NO19G00840, NO19G00840 (gene) Nannochloropsis oceanica

Overview
NameNO19G00840
Unique NameNO19G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1226
Alignment locationchr19:289597..290822 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:289597..290822 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO19G00840 vs. NCBI_GenBank
Match: EWM23589.1 (hypothetical protein Naga_100139g16 [Nannochloropsis gaditana])

HSP 1 Score: 184.1 bits (466), Expect = 4.300e-43
Identity = 102/168 (60.71%), Postives = 117/168 (69.64%), Query Frame = 0 
Query:   39 PQLFLLLLVTFLSVATAFVPTTPRSSFSSSFAS-LTAKPSSTRLHLWGG--KKKAVETPAAAXXXXXXXXXXXXXXXXXSKRATPMKYGQNTVVEKNEDVIVPATEYFANKNDPIVPIIFAGLFIPIFGLLGWWLYGPQPEVVGVDPDQKTSYDMYMKDSNKMKSRKF 204
            P   LLL++  L  ATAFVP+ PRS   +  +S +T+ P  TRLHLWGG  KK A   P A                   KRATPMKYGQNT+V+K+EDVIVPATEYFANK D IVPI+FAGLF+PIFGLLGWWLYGPQPE     PD+KTSYD+Y KDSNK+KSRKF
Sbjct:    5 PTSVLLLVLIALGAATAFVPSMPRSITVAPHSSHVTSSP--TRLHLWGGGKKKDAGSNPTAG------KNKGTQTGAGQKKRATPMKYGQNTLVDKDEDVIVPATEYFANKKDVIVPILFAGLFVPIFGLLGWWLYGPQPEPQIASPDEKTSYDVYFKDSNKIKSRKF 164
The following BLAST results are available for this feature:
BLAST of NO19G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23589.14.300e-4360.71hypothetical protein Naga_100139g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004416NSK004416Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00840.1NO19G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598897gene_7475Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100139g16gene6867Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00840.1NO19G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00840 ID=NO19G00840|Name=NO19G00840|organism=Nannochloropsis oceanica|type=gene|length=1226bp
CAGCTGGATCGTGTTCATGCGTCATATTCCCATCATGCCTGTGTACGCTC
AGTGCGCATCACAGCCTACCCATCACAACTCACAAACACATGCCAAAATC
TGCCAGCGCCGAGATTTCCTCAAGGTGGTGGCGGTGGGGGTGGACCGCCC
AACCCCGATCGATTGTATGCCACCTCTTTGTCAACCCCTCAATCCCTTGC
TCTCCGGTGTCAAAACCCGAAGATCAAGAAGTGACGTGTACATGACGCAG
TGACCACCCACACCAATCTCGGCAGCCTCACAAGCCATGCTCCTCCACCT
GAATTATCCCTATTTATCTAGTAAAGAAAGACAAAGCGCTCTGCAAAACA
TGACGGCCGCAACAAAGTGCTTTCGTTGCCTCGAGAAGCATGCCATCATG
CCCACGCAATGATGCTTCAGCTCCACTCCGTACACATCATTCAAACACAC
CTTCTCTTCAAACACAGATACAAGCAACAGGCACCTAAGAAACACAGCTT
CCCTGGACAAAAGATGAGCGGTCCCCAGCTATTCCTCCTTCTCCTGGTCA
CTTTCCTAAGCGTCGCCACTGCCTTTGTCCCCACCACTCCTCGCTCCTCC
TTCTCTTCCTCCTTCGCTTCCCTCACCGCTAAGCCCTCCTCCACTCGCCT
CCATCTCTGGGGTGGCAAGAAGAAGGCCGTCGAGACACCCGCAGCCGCAC
CAGTAGCTGCCAAAGGCGGCAGGAAGGGCGCTCCCCCTTCTCGACCTGCC
TCAAAAAGGGCGACTCCCATGAAATACGGTCAGAACACGGTGGTTGAGAA
AAACGAAGACGTCATTGTCCCTGCCACCGAGTATTTCGCCAATAAAAACG
ATCCGATAGTGCCGATTATCTTTGCTGGTTTGTTCATTCCTATTTTCGGG
TTGCTGGGATGGTGGTTGTATGGACCGCAGCCGGAGGTTGTGGGGGTGGA
CCCGGATCAGAAGACTTCTTATGACATGTATATGAAGGACTCAAATAAGA
TGAAGAGTCGCAAGTTTTAATCGGGAGGCTGCTAGAGAGGGGAGTTGCTC
GGAGGAAGATTGGAGGAATGAGGGGGGAAGGAAGGGTAGAAGAGAGCGAG
GGAAGAATTAAGGGCAAAGGAATTTTACAGAAGGAAAGAAGCTTGACTGG
ATGAGTAAACCGGATATAAGTGCGCCGAGTATGGTGAAGCATTCTCGAAG
AACAATTAGATTTATGTAGGGTGCTA
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protein sequence of NO19G00840.1

>NO19G00840.1-protein ID=NO19G00840.1-protein|Name=NO19G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MMLQLHSVHIIQTHLLFKHRYKQQAPKKHSFPGQKMSGPQLFLLLLVTFL
SVATAFVPTTPRSSFSSSFASLTAKPSSTRLHLWGGKKKAVETPAAAPVA
AKGGRKGAPPSRPASKRATPMKYGQNTVVEKNEDVIVPATEYFANKNDPI
VPIIFAGLFIPIFGLLGWWLYGPQPEVVGVDPDQKTSYDMYMKDSNKMKS
RKF*
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Synonyms
Publications