NO19G00850, NO19G00850 (gene) Nannochloropsis oceanica

Overview
NameNO19G00850
Unique NameNO19G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1781
Alignment locationchr19:290947..292727 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:290947..292727 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO19G00850 vs. NCBI_GenBank
Match: EWM23587.1 (hypothetical protein Naga_100139g15 [Nannochloropsis gaditana])

HSP 1 Score: 397.5 bits (1020), Expect = 5.200e-107
Identity = 238/406 (58.62%), Postives = 289/406 (71.18%), Query Frame = 0
Query:   24 KPIPRFTVPHRPYHNHRPVSFSSSSLSQVPPPKPSASVYSSRPATS-LLSLQAWPQTRDPKPAPADYPLAAARISITVIACLLTSYAHSSTDAICSSPVLASAAVTLAGSLISPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNFVSALRGIWVLPALPSSLPPLXTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTT-------------PRNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHRGMLRGLDGLEKLGRK 416
            KP+       RP H H P   S      + PP+P +S  S+ P++S LL   AWPQTRDP P P DYPLAAAR+ ITV+ACLLTSY+H+S  A+C+SPVLASAAVTLA SLI+PGLGQAAMCGSFAGMSS LLLP+F+ TL TG+ TS+LFEAFIHYRNAALGLGGRLG  AF++VN ++A +  +V+PA         + S F+ S    P     +L +L  F+ +SPYLPLT+ YG +G++ATIALREASDD+AAADPVRAAAVVGL+SAL VGV GHTSLG+LAAYGGAFVGMSLPSRL+YG++P LP  SP  ++    P                  +L +F++AG LGG VHGLTLH G WT PVA WGGKAG C+FVGVL+ RG+LR   GL+    K
Sbjct:   56 KPLSSRPTLARPSH-HMP---SPGICRNLHPPRPFSS--STAPSSSLLLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPA---------SSSPFSFS---SPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPXXXXXXXXXXXGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNAWTK 443          
BLAST of NO19G00850 vs. NCBI_GenBank
Match: XP_002290069.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91821.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 213.4 bits (542), Expect = 1.400e-51
Identity = 138/334 (41.32%), Postives = 187/334 (55.99%), Query Frame = 0
Query:   69 SLLSLQAWPQTRDPKPAPADYPLAAARISITVIACLLTSYAHSSTDAICSSPVLASAAVT-LAGSLISPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNFVSALRGIWVLPALPSSLPPLXTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTPRNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHRG 402
            +LL    WP  RDP     D+PL   RI+IT+++ L T Y H        SPVLAS+A+T L  + +   LGQAA CGSFAGMS   L P F   +L G++ S+ +E  IH +N  LG+GGRLG  AF++ + ++  RG+       S++        + +       + V+ +A                 +  +GA+ATI LRE+SDDS AADPVRA++V+GLL AL +          LA YGG+FVGM+LPSRLMYG+ P          A   +P TP  +L +FA AG L G++HG+T+HWG W      WGGKAG CAF G  L+RG
Sbjct:  135 TLLHRIKWPVQRDPPEVSPDFPLLLTRITITILSVLSTWYLHLFNG---YSPVLASSAITLLVSTCLDRRLGQAAFCGSFAGMSGGHLAPNFGTAVLLGVLASINYEVLIHMKNFCLGIGGRLGATAFLATSILAKYRGV-------SAVGRKMRKGLWKSGSGGLSSIMVSMMA-----------------FHAIGAVATIFLRESSDDSGAADPVRASSVIGLLGALFL----KDPTSILALYGGSFVGMALPSRLMYGNAP--------GKAKQAQPQTPIGLLLSFAGAGALAGMIHGMTIHWGYWN---GGWGGKAGLCAFAGCWLYRG 426          
BLAST of NO19G00850 vs. NCBI_GenBank
