NO19G00770, NO19G00770 (gene) Nannochloropsis oceanica

Overview
NameNO19G00770
Unique NameNO19G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr19:266948..268189 +

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Properties
Property NameValue
DescriptionTranscription elongation factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:266948..268189 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007808Elf1
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO19G00770 vs. NCBI_GenBank
Match: EWM23583.1 (transcription elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 5.100e-42
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGE 94
            MGGRKKASKKVAKKKR  LR+VFKCVQCNNDGVVECVIRKE GTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQE+VEGD GE
Sbjct:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGE 93          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: CBJ25475.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2 bits (230), Expect = 4.800e-16
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGEEE 96
            MG RKK++KK+  KK T L  VFKC  CN+D VVEC + K+  T  ++CR+C  ++   +NYL++PIDVY +WIDECE ++      E  + +E+
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQ 95          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: PNS15423.1 (hypothetical protein CAC42_682 [Elsinoe sp. CQ-2017a])

HSP 1 Score: 92.4 bits (228), Expect = 8.200e-16
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGE 84
            MG RK ASK   KKKR GL S F+C+ CN++  V   + K++ TGE+ C+VCG S+   +NYLS PIDVY +WID C+ ++ E
Sbjct:    1 MGKRKSASKPEGKKKREGLASTFQCLFCNHENSVTVKLDKKSSTGELTCKVCGQSYQTGINYLSAPIDVYSDWIDACDAVAKE 83          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: XP_009037251.1 (hypothetical protein AURANDRAFT_9406, partial [Aureococcus anophagefferens] >EGB07874.1 hypothetical protein AURANDRAFT_9406, partial [Aureococcus anophagefferens])

HSP 1 Score: 89.7 bits (221), Expect = 5.300e-15
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECE 79
            MG R+  ++KV KKK+  + + FKC  CN++G VEC I  E  +G + CRVCGAS+   VNYLS+PID++ EWID CE
Sbjct:    1 MGRRRAKAQKVVKKKKPVMLTEFKCPFCNHEGAVECKIDYEKESGSLECRVCGASYSATVNYLSEPIDIFSEWIDHCE 78          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: XP_008603867.1 (hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >XP_012199498.1 hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65] >EQC42444.1 hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >KDO29904.1 hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 89.7 bits (221), Expect = 5.300e-15
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87
            MG RKK++KK+  +K+  +  VFKC  C++D  VEC + ++   G + CRVC  SF   +NYLS+PIDVY +WIDECE +  EQ +
Sbjct:    1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNIGHLSCRVCSESFQTNINYLSEPIDVYTDWIDECEALHNEQAR 86          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: ABK26033.1 (unknown [Picea sitchensis] >ACN40482.1 unknown [Picea sitchensis])

HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERIS 82
            MG RK A K  +KKK+  L +VF C  CN++  VEC + ++   GE  CR+C  SF  ++N LS+P+DVYCEWIDECER++
Sbjct:    1 MGKRKAAKKPESKKKQEKLSTVFSCPFCNHESSVECRMDRKDLIGEASCRICQESFSTSINALSEPVDVYCEWIDECERVN 81          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: OQS05371.1 (hypothetical protein THRCLA_20639 [Thraustotheca clavata])

HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87
            MG RKK++KK+  +K+  +  VFKC  C++D  VEC + ++   G + CRVC  S+   +NYLS+PIDVY +WIDECE +  EQ +
Sbjct:    1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHNEQSR 86          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: PSK56602.1 (hypothetical protein B9Z65_6226 [Elsinoe australis])

HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    2 GGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGE 84
            G RK A+K   KKKR GL S F+C+ CN++  V   + K++ TGE+ C+VCG S+   +NYLS PIDVY +WID C+ ++ E
Sbjct:   13 GKRKSAAKPEGKKKREGLASTFQCLFCNHENSVSVKLDKKSSTGELTCKVCGQSYQTGINYLSAPIDVYSDWIDACDAVAKE 94          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: KFY64502.1 (hypothetical protein V496_03230 [Pseudogymnoascus sp. VKM F-4515 (FW-2607)])

HSP 1 Score: 89.0 bits (219), Expect = 9.100e-15
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87
            MG RKKA+K   KKK   L + F C+ CN++  V   I K+AG G + C+VC  SF C++NYLS P+DVY EW+D C+ ++ E ++
Sbjct:    1 MGKRKKAAKAPTKKKNEPLATTFPCLFCNHEKSVSAKIDKKAGVGHLSCKVCDQSFSCSINYLSLPVDVYSEWVDACDTVAQENKE 86          
BLAST of NO19G00770 vs. NCBI_GenBank
Match: XP_024328595.1 (hypothetical protein VC83_00546 [Pseudogymnoascus destructans] >ELR10457.1 hypothetical protein GMDG_00869 [Pseudogymnoascus destructans 20631-21] >OAF63326.1 hypothetical protein VC83_00546 [Pseudogymnoascus destructans])

