NO19G00960, NO19G00960 (gene) Nannochloropsis oceanica

Overview
NameNO19G00960
Unique NameNO19G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length570
Alignment locationchr19:323200..323769 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:323200..323769 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036280Multihaem_cyt_sf
IPR019351DUF2039
Homology
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: XP_005855134.1 (hypothetical protein NGA_2024610, partial [Nannochloropsis gaditana CCMP526] >XP_005855332.1 hypothetical protein NGA_2024620, partial [Nannochloropsis gaditana CCMP526] >EKU21027.1 hypothetical protein NGA_2024620, partial [Nannochloropsis gaditana CCMP526] >EKU21225.1 hypothetical protein NGA_2024610, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.7 bits (631), Expect = 3.000e-62
Identity = 122/153 (79.74%), Postives = 132/153 (86.27%), Query Frame = 0 
Query:    1 MSGQRRNRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDRLNGVMDTKAVVE 154
            MSGQRR RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKY+PLS PATCT CHTKSVRAAYHQ+CDPCA +R VCAGC EPK IV KTGAAAEK++E KR  LE +++  GLHLRK RKILREFDR  G MD +  +E
Sbjct:    4 MSGQRR-RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIK--GLHLRKQRKILREFDRSGGDMDVEGAME 153
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: EWM23590.1 (Protein of unknown function DUF2039 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 121/153 (79.08%), Postives = 131/153 (85.62%), Query Frame = 0 
Query:    1 MSGQRRNRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDRLNGVMDTKAVVE 154
            MSGQRR RGPAHQNTFAFRHNPKSKKTERILASPIEGLC RCHEKVEWRKKYRKY+PLS PATCT CHTKSVRAAYHQ+CDPCA +R VCAGC EPK IV KTGAAAEK++E KR  LE +++  GLHLRK RKILREFDR  G MD +  +E
Sbjct:    1 MSGQRR-RGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIK--GLHLRKQRKILREFDRSGGDMDVEGAME 150
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: EWM23591.1 (Protein of unknown function DUF2039 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 121/153 (79.08%), Postives = 131/153 (85.62%), Query Frame = 0 
Query:    1 MSGQRRNRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDRLNGVMDTKAVVE 154
            MSGQRR RGPAHQNTFAFRHNPKSKKTERILASPIEGLC RCHEKVEWRKKYRKY+PLS PATCT CHTKSVRAAYHQ+CDPCA +R VCAGC EPK IV KTGAAAEK++E KR  LE +++  GLHLRK RKILREFDR  G MD +  +E
Sbjct:   14 MSGQRR-RGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIK--GLHLRKQRKILREFDRSGGDMDVEGAME 163
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: EWM23592.1 (Protein of unknown function DUF2039 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 121/153 (79.08%), Postives = 131/153 (85.62%), Query Frame = 0 
Query:    1 MSGQRRNRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDRLNGVMDTKAVVE 154
            MSGQRR RGPAHQNTFAFRHNPKSKKTERILASPIEGLC RCHEKVEWRKKYRKY+PLS PATCT CHTKSVRAAYHQ+CDPCA +R VCAGC EPK IV KTGAAAEK++E KR  LE +++  GLHLRK RKILREFDR  G MD +  +E
Sbjct:   15 MSGQRR-RGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIK--GLHLRKQRKILREFDRSGGDMDVEGAME 164
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: OWZ10027.1 (hypothetical protein PHMEG_00017186 [Phytophthora megakarya])