Match: EJK73398.1 (hypothetical protein THAOC_04981 [Thalassiosira oceanica])

HSP 1 Score: 199.9 bits (507), Expect = 1.600e-47
Identity = 140/327 (42.81%), Postives = 184/327 (56.27%), Query Frame = 0
Query:   76 WPQTRDPKPAPADYPLAAARISITVIACLLTSYAHSSTDAICSSPVLASAAVT-LAGSLISPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNFVSALRGIWVLPALPSSLPPLXTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTPRNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHRG 402
            WP  RDP    +++PL   RI +T  + + T Y H        SPVLAS+AVT L  + +   LGQAA CGSFAGMS   LLP F    L G ++S  +E  I+  N  LG+GGRLG  AF++    +  RG+                      I       V + +S  + VA S  L     + ++GA+ATI LRE+SDDSAAADPVRA++VVG+L +L +    +    ALA YGG+FVGMSLPSRLMY       G++P +A P  +P +  N+L +FA AG + GLVH LT+H G WT     WGGKAG CAF G  ++RG
Sbjct:  350 WPLVRDPPGVASEFPLLVTRILVTCFSSVATWYLHLQNG---YSPVLASSAVTLLVSTCLDRRLGQAAFCGSFAGMSGGHLLPNFGSAALLGALSSASYELLININNVCLGIGGRLGATAFLATGIFAKYRGV--------------------RFIGRKLRRGVWSSSSGVSSVAISMIL-----FHIMGAVATIMLRESSDDSAAADPVRASSVVGVLGSLFI----NDPTSALALYGGSFVGMSLPSRLMY-------GNAPGNARP-GQPQSAANLLASFAGAGAIAGLVHALTIHSGYWT---GGWGGKAGLCAFAGCWVYRG 633          
BLAST of NO19G00850 vs. NCBI_GenBank
Match: XP_002290068.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91820.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 198.0 bits (502), Expect = 6.000e-47
Identity = 137/383 (35.77%), Postives = 199/383 (51.96%), Query Frame = 0
Query:   30 TVPHRPYHNHRPVSFSSSSLSQVPPPKPSASVYSSRP----------ATSLLSLQAWPQTRDPKPAPADYPLAAARISITVIACLLTSYAHSSTDAICSSPVLASAAVT-LAGSLISPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNFVSALRGIWVLPALPSSLPPLXTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTPRNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHRG 402
            T  + P    R +  S   +  +P P PS + + SRP          A++ L    WP   DP     ++PL   R ++T+++ L T Y H        SPVLAS+A+T L  + +   LGQAA+CG+ AGMS   L P F   +L G++ S+ +E  IH +N  LG+GGRLG  AF++ + V+  R +        S+        + +       V +                   M +  +GA+ATI LRE+SDD  AADPV+A++V+GL+ A+ +          +A YGG+FVGM+LPSRLM+GS P          A +++P TP  + T+FA+AG L G +HG+T+HWG W      WGGK G CAF G  L+RG
Sbjct:  312 TAVYSPISPQRDILGSPDFVDPIPSP-PSITQHYSRPKVRSQIDSNSASTYLRGVKWPVHSDPLGVSPEFPLLLTRSTVTILSALATWYLHLFNGC---SPVLASSAITLLVSTCVERRLGQAALCGTLAGMSGGHLAPNFGTAVLLGVLASINYEVLIHMKNFCLGIGGRLGATAFLATSVVAKYRRV-------GSVGRKLRRGIWKSGAGGLSSVMIT-----------------MMVFHAIGAVATICLRESSDDVGAADPVQASSVIGLMGAICLS----NPTAIMALYGGSFVGMALPSRLMHGSAP--------GKARISQPHTPVGMFTSFAVAGALAGAIHGMTIHWGYWN---GGWGGKIGLCAFAGCWLYRG 651          
BLAST of NO19G00850 vs. NCBI_GenBank
Match: EJK73397.1 (hypothetical protein THAOC_04980 [Thalassiosira oceanica])

HSP 1 Score: 182.6 bits (462), Expect = 2.600e-42
Identity = 133/328 (40.55%), Postives = 183/328 (55.79%), Query Frame = 0
