NO19G00770.1, NO19G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00770.1
Unique NameNO19G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length553
Alignment locationchr19:266948..268189 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:266948..268189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00770.1 vs.
Match: EWM23583.1 (transcription elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 5.100e-42
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0 
Query:    1 MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGE 94
            MGGRKKASKKVAKKKR  LR+VFKCVQCNNDGVVECVIRKE GTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQE+VEGD GE
Sbjct:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGE 93
The following BLAST results are available for this feature:
BLAST of NO19G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23583.15.100e-4293.55transcription elongation factor 1 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00770NO19G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00770.1NO19G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00770.1.cds1NO19G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00770.1.cds2NO19G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00770.1.cds3NO19G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00770.1.cds4NO19G00770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00770.1 ID=NO19G00770.1|Name=NO19G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
CCTCACACATTCACACGAGACACGCATAGGACCAAGCCAGAGAAAGAGGC
GCACATCAGATCACACGGGCGGGGGCAAGCGATCCACCACTACCACGACA
AGCACAAATAAGCGAACGACCGAGGCAGCAAGAGAAGCGACGCAGTCATG
GGGGGCCGCAAGAAGGCATCTAAAAAGGTAGCCAAGAAGAAGCGCACGGG
TCTCCGCTCGGTATTCAAATGCGTCCAGTGTAACAACGACGGCGTGGTAG
AATGCGTCATACGAAAAGAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTC
TGTGGGGCCTCCTTTATTTGCGCAGTCAATTATCTGTCAAAGCCCATCGA
TGTGTACTGTGAGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGCAGG
AGAAGGTGGAGGGAGATGAGGGGGAGGAGGAGGATGTATAGAAGCGGGGA
AGGATGAAGAAGGAGGGGTATAGATGGTCAGACGTAAAAGAAAGACTTTA
CACAGGTATGTGTAGGTTTCCGGATATAAATTTGTTCCCTCGTGTTCCCC
CTT
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protein sequence of NO19G00770.1

>NO19G00770.1-protein ID=NO19G00770.1-protein|Name=NO19G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCR
VCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGEEEDV*
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mRNA from alignment at chr19:266948..268189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00770.1 ID=NO19G00770.1|Name=NO19G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at chr19:266948..268189+ (Nannochloropsis oceanica)
CCTCACACATTCACACGAGACACGCATAGGACCAAGCCAGAGAAAGAGGC
GCACATCAGATCACACGGGCGGGGGCAAGCGATCCACCACTACCACGACA
AGCACAAATAAGCGAACGACCGAGGCAGCAAGAGAAGCGACGCAGTCATG
GGGGGCCGCAAGAAGGTGCGTGGTGTGGACATGAGTATGCGGACGGGGAA
GAGAAAGAGTAAGAGGAAGATGAGGAAGAGGAAAAGGAGAAGAGAAAGGA
GCAAAAATCCCTCTTTCAGGTATGTACTGTACTGATCCTATTCCTATTGC
TGATACTGATCCAATTCCTATTGCTGATGCTCCTGCATACCACTACACAC
AAAACCTCTGTCTTTCTAGCGTCACCGCACCCTCACTTCGACCAGCCTCA
AGCCCTCATGCCCTCTCTCCGTCCCTCCGTCCCTCCCCCCTCTGTCCTTC
CCCCCATTCCCCCTTTCCATCCCTCCCATCCTTTCCAAGGCATCTAAAAA
GGTAGCCAAGAAGAAGCGCACGGGTCTCCGCTCGGTATTCAAATGCGTCC
AGTGTAACAACGACGGCGTGGTAGAATGCGTCATGTGCGTAGACAAATCT
CTCCCCTTCTTTCCCTCCTTCCCCTCCCACCTCCCTCCACCCTGTCAACC
CACCCTCCATAACTACACTCATTTTTCTCGTTTCACTAATCACCCACTTC
TCGACCATCACCTTTCCTCTTCCCTCCTTTTCCTCTCTTCTCTAGACGAA
AAGAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTCTGTGGGGCCTCCTTT
ATTTGCGCAGTCAATTGTACGTGAGGGAGAGAGAGATGGAAGAAAAAGAG
GGAAGGTGGGGGAAAACACAAAAAATACCTCGCCCCTCTCCCATCTCCCG
TTCTCCTTGCCGTCTCCTATCACATGCAAAGCCAGCTCGTCAAGTTTCTC
AATGCTCTCATACCCGTAATATTCAATATTCATGTTAATGACCCTTTTCT
CCCTCCTTCCACCCTCCCAGATCTGTCAAAGCCCATCGATGTGTACTGTG
AGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGCAGGAGAAGGTGGAG
GGAGATGAGGGGGAGGAGGAGGATGTATAGAAGCGGGGAAGGATGAAGAA
GGAGGGGTATAGATGGTCAGACGTAAAAGAAAGACTTTACACAGGTATGT
GTAGGTTTCCGGATATAAATTTGTTCCCTCGTGTTCCCCCTT
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Coding sequence (CDS) from alignment at chr19:266948..268189+

>NO19G00770.1 ID=NO19G00770.1|Name=NO19G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at chr19:266948..268189+ (Nannochloropsis oceanica)
ATGGGGGGCCGCAAGAAGGCATCTAAAAAGGTAGCCAAGAAGAAGCGCAC
GGGTCTCCGCTCGGTATTCAAATGCGTCCAGTGTAACAACGACGGCGTGG
TAGAATGCGTCATACGAAAAGAAGCAGGCACGGGCGAGGTGGTGTGTCGG
GTCTGTGGGGCCTCCTTTATTTGCGCAGTCAATTATCTGTCAAAGCCCAT
CGATGTGTACTGTGAGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGC
AGGAGAAGGTGGAGGGAGATGAGGGGGAGGAGGAGGATGTATAG
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Synonyms
Publications