HSP 1 Score: 146.7 bits (369), Expect = 7.100e-32
Identity = 80/160 (50.00%), Postives = 99/160 (61.88%), Query Frame = 0 
Query:    1 MSGQRRN---RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNL----EGKRAELEMEVRGM-----GLHLRKVRKILREFDRLNGVMDT 149
            MS QR N   R P HQN FAF+HNPKSKKTERIL+ PI GLC++C  ++EWRKKYRKY+PL+ P +C  CH K+V +AYH  CDPCA ER +CA C   K +V     A+E+ L    E K  E E E+ GM       +LRK+ K         GV +T
Sbjct:    1 MSSQRGNVKKRAPKHQNAFAFKHNPKSKKTERILSMPIHGLCEKCRAQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLKKEVV-----ASEQELLAEHEKKEREFENELEGMRERDRRAYLRKLEKEKEAITNGEGVSNT 155
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: XP_008906456.1 (hypothetical protein PPTG_12019 [Phytophthora parasitica INRA-310] >ETI46031.1 hypothetical protein F443_09550 [Phytophthora parasitica P1569] >ETK85997.1 hypothetical protein L915_09344 [Phytophthora parasitica] >ETL39423.1 hypothetical protein L916_09250 [Phytophthora parasitica] >ETL92549.1 hypothetical protein L917_09183 [Phytophthora parasitica] >ETM45841.1 hypothetical protein L914_09209 [Phytophthora parasitica] >ETN08168.1 hypothetical protein PPTG_12019 [Phytophthora parasitica INRA-310] >ETP15864.1 hypothetical protein F441_09483 [Phytophthora parasitica CJ01A1] >ETP43917.1 hypothetical protein F442_09457 [Phytophthora parasitica P10297] >KUG01889.1 hypothetical protein AM587_10010604 [Phytophthora nicotianae])

HSP 1 Score: 146.0 bits (367), Expect = 1.200e-31
Identity = 76/146 (52.05%), Postives = 98/146 (67.12%), Query Frame = 0 
Query:    1 MSGQRRN---RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNL--EGKRAELEMEVRGMGLHLRKVRKILREFDR 142
            MS QR N   R P HQNTFAF+HNPKSKKT+RIL+ PI GLC++C +++EWRKKYRKY+PL+ P +C  CH K+V +AYH  CDPCA ER +CA C   K IV     A+E+ L  E ++ E E E    G+  R  R  LR+ ++
Sbjct:    1 MSSQRGNVKKRAPKHQNTFAFKHNPKSKKTDRILSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLTKEIV-----ASEQELLAEHEKKEREFENTLEGMRERDRRAYLRKLEK 141
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: XP_024575986.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG39617.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 146.0 bits (367), Expect = 1.200e-31
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 0 
Query:    1 MSGQRRN---RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNL----EGKRAELEMEVRGMGLHLRK--VRKILREFDRLN 144
            MS QR N   R P HQN FAF+HNPKSKKTERIL+ PI GLC++C +++EWRKKYRKY+PLS P +C  CH K+V +AYH  C+ CA ER VCA C   K +V     A+E+ L    E KR ELE  + GM    R+  VRK+ +E + ++
Sbjct:    1 MSSQRGNVKKRAPKHQNAFAFKHNPKSKKTERILSMPILGLCEKCRKQIEWRKKYRKYKPLSQPGSCIYCHQKTVTSAYHASCEVCAKERDVCAKCCSAKEVV-----ASEQELLAAQESKRCELENTLEGMRERDRRAYVRKMDKEIESIS 147
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: ETO74720.1 (hypothetical protein F444_09615 [Phytophthora parasitica P1976])

HSP 1 Score: 145.6 bits (366), Expect = 1.600e-31
Identity = 75/146 (51.37%), Postives = 96/146 (65.75%), Query Frame = 0 
Query:    1 MSGQRRN---RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGM--GLHLRKVRKILREFDR 142
            MS QR N   R P HQNTFAF+HNPKSKKT+RIL+ PI GLC++C +++EWRKKYRKY+PL+ P +C  CH K+V +AYH  CDPCA ER +CA C   K IV     A+E+ L  +  E E E      G+  R  R  LR+ ++
Sbjct:    1 MSSQRGNVKKRAPKHQNTFAFKHNPKSKKTDRILSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLTKEIV-----ASEQELLAEHEEKEREFENTLEGMRERDRRAYLRKLEK 141
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: GAX98219.1 (Hypothetical protein PINS_006112 [Pythium insidiosum])

