAAGTGCCCACCACGGCGT
CGACCCGGGAAATTAATAGAAATTGTGCTTCGGATGTTGTCTTTATTTAG
CTGGTGTGGTTATTGCTCTCAATGACGAGAATTTTGCCTTGAAAATGAAG
GAGAGGTGAAGGAGAGTTTGACGGGCCGCCCGTCACTTTGAACACGAGCG
AGCACCTCGCTCCGAAAAAAAAAAATACCGTGTGATTGCTGGTTTGCCTG
TTTTTTTACATTCACAGCATGACCAGCACTAACGCACTGCACTAACTCCC
CCCCATGTACCACAACAACACAAGCGCTGTGGCAAAGCCGCGTGGAGCAC
CGTCGTTGTCGTCGTCGCCTTTGTAACCTTCGTCCCCTCGCCTCGCCTGC
ACGCCCATCCCTCAGTCAAGGCAGCCCGTAGCATAAGCATGCCTGCCCGC
CAACATTACCGCTCCGTCCTCCCCCTTCCATTCCTTTTCCTTGTCTCCAA
CCTTCTCCTCCTTTACACTCGTCCTACCTCGGGAATGAACGCCCTCGTCT
GTCCTGAGGGGATGCAAGGCCCGCTCAACCAACCTGAAGGCGCGGACTGC
GGTGGTCCCTGTGGACAATTTGGCTCTTGCGCCCCCGGTTTGGTGTGCCG
CCCCATTTCCGACCTGGCCAAAGAGCAGGTGGAGGAAGAGGGAGAAGAAG
GGATGGAGAAAGGGGTAGGAAGCCCGATGTTGTCGTCCAAGTTGGCCGAT
TTGGTCCATCACTCCTTGGGGCGGGCTCCGCGAGGAGTGTGTGTGCCGGA
GGACAGCATGAAGGCAAGCGATGAGACTTTTGGAAACGACATTATGAGAC
GATCAGGTGCTCGTAAAGCAGCGGAAGCGACGCGGGAGTTGGGGGAGAGG
GTTGCCATCATGGGGGAGGACGACCTGTTGCGCCCTGAAGGCAGCCTGCA
TGCTTCTCAGCAGCCGCAGCAGCTGCCGGAGGGACGCAATGCCTTGCCCG
CGGCAGCAGAAGCAAGCGGTGGTAAAGTGCCACGACAGGGGAATTGTCCT
GGGTGTCCTCAGAACGTGGACGTAAGCGACCCGGAGGTTGTGGCCGCGGC
CAAGGCCGGGGTGAAGTTAATGAAGGCACGAGGTGACCTTGGATCGGCGG
AAGAAAGCAACAACTTGAATTTGGGGGCTATCCTGAGTGCAACGAGCCAG
GTTGTGAGCGGGATTCGATACAAGATTGTCTTGTCGATCGTGCGCGGAGG
AGGAGGAGGGGGTGGAGGGGAGGGGTTATGGGAGGTAGATGTAGTGAGTC
AGCCTTGGATGGCATCCAAATATTCCTTGGTGGGGGCGAAGAGGGTGCCT
AAGATGGATGGGGGTAACTAGATGCATTTGGGATGGAGCGAGGGAAGGAA
GGAGGGGTAGATGGTGTTGCGATTTTTCTGTGGGGAATTGAGGAGGAGTG
AGATAAGGAGGGTTGCGCTCGATGGACGTAGGTGGACCTAGTGGGTTAGC
CGTTAGGGCCGTTTGAGTTACCGTTGGTGGGGACGGAAAAAGTTCCGAAG
AGGGAGGTAGGGAGGCGGGGAGGGAGGGGAAGTTGGGTTTTCAAATAAAT
AAGCTTGTCAGTGAGTGGAAGGGATGGATGGGAAGGAGTAACTTAAGGAG
GAAGGGTGGGGGGGCGGAATTGAGAAAAAAGCACTCAATGAAAGGAGACG
AACGACGCCCGTTGCTCTTAATTCGAATAAAAAGGGGGTACAAAAATATG
TAGAGAAAATTTGATAGTCAACACAGAAAGAGCTGACGACCAAAATGCGC
GAACGGGGGAGAGAGAGAGGGGGGGGAAAGAGAAATAATCCGCGAGATAT
TTGTGGCAGGGGGGCAAAGCTGGAAGAATAAGATGGGCAAAATAGGAACG
AGCGAGGGGATTGGAAGGCAAGGAGGAGGGAAAAGAGGAATGGGAGGAGA
AAGGAGCGTGTGGGTGTGTACATGGATGCGGATACCTCCGAAGTTGTAAT
CGAGGGAAAAAGAAGACGACAAGAGGGTATTTTAAAGAAGAATCGTCAAG
AGTAAAGAGACAGAAGACCAACTACGACAGTTGGAGATATTGGATTCGAA
ACGGACGAGAGAACGACGGTTACAGCAGTCGAACAGGAGGAGGGGACGGT
GGGACGAGAAGCAAAAGCTGATGGAAGACATGTTTGCT
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protein sequence of NO19G00980.1