Query:   76 WPQTRDPKPAPADYPLAAARISITVIACLLTSYAHSSTDAICSSPVLASAAVT-LAGSLISPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNFVSALRGIWVLPALPSSLPPLXTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTPRNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHRGM 403
            WP  RDP    +++PL   RI +T ++ + T Y          S VLAS+A+T L  + +   LGQAA CGSFAGMS   + P  S  LL  ++ S  +E  IH  N+ LG+GGRLG  AF++ + V+  +G+ ++                   +      S A ++S    VA S  L     + ++GA+ATI LRE+SDDSAAADPVRA++VVGL+ AL +          LA YGG+FVGMSLPSRLMY       G++P +A P  +P    ++L +FA AG   GL+H LT+H G WT     WGGKAG CAF G  ++R +
Sbjct:  155 WPLVRDPPGVASEFPLLMTRILVTCLSSVGTWYLSLYNG---YSAVLASSALTLLVSTCLDRRLGQAAFCGSFAGMSGGHIAPNLSVALLLSVLASASYEVLIHINNSCLGIGGRLGATAFLATSIVAKYQGVGIV----------------GKKLRRGVWKSGAGVSS----VAISMIL-----FHILGAVATIFLRESSDDSAAADPVRASSVVGLVGALFL----KDPTAILALYGGSFVGMSLPSRLMY-------GNAPGNARP-GQPQGAASLLASFAGAGAFAGLIHALTIHSGYWT---GGWGGKAGLCAFAGCWVYRAI 439          
BLAST of NO19G00850 vs. NCBI_GenBank
Match: OEU23671.1 (hypothetical protein FRACYDRAFT_177647 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 157.1 bits (396), Expect = 1.200e-34
Identity = 124/334 (37.13%), Postives = 177/334 (52.99%), Query Frame = 0
Query:   79 TRDPKPAPADYPLAAARISITVIAC--------LLTSYAHSSTDAICSSPVLASAAVTLAGSLI-SPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGG-RLGTIAFVSVNFVSALRGIWVLPALPSSLPPLXTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSA-AADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTPRNVLTNFAIAGLLGGLVHGLTLHWGMWTT-PVAAWGGKAGFCAFVGVLLHR 401
            T DPK   +DYPL   R+ I + +C        LLT+Y H +T+      V+ S+AVTL  S++    LGQAA+CGSFAGM S+ ++PT    L+ G +TS+L+E    +    LG+GG R G  AF+                LPS L  +   S++  S           L  L      +  LP+   Y  +G++ATI LRE SDD+A A DPVRA+AV+GL  AL++    +  +  LA YGG+ VGMSLPS+LM  ++                     +++  F IAG   GL+HG T+ W +W+    A+WGGKAG CAF+G +++R
Sbjct:    5 TNDPKGMSSDYPLGITRMLIIIGSCYLTWFVPQLLTNYPHHATN------VMVSSAVTLVCSMMFDKRLGQAALCGSFAGMCSTSIIPTTKLALILGSITSILYEIMPFF----LGVGGERSGITAFI---------------VLPSLLNGIGISSSYRGS---------KRLLKLSALNIHTTLLPMAFWY-AIGSIATIVLREISDDTAVAVDPVRASAVIGLAGALLL---KYDKIAVLAVYGGSIVGMSLPSKLMMNNR---SSXXXXXXXXXXXXXXXLSLVLAFGIAGAFSGLIHGATIDWKLWSDHGGASWGGKAGTCAFLGCIIYR 297          
The following BLAST results are available for this feature:
BLAST of NO19G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM23587.15.200e-10758.62hypothetical protein Naga_100139g15 [Nannochlorops... [more]
XP_002290069.11.400e-5141.32predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK73398.11.600e-4742.81hypothetical protein THAOC_04981 [Thalassiosira oc... [more]
XP_002290068.16.000e-4735.77predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK73397.12.600e-4240.55hypothetical protein THAOC_04980 [Thalassiosira oc... [more]