HSP 1 Score: 88.6 bits (218), Expect = 1.200e-14
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87
            MG RKKA+K   KKK   L + F C+ CN++  V   I K+AG G + C+VC  SF C++NYLS P+DVY EW+D C+ ++ E ++
Sbjct:    1 MGKRKKAAKAPTKKKNEPLATTFPCLFCNHEKSVTAKIDKKAGVGHLSCKVCDQSFSCSINYLSLPVDVYSEWVDACDTVAQENKE 86          
The following BLAST results are available for this feature:
BLAST of NO19G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23583.15.100e-4293.55transcription elongation factor 1 [Nannochloropsis... [more]
CBJ25475.14.800e-1645.26conserved unknown protein [Ectocarpus siliculosus][more]
PNS15423.18.200e-1650.60hypothetical protein CAC42_682 [Elsinoe sp. CQ-201... [more]
XP_009037251.15.300e-1552.56hypothetical protein AURANDRAFT_9406, partial [Aur... [more]
XP_008603867.15.300e-1547.67hypothetical protein SDRG_00179 [Saprolegnia dicli... [more]
ABK26033.16.900e-1550.62unknown [Picea sitchensis] >ACN40482.1 unknown [Pi... [more]
OQS05371.16.900e-1546.51hypothetical protein THRCLA_20639 [Thraustotheca c... [more]
PSK56602.16.900e-1548.78hypothetical protein B9Z65_6226 [Elsinoe australis... [more]
KFY64502.19.100e-1546.51hypothetical protein V496_03230 [Pseudogymnoascus ... [more]
XP_024328595.11.200e-1446.51hypothetical protein VC83_00546 [Pseudogymnoascus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004407NSK004407Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00770.1NO19G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598861gene_7466Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100266g2gene6874Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00770.1NO19G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00770 ID=NO19G00770|Name=NO19G00770|organism=Nannochloropsis oceanica|type=gene|length=1242bp
CCTCACACATTCACACGAGACACGCATAGGACCAAGCCAGAGAAAGAGGC
GCACATCAGATCACACGGGCGGGGGCAAGCGATCCACCACTACCACGACA
AGCACAAATAAGCGAACGACCGAGGCAGCAAGAGAAGCGACGCAGTCATG
GGGGGCCGCAAGAAGgtgcgtggtgtggacatgagtatgcggacggggaa
gagaaagagtaagaggaagatgaggaagaggaaaaggagaagagaaagga
gcaaaaatccctctttcaggtatgtactgtactgatcctattcctattgc
tgatactgatccaattcctattgctgatgctcctgcataccactacacac
aaaacctctgtctttctagcgtcaccgcaccctcacttcgaccagcctca
agccctcatgccctctctccgtccctccgtccctcccccctctgtccttc
cccccattccccctttccatccctcccatcctttccaagGCATCTAAAAA
GGTAGCCAAGAAGAAGCGCACGGGTCTCCGCTCGGTATTCAAATGCGTCC
AGTGTAACAACGACGGCGTGGTAGAATGCGTCATgtgcgtagacaaatct
ctccccttctttccctccttcccctcccacctccctccaccctgtcaacc
caccctccataactacactcatttttctcgtttcactaatcacccacttc
tcgaccatcacctttcctcttccctccttttcctctcttctctagACGAA
AAGAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTCTGTGGGGCCTCCTTT
ATTTGCGCAGTCAATTgtacgtgagggagagagagatggaagaaaaagag
ggaaggtgggggaaaacacaaaaaatacctcgcccctctcccatctcccg
ttctccttgccgtctcctatcacatgcaaagccagctcgtcaagtttctc
aatgctctcatacccgtaatattcaatattcatgttaatgacccttttct
ccctccttccaccctcccagATCTGTCAAAGCCCATCGATGTGTACTGTG
AGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGCAGGAGAAGGTGGAG
GGAGATGAGGGGGAGGAGGAGGATGTATAGAAGCGGGGAAGGATGAAGAA
GGAGGGGTATAGATGGTCAGACGTAAAAGAAAGACTTTACACAGGTATGT
GTAGGTTTCCGGATATAAATTTGTTCCCTCGTGTTCCCCCTT
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protein sequence of NO19G00770.1

>NO19G00770.1-protein ID=NO19G00770.1-protein|Name=NO19G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCR
VCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGEEEDV*
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Synonyms
Publications