>NO19G00980.1-protein ID=NO19G00980.1-protein|Name=NO19G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPARQHYRSVLPLPFLFLVSNLLLLYTRPTSGMNALVCPEGMQGPLNQPE
GADCGGPCGQFGSCAPGLVCRPISDLAKEQVEEEGEEGMEKGVGSPMLSS
KLADLVHHSLGRAPRGVCVPEDSMKASDETFGNDIMRRSGARKAAEATRE
LGERVAIMGEDDLLRPEGSLHASQQPQQLPEGRNALPAAAEASGGKVPRQ
GNCPGCPQNVDVSDPEVVAAAKAGVKLMKARGDLGSAEESNNLNLGAILS
ATSQVVSGIRYKIVLSIVRGGGGGGGGEGLWEVDVVSQPWMASKYSLVGA
KRVPKMDGGN*
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mRNA from alignment at chr19:327721..330208+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00980.1 ID=NO19G00980.1|Name=NO19G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp|location=Sequence derived from alignment at chr19:327721..330208+ (Nannochloropsis oceanica)
TGCCATTTAGTCGTTGTGGCGCGTCGTTGAAAGTATTTTTTTCTTCTCCC
ACGAAATGCAAGCATGTCGAGCGGAGTGTGAGAAAAGAGCATTCATGAGC
AGAAGCATTCACCAGCGCAAGTGCCCAAGCCGCCCCCACGACAGCAAGCA
CTCATCACCTTTCCGAAGCCAGCGATCAAGCATAGAGGAAGACATGATAT
TTACACAAGAGCGATACAGATCACAATAGCTGATATTCTATTTTTTATTT
TTTTAGTCCCCCGTGTGGACATCTCGTGGGTTCCTGAATAACACACGGAA
AATAGGGGGGAAAGGTACAGAGAGCACGTCTCAAGTGCCCACCACGGCGT
CGACCCGGGAAATTAATAGAAATTGTGCTTCGGATGTTGTCTTTATTTAG
CTGGTGTGGTTATTGCTCTCAATGACGAGAATTTTGCCTTGAAAATGAAG
GAGAGGTGAAGGAGAGTTTGACGGGCCGCCCGTCACTTTGAACACGAGCG
AGCACCTCGCTCCGAAAAAAAAAAATACCGTGTGATTGCTGGTTTGCCTG
TTTTTTTACATTCACAGCATGACCAGCACTAACGCACTGCACTAACTCCC
CCCCATGTACCACAACAACACAAGCGCTGTGGCAAAGCCGCGTGGAGCAC
CGTCGTTGTCGTCGTCGCCTTTGTAACCTTCGTCCCCTCGCCTCGCCTGC
ACGCCCATCCCTCAGTCAAGGCAGCCCGTAGCATAAGCATGCCTGCCCGC
CAACATTACCGCTCCGTCCTCCCCCTTCCATTCCTTTTCCTTGTCTCCAA
CCTTCTCCTCCTTTACACTCGTCCTACCTCGGGAATGAACGCCCTCGTCT
GTCCTGAGGGGATGCAAGGCCCGCTCAACCAACCTGAAGGCGCGGACTGC
GGTGGTCCCTGTGGACAATTTGGCTCTTGCGCCCCCGGTTTGGTGTGCCG
CCCCATTTCCGACCTGGCCAAAGAGCAGGTGGAGGAAGAGGGAGAAGAAG
GGATGGAGAAAGGGGTAGGAAGCCCGATGTTGTCGTCCAAGTTGGCCGAT
TTGGTCCATCACTCCTTGGGGCGGGCTCCGCGAGGAGTGTGTGTGCCGGA
GGACAGCATGAAGGCAAGCGATGAGACTTTTGGAAACGACATTATGAGAC
GATCAGGTGCTCGTAAAGCAGCGGAAGCGACGCGGGAGTTGGGGGAGAGG
GTTGCCATCATGGGGGAGGACGACCTGTTGCGCCCTGAAGGCAGCCTGCA
TGCTTCTCAGCAGCCGCAGCAGCTGCCGGAGGGACGCAATGCCTTGCCCG
CGGCAGCAGAAGCAAGCGGTGGTAAAGTGCCACGACAGGGGAATTGTCCT
GGGTGTCCTCAGAACGTGGACGTAAGCGACCCGGAGGTTGTGGCCGCGGC
CAAGGCCGGGGTGAAGTTAATGAAGGCACGAGGTGACCTTGGATCGGCGG
AAGAAAGCAACAACTTGAATTTGGGGGCTATCCTGAGTGCAACGAGCCAG
