NO19G00850.1, NO19G00850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00850.1
Unique NameNO19G00850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1781
Alignment locationchr19:290947..292727 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:290947..292727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00850.1 vs.
Match: EWM23587.1 (hypothetical protein Naga_100139g15 [Nannochloropsis gaditana])

HSP 1 Score: 401.4 bits (1030), Expect = 3.600e-108
Identity = 242/406 (59.61%), Postives = 293/406 (72.17%), Query Frame = 0 
Query:   24 KPIPRFTVPHRPYHNHRPVSFSSSSLSQVPPPKPSASVYSSRPATSLL-SLQAWPQTRDPKPAPADYPLAAARISITVIACLLTSYAHSSTDAICSSPVLASAAVTLAGSLISPGLGQAAMCGSFAGMSSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNFVSALRGIWVLPALPSSLPPLPTLSTFAASIAAFPDVSVATLASLKTFVASSPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGVGGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSD-------AAPLTRPTTPRNVLT------NFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHRGMLRGLDGLEKLGRK 416
            KP+       RP H H P   S      + PP+P +S  S+ P++SLL    AWPQTRDP P P DYPLAAAR+ ITV+ACLLTSY+H+S  A+C+SPVLASAAVTLA SLI+PGLGQAAMCGSFAGMSS LLLP+F+ TL TG+ TS+LFEAFIHYRNAALGLGGRLG  AF++VN ++A +  +V+PA         + S F+ S    P     +L +L  F+ +SPYLPLT+ YG +G++ATIALREASDD+AAADPVRAAAVVGL+SAL VGV GHTSLG+LAAYGGAFVGMSLPSRL+YG++P LP  SP         AA +  P+ P + LT      +F++AG LGG VHGLTLH G WT PVA WGGKAG C+FVGVL+ RG+LR   GL+    K
Sbjct:   56 KPLSSRPTLARPSH-HMP---SPGICRNLHPPRPFSS--STAPSSSLLLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPA---------SSSPFSFS---SPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNAWTK 443
The following BLAST results are available for this feature:
BLAST of NO19G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23587.13.600e-10859.61hypothetical protein Naga_100139g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00850NO19G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00850.1NO19G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00850.1.cds1NO19G00850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00850.1 ID=NO19G00850.1|Name=NO19G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
AACCACAGGCACAAGATGGCACTAGTCAAGATCTGCCTGCTAGCCGGCCT
CGTAGCGCCTTTGTCCCTTGTCCAGGGCTTTCACAAACCCATTCCGCGCT
TCACCGTCCCGCACCGCCCTTACCACAATCACCGCCCCGTCTCCTTCTCC
TCCTCAAGCCTCTCTCAAGTCCCTCCTCCTAAACCATCCGCTTCAGTATA
TTCAAGCCGCCCTGCTACCTCTCTCCTCAGCCTCCAGGCCTGGCCCCAGA
CCCGCGACCCCAAACCCGCCCCAGCCGACTACCCACTGGCCGCCGCCCGC
ATCTCCATTACCGTCATCGCCTGTCTTCTGACCTCATACGCCCACTCCTC
CACCGATGCAATCTGCTCCAGCCCCGTCTTGGCCAGCGCAGCTGTCACAC
TTGCTGGTTCGCTCATCAGTCCAGGCCTGGGCCAAGCCGCCATGTGTGGC
TCTTTTGCAGGCATGTCTTCTTCGCTTCTCCTCCCCACCTTTTCCTGGAC
CCTGTTGACGGGACTGGTGACATCTGTGTTGTTCGAGGCCTTCATTCACT
ATCGCAATGCGGCATTGGGCTTGGGGGGCCGGCTTGGCACCATTGCATTC
GTATCTGTGAATTTCGTGTCGGCCCTTCGTGGGATTTGGGTGCTTCCTGC
