NO19G00840.1, NO19G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00840.1
Unique NameNO19G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1226
Alignment locationchr19:289597..290822 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:289597..290822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00840.1 vs.
Match: EWM23589.1 (hypothetical protein Naga_100139g16 [Nannochloropsis gaditana])

HSP 1 Score: 186.4 bits (472), Expect = 8.700e-44
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 0 
Query:   39 PQLFLLLLVTFLSVATAFVPTTPRSSFSSSFAS-LTAKPSSTRLHLWGGKKKAVETPAAAPVAAKGGRKGAPPSRPASKRATPMKYGQNTVVEKNEDVIVPATEYFANKNDPIVPIIFAGLFIPIFGLLGWWLYGPQPEVVGVDPDQKTSYDMYMKDSNKMKSRKF 204
            P   LLL++  L  ATAFVP+ PRS   +  +S +T+ P  TRLHLWGG KK  +   + P A K   KG        KRATPMKYGQNT+V+K+EDVIVPATEYFANK D IVPI+FAGLF+PIFGLLGWWLYGPQPE     PD+KTSYD+Y KDSNK+KSRKF
Sbjct:    5 PTSVLLLVLIALGAATAFVPSMPRSITVAPHSSHVTSSP--TRLHLWGGGKK--KDAGSNPTAGKN--KGTQTGAGQKKRATPMKYGQNTLVDKDEDVIVPATEYFANKKDVIVPILFAGLFVPIFGLLGWWLYGPQPEPQIASPDEKTSYDVYFKDSNKIKSRKF 164
The following BLAST results are available for this feature:
BLAST of NO19G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23589.18.700e-4462.65hypothetical protein Naga_100139g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00840NO19G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00840.1NO19G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00840.1.cds1NO19G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00840.1 ID=NO19G00840.1|Name=NO19G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp
CAGCTGGATCGTGTTCATGCGTCATATTCCCATCATGCCTGTGTACGCTC
AGTGCGCATCACAGCCTACCCATCACAACTCACAAACACATGCCAAAATC
TGCCAGCGCCGAGATTTCCTCAAGGTGGTGGCGGTGGGGGTGGACCGCCC
AACCCCGATCGATTGTATGCCACCTCTTTGTCAACCCCTCAATCCCTTGC
TCTCCGGTGTCAAAACCCGAAGATCAAGAAGTGACGTGTACATGACGCAG
TGACCACCCACACCAATCTCGGCAGCCTCACAAGCCATGCTCCTCCACCT
GAATTATCCCTATTTATCTAGTAAAGAAAGACAAAGCGCTCTGCAAAACA
TGACGGCCGCAACAAAGTGCTTTCGTTGCCTCGAGAAGCATGCCATCATG
CCCACGCAATGATGCTTCAGCTCCACTCCGTACACATCATTCAAACACAC
CTTCTCTTCAAACACAGATACAAGCAACAGGCACCTAAGAAACACAGCTT
CCCTGGACAAAAGATGAGCGGTCCCCAGCTATTCCTCCTTCTCCTGGTCA
CTTTCCTAAGCGTCGCCACTGCCTTTGTCCCCACCACTCCTCGCTCCTCC
TTCTCTTCCTCCTTCGCTTCCCTCACCGCTAAGCCCTCCTCCACTCGCCT
CCATCTCTGGGGTGGCAAGAAGAAGGCCGTCGAGACACCCGCAGCCGCAC
CAGTAGCTGCCAAAGGCGGCAGGAAGGGCGCTCCCCCTTCTCGACCTGCC
TCAAAAAGGGCGACTCCCATGAAATACGGTCAGAACACGGTGGTTGAGAA
AAACGAAGACGTCATTGTCCCTGCCACCGAGTATTTCGCCAATAAAAACG
ATCCGATAGTGCCGATTATCTTTGCTGGTTTGTTCATTCCTATTTTCGGG
TTGCTGGGATGGTGGTTGTATGGACCGCAGCCGGAGGTTGTGGGGGTGGA
CCCGGATCAGAAGACTTCTTATGACATGTATATGAAGGACTCAAATAAGA
TGAAGAGTCGCAAGTTTTAATCGGGAGGCTGCTAGAGAGGGGAGTTGCTC
GGAGGAAGATTGGAGGAATGAGGGGGGAAGGAAGGGTAGAAGAGAGCGAG
GGAAGAATTAAGGGCAAAGGAATTTTACAGAAGGAAAGAAGCTTGACTGG
ATGAGTAAACCGGATATAAGTGCGCCGAGTATGGTGAAGCATTCTCGAAG
AACAATTAGATTTATGTAGGGTGCTA
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protein sequence of NO19G00840.1