GTTGTGAGCGGGATTCGATACAAGATTGTCTTGTCGATCGTGCGCGGAGG
AGGAGGAGGGGGTGGAGGGGAGGGGTTATGGGAGGTAGATGTAGTGAGTC
AGCCTTGGATGGCATCCAAATATTCCTTGGTGGGGGCGAAGAGGGTGCCT
AAGATGGATGGGGGTAACTAGATGCATTTGGGATGGAGCGAGGGAAGGAA
GGAGGGGTAGATGGTGTTGCGATTTTTCTGTGGGGAATTGAGGAGGAGTG
AGATAAGGAGGGTTGCGCTCGATGGACGTAGGTGGACCTAGTGGGTTAGC
CGTTAGGGCCGTTTGAGTTACCGTTGGTGGGGACGGAAAAAGTTCCGAAG
AGGGAGGTAGGGAGGCGGGGAGGGAGGGGAAGTTGGGTTTTCAAATAAAT
AAGCTTGTCAGTGAGTGGAAGGGATGGATGGGAAGGAGTAACTTAAGGAG
GAAGGGTGGGGGGGCGGAATTGAGAAAAAAGCACTCAATGAAAGGAGACG
AACGACGCCCGTTGCTCTTAATTCGAATAAAAAGGGGGTACAAAAATATG
TAGAGAAAATTTGATAGTCAACACAGAAAGAGCTGACGACCAAAATGCGC
GAACGGGGGAGAGAGAGAGGGGGGGGAAAGAGAAATAATCCGCGAGATAT
TTGTGGCAGGGGGGCAAAGCTGGAAGAATAAGATGGGCAAAATAGGAACG
AGCGAGGGGATTGGAAGGCAAGGAGGAGGGAAAAGAGGAATGGGAGGAGA
AAGGAGCGTGTGGGTGTGTACATGGATGCGGATACCTCCGAAGTTGTAAT
CGAGGGAAAAAGAAGACGACAAGAGGGTATTTTAAAGAAGAATCGTCAAG
AGTAAAGAGACAGAAGACCAACTACGACAGTTGGAGATATTGGATTCGAA
ACGGACGAGAGAACGACGGTTACAGCAGTCGAACAGGAGGAGGGGACGGT
GGGACGAGAAGCAAAAGCTGATGGAAGACATGTTTGCT
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Coding sequence (CDS) from alignment at chr19:327721..330208+

>NO19G00980.1 ID=NO19G00980.1|Name=NO19G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr19:327721..330208+ (Nannochloropsis oceanica)
ATGCCTGCCCGCCAACATTACCGCTCCGTCCTCCCCCTTCCATTCCTTTT
CCTTGTCTCCAACCTTCTCCTCCTTTACACTCGTCCTACCTCGGGAATGA
ACGCCCTCGTCTGTCCTGAGGGGATGCAAGGCCCGCTCAACCAACCTGAA
GGCGCGGACTGCGGTGGTCCCTGTGGACAATTTGGCTCTTGCGCCCCCGG
TTTGGTGTGCCGCCCCATTTCCGACCTGGCCAAAGAGCAGGTGGAGGAAG
AGGGAGAAGAAGGGATGGAGAAAGGGGTAGGAAGCCCGATGTTGTCGTCC
AAGTTGGCCGATTTGGTCCATCACTCCTTGGGGCGGGCTCCGCGAGGAGT
GTGTGTGCCGGAGGACAGCATGAAGGCAAGCGATGAGACTTTTGGAAACG
ACATTATGAGACGATCAGGTGCTCGTAAAGCAGCGGAAGCGACGCGGGAG
TTGGGGGAGAGGGTTGCCATCATGGGGGAGGACGACCTGTTGCGCCCTGA
AGGCAGCCTGCATGCTTCTCAGCAGCCGCAGCAGCTGCCGGAGGGACGCA
ATGCCTTGCCCGCGGCAGCAGAAGCAAGCGGTGGTAAAGTGCCACGACAG
GGGAATTGTCCTGGGTGTCCTCAGAACGTGGACGTAAGCGACCCGGAGGT
TGTGGCCGCGGCCAAGGCCGGGGTGAAGTTAATGAAGGCACGAGGTGACC
TTGGATCGGCGGAAGAAAGCAACAACTTGAATTTGGGGGCTATCCTGAGT
GCAACGAGCCAGGTTGTGAGCGGGATTCGATACAAGATTGTCTTGTCGAT
CGTGCGCGGAGGAGGAGGAGGGGGTGGAGGGGAGGGGTTATGGGAGGTAG
ATGTAGTGAGTCAGCCTTGGATGGCATCCAAATATTCCTTGGTGGGGGCG
AAGAGGGTGCCTAAGATGGATGGGGGTAACTAG
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Synonyms
Publications