NO19G00770, NO19G00770 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G00770 vs. NCBI_GenBank
Match: EWM23583.1 (transcription elongation factor 1 [Nannochloropsis gaditana]) HSP 1 Score: 179.5 bits (454), Expect = 5.100e-42 Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGE 94 MGGRKKASKKVAKKKR LR+VFKCVQCNNDGVVECVIRKE GTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQE+VEGD GE Sbjct: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGE 93
BLAST of NO19G00770 vs. NCBI_GenBank
Match: CBJ25475.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 93.2 bits (230), Expect = 4.800e-16 Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGEEE 96 MG RKK++KK+ KK T L VFKC CN+D VVEC + K+ T ++CR+C ++ +NYL++PIDVY +WIDECE ++ E + +E+ Sbjct: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQ 95
BLAST of NO19G00770 vs. NCBI_GenBank
Match: PNS15423.1 (hypothetical protein CAC42_682 [Elsinoe sp. CQ-2017a]) HSP 1 Score: 92.4 bits (228), Expect = 8.200e-16 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGE 84 MG RK ASK KKKR GL S F+C+ CN++ V + K++ TGE+ C+VCG S+ +NYLS PIDVY +WID C+ ++ E Sbjct: 1 MGKRKSASKPEGKKKREGLASTFQCLFCNHENSVTVKLDKKSSTGELTCKVCGQSYQTGINYLSAPIDVYSDWIDACDAVAKE 83
BLAST of NO19G00770 vs. NCBI_GenBank
Match: XP_009037251.1 (hypothetical protein AURANDRAFT_9406, partial [Aureococcus anophagefferens] >EGB07874.1 hypothetical protein AURANDRAFT_9406, partial [Aureococcus anophagefferens]) HSP 1 Score: 89.7 bits (221), Expect = 5.300e-15 Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECE 79 MG R+ ++KV KKK+ + + FKC CN++G VEC I E +G + CRVCGAS+ VNYLS+PID++ EWID CE Sbjct: 1 MGRRRAKAQKVVKKKKPVMLTEFKCPFCNHEGAVECKIDYEKESGSLECRVCGASYSATVNYLSEPIDIFSEWIDHCE 78
BLAST of NO19G00770 vs. NCBI_GenBank
Match: XP_008603867.1 (hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >XP_012199498.1 hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65] >EQC42444.1 hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >KDO29904.1 hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 89.7 bits (221), Expect = 5.300e-15 Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87 MG RKK++KK+ +K+ + VFKC C++D VEC + ++ G + CRVC SF +NYLS+PIDVY +WIDECE + EQ + Sbjct: 1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNIGHLSCRVCSESFQTNINYLSEPIDVYTDWIDECEALHNEQAR 86
BLAST of NO19G00770 vs. NCBI_GenBank
Match: ABK26033.1 (unknown [Picea sitchensis] >ACN40482.1 unknown [Picea sitchensis]) HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15 Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERIS 82 MG RK A K +KKK+ L +VF C CN++ VEC + ++ GE CR+C SF ++N LS+P+DVYCEWIDECER++ Sbjct: 1 MGKRKAAKKPESKKKQEKLSTVFSCPFCNHESSVECRMDRKDLIGEASCRICQESFSTSINALSEPVDVYCEWIDECERVN 81
BLAST of NO19G00770 vs. NCBI_GenBank
Match: OQS05371.1 (hypothetical protein THRCLA_20639 [Thraustotheca clavata]) HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87 MG RKK++KK+ +K+ + VFKC C++D VEC + ++ G + CRVC S+ +NYLS+PIDVY +WIDECE + EQ + Sbjct: 1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHNEQSR 86
BLAST of NO19G00770 vs. NCBI_GenBank
Match: PSK56602.1 (hypothetical protein B9Z65_6226 [Elsinoe australis]) HSP 1 Score: 89.4 bits (220), Expect = 6.900e-15 Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 0 Query: 2 GGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGE 84 G RK A+K KKKR GL S F+C+ CN++ V + K++ TGE+ C+VCG S+ +NYLS PIDVY +WID C+ ++ E Sbjct: 13 GKRKSAAKPEGKKKREGLASTFQCLFCNHENSVSVKLDKKSSTGELTCKVCGQSYQTGINYLSAPIDVYSDWIDACDAVAKE 94
BLAST of NO19G00770 vs. NCBI_GenBank
Match: KFY64502.1 (hypothetical protein V496_03230 [Pseudogymnoascus sp. VKM F-4515 (FW-2607)]) HSP 1 Score: 89.0 bits (219), Expect = 9.100e-15 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87 MG RKKA+K KKK L + F C+ CN++ V I K+AG G + C+VC SF C++NYLS P+DVY EW+D C+ ++ E ++ Sbjct: 1 MGKRKKAAKAPTKKKNEPLATTFPCLFCNHEKSVSAKIDKKAGVGHLSCKVCDQSFSCSINYLSLPVDVYSEWVDACDTVAQENKE 86
BLAST of NO19G00770 vs. NCBI_GenBank
Match: XP_024328595.1 (hypothetical protein VC83_00546 [Pseudogymnoascus destructans] >ELR10457.1 hypothetical protein GMDG_00869 [Pseudogymnoascus destructans 20631-21] >OAF63326.1 hypothetical protein VC83_00546 [Pseudogymnoascus destructans]) HSP 1 Score: 88.6 bits (218), Expect = 1.200e-14 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0 Query: 1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEK 87 MG RKKA+K KKK L + F C+ CN++ V I K+AG G + C+VC SF C++NYLS P+DVY EW+D C+ ++ E ++ Sbjct: 1 MGKRKKAAKAPTKKKNEPLATTFPCLFCNHEKSVTAKIDKKAGVGHLSCKVCDQSFSCSINYLSLPVDVYSEWVDACDTVAQENKE 86 The following BLAST results are available for this feature:
BLAST of NO19G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G00770 ID=NO19G00770|Name=NO19G00770|organism=Nannochloropsis oceanica|type=gene|length=1242bpback to top protein sequence of NO19G00770.1 >NO19G00770.1-protein ID=NO19G00770.1-protein|Name=NO19G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bpback to top Synonyms
Publications
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