>NO19G00840.1-protein ID=NO19G00840.1-protein|Name=NO19G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MMLQLHSVHIIQTHLLFKHRYKQQAPKKHSFPGQKMSGPQLFLLLLVTFL
SVATAFVPTTPRSSFSSSFASLTAKPSSTRLHLWGGKKKAVETPAAAPVA
AKGGRKGAPPSRPASKRATPMKYGQNTVVEKNEDVIVPATEYFANKNDPI
VPIIFAGLFIPIFGLLGWWLYGPQPEVVGVDPDQKTSYDMYMKDSNKMKS
RKF*
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mRNA from alignment at chr19:289597..290822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00840.1 ID=NO19G00840.1|Name=NO19G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at chr19:289597..290822- (Nannochloropsis oceanica)
CAGCTGGATCGTGTTCATGCGTCATATTCCCATCATGCCTGTGTACGCTC
AGTGCGCATCACAGCCTACCCATCACAACTCACAAACACATGCCAAAATC
TGCCAGCGCCGAGATTTCCTCAAGGTGGTGGCGGTGGGGGTGGACCGCCC
AACCCCGATCGATTGTATGCCACCTCTTTGTCAACCCCTCAATCCCTTGC
TCTCCGGTGTCAAAACCCGAAGATCAAGAAGTGACGTGTACATGACGCAG
TGACCACCCACACCAATCTCGGCAGCCTCACAAGCCATGCTCCTCCACCT
GAATTATCCCTATTTATCTAGTAAAGAAAGACAAAGCGCTCTGCAAAACA
TGACGGCCGCAACAAAGTGCTTTCGTTGCCTCGAGAAGCATGCCATCATG
CCCACGCAATGATGCTTCAGCTCCACTCCGTACACATCATTCAAACACAC
CTTCTCTTCAAACACAGATACAAGCAACAGGCACCTAAGAAACACAGCTT
CCCTGGACAAAAGATGAGCGGTCCCCAGCTATTCCTCCTTCTCCTGGTCA
CTTTCCTAAGCGTCGCCACTGCCTTTGTCCCCACCACTCCTCGCTCCTCC
TTCTCTTCCTCCTTCGCTTCCCTCACCGCTAAGCCCTCCTCCACTCGCCT
CCATCTCTGGGGTGGCAAGAAGAAGGCCGTCGAGACACCCGCAGCCGCAC
CAGTAGCTGCCAAAGGCGGCAGGAAGGGCGCTCCCCCTTCTCGACCTGCC
TCAAAAAGGGCGACTCCCATGAAATACGGTCAGAACACGGTGGTTGAGAA
AAACGAAGACGTCATTGTCCCTGCCACCGAGTATTTCGCCAATAAAAACG
ATCCGATAGTGCCGATTATCTTTGCTGGTTTGTTCATTCCTATTTTCGGG
TTGCTGGGATGGTGGTTGTATGGACCGCAGCCGGAGGTTGTGGGGGTGGA
CCCGGATCAGAAGACTTCTTATGACATGTATATGAAGGACTCAAATAAGA
TGAAGAGTCGCAAGTTTTAATCGGGAGGCTGCTAGAGAGGGGAGTTGCTC
GGAGGAAGATTGGAGGAATGAGGGGGGAAGGAAGGGTAGAAGAGAGCGAG
GGAAGAATTAAGGGCAAAGGAATTTTACAGAAGGAAAGAAGCTTGACTGG
ATGAGTAAACCGGATATAAGTGCGCCGAGTATGGTGAAGCATTCTCGAAG
AACAATTAGATTTATGTAGGGTGCTA
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Coding sequence (CDS) from alignment at chr19:289597..290822-

>NO19G00840.1 ID=NO19G00840.1|Name=NO19G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr19:289597..290822- (Nannochloropsis oceanica)
ATGATGCTTCAGCTCCACTCCGTACACATCATTCAAACACACCTTCTCTT
CAAACACAGATACAAGCAACAGGCACCTAAGAAACACAGCTTCCCTGGAC
AAAAGATGAGCGGTCCCCAGCTATTCCTCCTTCTCCTGGTCACTTTCCTA
AGCGTCGCCACTGCCTTTGTCCCCACCACTCCTCGCTCCTCCTTCTCTTC
CTCCTTCGCTTCCCTCACCGCTAAGCCCTCCTCCACTCGCCTCCATCTCT
GGGGTGGCAAGAAGAAGGCCGTCGAGACACCCGCAGCCGCACCAGTAGCT
GCCAAAGGCGGCAGGAAGGGCGCTCCCCCTTCTCGACCTGCCTCAAAAAG
GGCGACTCCCATGAAATACGGTCAGAACACGGTGGTTGAGAAAAACGAAG
ACGTCATTGTCCCTGCCACCGAGTATTTCGCCAATAAAAACGATCCGATA
GTGCCGATTATCTTTGCTGGTTTGTTCATTCCTATTTTCGGGTTGCTGGG
ATGGTGGTTGTATGGACCGCAGCCGGAGGTTGTGGGGGTGGACCCGGATC
AGAAGACTTCTTATGACATGTATATGAAGGACTCAAATAAGATGAAGAGT
CGCAAGTTTTAA
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Synonyms
Publications