CCTTCCTTCTTCCCTTCCACCCCTTCCTACCCTTTCTACTTTTGCAGCCT
CAATTGCAGCCTTCCCTGACGTTTCCGTAGCAACACTGGCGTCATTGAAG
ACGTTTGTGGCATCCTCGCCGTATCTCCCCCTGACCATGGGGTACGGTGT
TGTGGGGGCCCTTGCAACTATTGCCCTTCGAGAAGCCTCAGATGATAGTG
CCGCGGCAGACCCTGTACGTGCAGCAGCTGTAGTTGGTTTGTTGAGTGCA
CTGATGGTAGGCGTGGGAGGACACACGAGCCTGGGGGCGCTGGCTGCTTA
TGGAGGAGCGTTTGTAGGCATGTCTTTACCTTCGCGGTTAATGTACGGGT
CACAACCGCCTCTTCCCGGCTCTTCACCCTCGGATGCTGCGCCTCTTACC
AGGCCGACGACCCCACGAAACGTCTTGACGAATTTTGCCATTGCTGGTTT
GTTGGGCGGATTGGTACACGGCCTAACCCTTCATTGGGGGATGTGGACGA
CGCCGGTCGCGGCATGGGGCGGAAAGGCGGGTTTTTGTGCGTTTGTGGGC
GTGTTGCTTCACCGGGGAATGCTGCGTGGATTGGATGGTTTGGAAAAGCT
GGGGAGGAAATTGATGCGGTCGGTTGCTGGGAAGGAGAAGTAGAAAACGT
AGTGGAAGAGGTCGAGGTGACTATTTCAAGAATGAGGATGTATGTCTGGA
CGGTGGTGCCGATGAGAGGATGGTTGTAAAAATGTGAGAGGACGAGGATG
GAATGATGAGTTTCCTGCTCTTGCTGTCGCTGCTGCTGCTGCTGCCGCTG
CGGCCGCTGCTGTCGCTGCTGCTGCGTGGGCGACTTGTTTGTCTGCTGAT
GGGGGAAATGGAGGGGTTAGGGATAAATTGGGACGATGAAGGGAAGGGAC
GGGTTACAGTCAAATGGTGTGTACGCAAAGGATAGGGCGGAGGAAAATTA
TCTTTGACGTATGTTTTAATATGAAAGGTTAAAAAAAAAAAAATACAGAA
AAAAGTGTCGCTAGGAGAGGTTTGGTGGAGGCAGCCAGCGGCGGCTGCTC
CCAGGCCCTCAATAGCTTGCACATATGCGGAGTACTCTCACAGTAAGAAG
AAAGAAAAAGAAAACAATTTTGTCCGGAGAT
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protein sequence of NO19G00850.1

>NO19G00850.1-protein ID=NO19G00850.1-protein|Name=NO19G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MALVKICLLAGLVAPLSLVQGFHKPIPRFTVPHRPYHNHRPVSFSSSSLS
QVPPPKPSASVYSSRPATSLLSLQAWPQTRDPKPAPADYPLAAARISITV
IACLLTSYAHSSTDAICSSPVLASAAVTLAGSLISPGLGQAAMCGSFAGM
SSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNF
VSALRGIWVLPALPSSLPPLPTLSTFAASIAAFPDVSVATLASLKTFVAS
SPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGV
GGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTP
RNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHR
GMLRGLDGLEKLGRKLMRSVAGKEK*
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mRNA from alignment at chr19:290947..292727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00850.1 ID=NO19G00850.1|Name=NO19G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp|location=Sequence derived from alignment at chr19:290947..292727+ (Nannochloropsis oceanica)
AACCACAGGCACAAGATGGCACTAGTCAAGATCTGCCTGCTAGCCGGCCT
CGTAGCGCCTTTGTCCCTTGTCCAGGGCTTTCACAAACCCATTCCGCGCT
TCACCGTCCCGCACCGCCCTTACCACAATCACCGCCCCGTCTCCTTCTCC
TCCTCAAGCCTCTCTCAAGTCCCTCCTCCTAAACCATCCGCTTCAGTATA
TTCAAGCCGCCCTGCTACCTCTCTCCTCAGCCTCCAGGCCTGGCCCCAGA
CCCGCGACCCCAAACCCGCCCCAGCCGACTACCCACTGGCCGCCGCCCGC
ATCTCCATTACCGTCATCGCCTGTCTTCTGACCTCATACGCCCACTCCTC
CACCGATGCAATCTGCTCCAGCCCCGTCTTGGCCAGCGCAGCTGTCACAC
TTGCTGGTTCGCTCATCAGTCCAGGCCTGGGCCAAGCCGCCATGTGTGGC
TCTTTTGCAGGCATGTCTTCTTCGCTTCTCCTCCCCACCTTTTCCTGGAC
CCTGTTGACGGGACTGGTGACATCTGTGTTGTTCGAGGCCTTCATTCACT
ATCGCAATGCGGCATTGGGCTTGGGGGGCCGGCTTGGCACCATTGCATTC
GTATCTGTGAATTTCGTGTCGGCCCTTCGTGGGATTTGGGTGCTTCCTGC