HSP 1 Score: 145.2 bits (365), Expect = 2.100e-31
Identity = 74/139 (53.24%), Postives = 92/139 (66.19%), Query Frame = 0 
Query:    1 MSGQRRN---RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGM--GLHLRKVRK 135
            MS QR N   + P HQNTFAF+HNPKSKKTE IL+ PI GLC +C++++EWRKKYRKY+PL+ PATCT CH K++ +AYH  CD CA ER VCA C + K I+      A    +  + E     RG   GL LRK+ K
Sbjct:    1 MSSQRGNVKKKAPKHQNTFAFKHNPKSKKTEHILSLPIRGLCDKCYKQIEWRKKYRKYKPLTQPATCTYCHQKAITSAYHVACDGCAKERDVCAKCCQSKEIIPSQEEVAATKKQASK-EFRGSARGASDGLVLRKLEK 138
[Close]
BLAST of NO19G00960 vs. NCBI_GenBank
Match: XP_009526032.1 (hypothetical protein PHYSODRAFT_504062 [Phytophthora sojae] >EGZ16974.1 hypothetical protein PHYSODRAFT_504062 [Phytophthora sojae])

HSP 1 Score: 144.1 bits (362), Expect = 4.600e-31
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 0 
Query:    1 MSGQRRN---RGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIVVKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDR 142
            MS QR N   R P HQN FAF+HNPKSKKTERI++ PI GLC++C +++EWRKKYRKY+PL+ P +C  CH K+V +AYH  CDPCA ER +CA C   K IV +     E   E ++ E E E +  G+  R  R  LR+ ++
Sbjct:    1 MSTQRGNVKKRAPKHQNAFAFKHNPKSKKTERIMSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLSKEIVAR---CQELLAEHEKKEREFENQLEGMRERDRRAYLRKLEK 141
The following BLAST results are available for this feature:
BLAST of NO19G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855134.13.000e-6279.74hypothetical protein NGA_2024610, partial [Nannoch... [more]
EWM23590.11.100e-6179.08Protein of unknown function DUF2039 [Nannochlorops... [more]
EWM23591.11.100e-6179.08Protein of unknown function DUF2039 [Nannochlorops... [more]
EWM23592.11.100e-6179.08Protein of unknown function DUF2039 [Nannochlorops... [more]
OWZ10027.17.100e-3250.00hypothetical protein PHMEG_00017186 [Phytophthora ... [more]
XP_008906456.11.200e-3152.05hypothetical protein PPTG_12019 [Phytophthora para... [more]
XP_024575986.11.200e-3151.97Uncharacterized conserved protein [Plasmopara hals... [more]
ETO74720.11.600e-3151.37hypothetical protein F444_09615 [Phytophthora para... [more]
GAX98219.12.100e-3153.24Hypothetical protein PINS_006112 [Pythium insidios... [more]
XP_009526032.14.600e-3150.69hypothetical protein PHYSODRAFT_504062 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004427NSK004427Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00960.1NO19G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598940gene_7489Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100139g4gene6856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00960.1NO19G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00960 ID=NO19G00960|Name=NO19G00960|organism=Nannochloropsis oceanica|type=gene|length=570bp
ATGAGCGGGCAACGACGCAACCGTGGCCCCGCGCACCAAAACACCTTCGC
CTTCAGACACAATCCCAAGTCGAAAAAAACCGAGCGTATCCTCGCGTCTC
CCATCGAAGGCCTCTGTCAGCGCTGTCACGAAAAAGTCGAATGGCGCAAA
AAATATAGAAAGTACCGTCCCCTCTCCACGCCCGCTACCTGCACCTCCTG
CCACACCAAGAGCGTGCGTGCTGCCTATCACCAGCTCTGTGATCCCTGCG
CAGCCGAACGAAAGGTCTGTGCGGGCTGCCGTGAACCCAAATTCATTGTC
GTCAAAACAGGGGCGGCGGCGGAGAAGAATTTGGAAGGGAAGAGGGCGGA
GCTCGAGATGGAGGTGAGGGGCATGGGATTGCATTTGAGGAAGGTACGGA
AGATATTGAGGGAGTTTGATCGACTTAACGGGGTGATGGATACGAAGGCG
GTCGTAGAGGCCGTGGTGAGGGAGGAGGAGGAGGAGGAAGAAGAGCTTAG
CGAGGGGGAGGAGGAGGAAGAGGAAGAAGGGGAGAAGGAAGGGGAGGAAG
ATTCTAGTGTAGAGGGGTAG
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protein sequence of NO19G00960.1

>NO19G00960.1-protein ID=NO19G00960.1-protein|Name=NO19G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MSGQRRNRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRK
KYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIV
VKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDRLNGVMDTKA
VVEAVVREEEEEEEELSEGEEEEEEEGEKEGEEDSSVEG*
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Synonyms
Publications