OEU23671.11.200e-3437.13hypothetical protein FRACYDRAFT_177647 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004417NSK004417Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00850.1NO19G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100139g15gene6866Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00850.1NO19G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00850 ID=NO19G00850|Name=NO19G00850|organism=Nannochloropsis oceanica|type=gene|length=1781bp
AACCACAGGCACAAGATGGCACTAGTCAAGATCTGCCTGCTAGCCGGCCT
CGTAGCGCCTTTGTCCCTTGTCCAGGGCTTTCACAAACCCATTCCGCGCT
TCACCGTCCCGCACCGCCCTTACCACAATCACCGCCCCGTCTCCTTCTCC
TCCTCAAGCCTCTCTCAAGTCCCTCCTCCTAAACCATCCGCTTCAGTATA
TTCAAGCCGCCCTGCTACCTCTCTCCTCAGCCTCCAGGCCTGGCCCCAGA
CCCGCGACCCCAAACCCGCCCCAGCCGACTACCCACTGGCCGCCGCCCGC
ATCTCCATTACCGTCATCGCCTGTCTTCTGACCTCATACGCCCACTCCTC
CACCGATGCAATCTGCTCCAGCCCCGTCTTGGCCAGCGCAGCTGTCACAC
TTGCTGGTTCGCTCATCAGTCCAGGCCTGGGCCAAGCCGCCATGTGTGGC
TCTTTTGCAGGCATGTCTTCTTCGCTTCTCCTCCCCACCTTTTCCTGGAC
CCTGTTGACGGGACTGGTGACATCTGTGTTGTTCGAGGCCTTCATTCACT
ATCGCAATGCGGCATTGGGCTTGGGGGGCCGGCTTGGCACCATTGCATTC
GTATCTGTGAATTTCGTGTCGGCCCTTCGTGGGATTTGGGTGCTTCCTGC
CCTTCCTTCTTCCCTTCCACCCCTTCCTACCCTTTCTACTTTTGCAGCCT
CAATTGCAGCCTTCCCTGACGTTTCCGTAGCAACACTGGCGTCATTGAAG
ACGTTTGTGGCATCCTCGCCGTATCTCCCCCTGACCATGGGGTACGGTGT
TGTGGGGGCCCTTGCAACTATTGCCCTTCGAGAAGCCTCAGATGATAGTG
CCGCGGCAGACCCTGTACGTGCAGCAGCTGTAGTTGGTTTGTTGAGTGCA
CTGATGGTAGGCGTGGGAGGACACACGAGCCTGGGGGCGCTGGCTGCTTA
TGGAGGAGCGTTTGTAGGCATGTCTTTACCTTCGCGGTTAATGTACGGGT
CACAACCGCCTCTTCCCGGCTCTTCACCCTCGGATGCTGCGCCTCTTACC
AGGCCGACGACCCCACGAAACGTCTTGACGAATTTTGCCATTGCTGGTTT
GTTGGGCGGATTGGTACACGGCCTAACCCTTCATTGGGGGATGTGGACGA
CGCCGGTCGCGGCATGGGGCGGAAAGGCGGGTTTTTGTGCGTTTGTGGGC
GTGTTGCTTCACCGGGGAATGCTGCGTGGATTGGATGGTTTGGAAAAGCT
GGGGAGGAAATTGATGCGGTCGGTTGCTGGGAAGGAGAAGTAGAAAACGT
AGTGGAAGAGGTCGAGGTGACTATTTCAAGAATGAGGATGTATGTCTGGA
CGGTGGTGCCGATGAGAGGATGGTTGTAAAAATGTGAGAGGACGAGGATG
GAATGATGAGTTTCCTGCTCTTGCTGTCGCTGCTGCTGCTGCTGCCGCTG
CGGCCGCTGCTGTCGCTGCTGCTGCGTGGGCGACTTGTTTGTCTGCTGAT
GGGGGAAATGGAGGGGTTAGGGATAAATTGGGACGATGAAGGGAAGGGAC
GGGTTACAGTCAAATGGTGTGTACGCAAAGGATAGGGCGGAGGAAAATTA
TCTTTGACGTATGTTTTAATATGAAAGGTTAAAAAAAAAAAAATACAGAA
AAAAGTGTCGCTAGGAGAGGTTTGGTGGAGGCAGCCAGCGGCGGCTGCTC
CCAGGCCCTCAATAGCTTGCACATATGCGGAGTACTCTCACAGTAAGAAG
AAAGAAAAAGAAAACAATTTTGTCCGGAGAT
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protein sequence of NO19G00850.1

>NO19G00850.1-protein ID=NO19G00850.1-protein|Name=NO19G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MALVKICLLAGLVAPLSLVQGFHKPIPRFTVPHRPYHNHRPVSFSSSSLS
QVPPPKPSASVYSSRPATSLLSLQAWPQTRDPKPAPADYPLAAARISITV
IACLLTSYAHSSTDAICSSPVLASAAVTLAGSLISPGLGQAAMCGSFAGM
SSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNF
VSALRGIWVLPALPSSLPPLPTLSTFAASIAAFPDVSVATLASLKTFVAS
SPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGV
GGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTP
RNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHR
GMLRGLDGLEKLGRKLMRSVAGKEK*
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Synonyms
Publications