CCTTCCTTCTTCCCTTCCACCCCTTCCTACCCTTTCTACTTTTGCAGCCT
CAATTGCAGCCTTCCCTGACGTTTCCGTAGCAACACTGGCGTCATTGAAG
ACGTTTGTGGCATCCTCGCCGTATCTCCCCCTGACCATGGGGTACGGTGT
TGTGGGGGCCCTTGCAACTATTGCCCTTCGAGAAGCCTCAGATGATAGTG
CCGCGGCAGACCCTGTACGTGCAGCAGCTGTAGTTGGTTTGTTGAGTGCA
CTGATGGTAGGCGTGGGAGGACACACGAGCCTGGGGGCGCTGGCTGCTTA
TGGAGGAGCGTTTGTAGGCATGTCTTTACCTTCGCGGTTAATGTACGGGT
CACAACCGCCTCTTCCCGGCTCTTCACCCTCGGATGCTGCGCCTCTTACC
AGGCCGACGACCCCACGAAACGTCTTGACGAATTTTGCCATTGCTGGTTT
GTTGGGCGGATTGGTACACGGCCTAACCCTTCATTGGGGGATGTGGACGA
CGCCGGTCGCGGCATGGGGCGGAAAGGCGGGTTTTTGTGCGTTTGTGGGC
GTGTTGCTTCACCGGGGAATGCTGCGTGGATTGGATGGTTTGGAAAAGCT
GGGGAGGAAATTGATGCGGTCGGTTGCTGGGAAGGAGAAGTAGAAAACGT
AGTGGAAGAGGTCGAGGTGACTATTTCAAGAATGAGGATGTATGTCTGGA
CGGTGGTGCCGATGAGAGGATGGTTGTAAAAATGTGAGAGGACGAGGATG
GAATGATGAGTTTCCTGCTCTTGCTGTCGCTGCTGCTGCTGCTGCCGCTG
CGGCCGCTGCTGTCGCTGCTGCTGCGTGGGCGACTTGTTTGTCTGCTGAT
GGGGGAAATGGAGGGGTTAGGGATAAATTGGGACGATGAAGGGAAGGGAC
GGGTTACAGTCAAATGGTGTGTACGCAAAGGATAGGGCGGAGGAAAATTA
TCTTTGACGTATGTTTTAATATGAAAGGTTAAAAAAAAAAAAATACAGAA
AAAAGTGTCGCTAGGAGAGGTTTGGTGGAGGCAGCCAGCGGCGGCTGCTC
CCAGGCCCTCAATAGCTTGCACATATGCGGAGTACTCTCACAGTAAGAAG
AAAGAAAAAGAAAACAATTTTGTCCGGAGAT
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Coding sequence (CDS) from alignment at chr19:290947..292727+

>NO19G00850.1 ID=NO19G00850.1|Name=NO19G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr19:290947..292727+ (Nannochloropsis oceanica)
ATGGCACTAGTCAAGATCTGCCTGCTAGCCGGCCTCGTAGCGCCTTTGTC
CCTTGTCCAGGGCTTTCACAAACCCATTCCGCGCTTCACCGTCCCGCACC
GCCCTTACCACAATCACCGCCCCGTCTCCTTCTCCTCCTCAAGCCTCTCT
CAAGTCCCTCCTCCTAAACCATCCGCTTCAGTATATTCAAGCCGCCCTGC
TACCTCTCTCCTCAGCCTCCAGGCCTGGCCCCAGACCCGCGACCCCAAAC
CCGCCCCAGCCGACTACCCACTGGCCGCCGCCCGCATCTCCATTACCGTC
ATCGCCTGTCTTCTGACCTCATACGCCCACTCCTCCACCGATGCAATCTG
CTCCAGCCCCGTCTTGGCCAGCGCAGCTGTCACACTTGCTGGTTCGCTCA
TCAGTCCAGGCCTGGGCCAAGCCGCCATGTGTGGCTCTTTTGCAGGCATG
TCTTCTTCGCTTCTCCTCCCCACCTTTTCCTGGACCCTGTTGACGGGACT
GGTGACATCTGTGTTGTTCGAGGCCTTCATTCACTATCGCAATGCGGCAT
TGGGCTTGGGGGGCCGGCTTGGCACCATTGCATTCGTATCTGTGAATTTC
GTGTCGGCCCTTCGTGGGATTTGGGTGCTTCCTGCCCTTCCTTCTTCCCT
TCCACCCCTTCCTACCCTTTCTACTTTTGCAGCCTCAATTGCAGCCTTCC
CTGACGTTTCCGTAGCAACACTGGCGTCATTGAAGACGTTTGTGGCATCC
TCGCCGTATCTCCCCCTGACCATGGGGTACGGTGTTGTGGGGGCCCTTGC
AACTATTGCCCTTCGAGAAGCCTCAGATGATAGTGCCGCGGCAGACCCTG
TACGTGCAGCAGCTGTAGTTGGTTTGTTGAGTGCACTGATGGTAGGCGTG
GGAGGACACACGAGCCTGGGGGCGCTGGCTGCTTATGGAGGAGCGTTTGT
AGGCATGTCTTTACCTTCGCGGTTAATGTACGGGTCACAACCGCCTCTTC
CCGGCTCTTCACCCTCGGATGCTGCGCCTCTTACCAGGCCGACGACCCCA
CGAAACGTCTTGACGAATTTTGCCATTGCTGGTTTGTTGGGCGGATTGGT
ACACGGCCTAACCCTTCATTGGGGGATGTGGACGACGCCGGTCGCGGCAT
GGGGCGGAAAGGCGGGTTTTTGTGCGTTTGTGGGCGTGTTGCTTCACCGG
GGAATGCTGCGTGGATTGGATGGTTTGGAAAAGCTGGGGAGGAAATTGAT
GCGGTCGGTTGCTGGGAAGGAGAAGTAG
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Synonyms
Publications