NO19G00750, NO19G00750 (gene) Nannochloropsis oceanica

Overview
NameNO19G00750
Unique NameNO19G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr19:261973..262476 +

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Properties
Property NameValue
DescriptionLa-related protein 4b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:261973..262476 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
Homology
BLAST of NO19G00750 vs. NCBI_GenBank
Match: OQS02535.1 (hypothetical protein THRCLA_05092 [Thraustotheca clavata])

HSP 1 Score: 86.3 bits (212), Expect = 1.000e-13
Identity = 47/128 (36.72%), Postives = 77/128 (60.16%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENV 129
            M++P+ ++     + +L   P  +V A+ D    +L+E+Q++++PNI  ER TIILRE+ S+T   +++     + GC  V  ++ DV +TWFV  A+E +A K L  LR   +    +KARLKSEN+
Sbjct:   45 MYVPIDVILGFAKVKALSEDPAKIVQAIRDSQVCSLNEEQNAIKPNIKSERNTIILREIPSDTAPADVEA---IFKGCGAVTNVRSDVGDTWFVTMASEDEAVKTLLTLRSKTFNNAPIKARLKSENL 169          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_024581421.1 (la-related protein 4 [Plasmopara halstedii] >CEG45052.1 la-related protein 4 [Plasmopara halstedii])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L  +  LLV A+ D    +LS  + +++PNI  ERTTIILRE+ S+T  EE++     +  C +V  ++ DV +TWF+  ++E +A   L  LR     G  +KARLKSEN++
Sbjct:   45 MYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEVEA---IFKDCGKVIGVRSDVGDTWFITMSSEAEAVDTLLALRSKTLNGAAIKARLKSENIL 170          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: CBN76115.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.5 bits (210), Expect = 1.700e-13
Identity = 45/129 (34.88%), Postives = 80/129 (62.02%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M +P+++++    +  L     L+V ++ D     ++ D   ++P+I  ER TIILRE+ S TP+E++++ +F+ DG   +++++ DV +TWFV   +E DA   +  LR   +EG  +KARLKSEN++
Sbjct:  100 MCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSD--GIKPSIKQERNTIILREIPSETPQEKIRE-IFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLL 225          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: ORY05520.1 (hypothetical protein K493DRAFT_36985 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 85.5 bits (210), Expect = 1.700e-13
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            +F+P+S+++ L  + SL     LL+  L +   L +    + V+PN  V+R TI+LR++     EEE+K  +FS DG P VR+   D  NTWFV F TE++    L  +R   ++G  +  R+KSEN++
Sbjct:   80 LFVPISVVAELEVVKSLTTDMDLLMEVLKESSQLTVDPTGTRVKPNFTVQRNTIVLRDIPPEVSEEEIK-GIFSGDGNPAVRSANPDFGNTWFVTFGTEEETLNMLTFIRGRTFQGKPIAGRIKSENIL 207          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: GAX95184.1 (Hypothetical protein PINS_003071 [Pythium insidiosum])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 47/128 (36.72%), Postives = 77/128 (60.16%), Query Frame = 0
Query:    2 FIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            F+ + ++     +  L  S  L+V A+ D   + ++E + +++PNI  ER TII RE+ S T  EE+K     ++GC EV +++ DV +TWFV  ++E+DA + L  LR   +    +KARLKSEN++
Sbjct:   59 FVSVDVILGFAKIKELTDSKDLVVEAIADSKIVIVNESKDAIKPNIKSERNTIIXREIPSATAPEEVKA---IFEGCGEVTSVRSDVGDTWFVTMSSEEDAVQTLLTLRSKTFNNAPIKARLKSENLL 183          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_008606378.1 (hypothetical protein SDRG_02560 [Saprolegnia diclina VS20] >EQC39904.1 hypothetical protein SDRG_02560 [Saprolegnia diclina VS20])

HSP 1 Score: 84.7 bits (208), Expect = 2.900e-13
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENV 129
            MF+P+  +     + +L     LL+ A+ D   + L++++++++PNI  ER TIILRE+ S T   E+ + +F+  GC  V +++ DV +TWFV  ATE++A   L  LR   +    +KARLKSEN+
Sbjct:   45 MFVPIDTILGFAKIKALSDDAALLIDAIKDSQIVVLNDEKNAIKPNIKSERNTIILREIPSATAPAEV-EAIFA--GCGAVTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSENL 169          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_012206161.1 (hypothetical protein SPRG_20878 [Saprolegnia parasitica CBS 223.65] >KDO23189.1 hypothetical protein SPRG_20878 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 84.7 bits (208), Expect = 2.900e-13
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENV 129
            MF+P+  +     + +L     LL+ A+ D   + L++++++++PNI  ER TIILRE+ S T   E+ + +F+  GC  V +++ DV +TWFV  ATE++A   L  LR   +    +KARLKSEN+
Sbjct:   45 MFVPIDTILGFAKIKALSDDAALLIDAIKDSQIVVLNDEKNAIKPNIKSERNTIILREIPSATAPAEV-EAIFA--GCGAVTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSENL 169          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_008872955.1 (hypothetical protein H310_08825 [Aphanomyces invadans] >ETV98758.1 hypothetical protein H310_08825 [Aphanomyces invadans])

HSP 1 Score: 84.3 bits (207), Expect = 3.800e-13
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++     + +L     L+V ++ D    +LS +  +++PNI  ER TIILRE+ S T  ++++     ++GC  V +++ DV +TWFV  ATE+DA   L  LR   +    +KARLKSENV+
Sbjct:   43 MYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEA---IFEGCGTVASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVL 168          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: OQR94367.1 (hypothetical protein ACHHYP_01407 [Achlya hypogyna])

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12
Identity = 46/128 (35.94%), Postives = 79/128 (61.72%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENV 129
            MF+P+ ++     + +L     L+V A+ D    +L++++++++PN+  ER TIILRE+ S T   E+ + +F+  GC  V +++ DV +TWFV  A+E++A   L  LR   +    +KARLKSEN+
Sbjct:   45 MFVPIDVILGFAKVKALSEDAALVVEAIEDSQICSLNDEKNAIKPNVKSERNTIILREIPSATEPAEV-EAIFA--GCGAVTSVRSDVGDTWFVTLASEEEAVNTLLALRNKTFNNAPIKARLKSENL 169          
BLAST of NO19G00750 vs. NCBI_GenBank
Match: CCI48973.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 80.9 bits (198), Expect = 4.200e-12
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = 0
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            MF+P+  + S   +  L   P ++  A+ +     L+E ++++RPN   ER TIILRE+ S+T  +++++ LF+  G  +VR+   DV +TWFV F +EK+A + L  L +   +G  +KARLKSENV+
Sbjct:  248 MFVPIETILSFSKIQKLTQDPSIVADAIRNSKICVLNESENAIRPNAKHERNTIILREIPSDTNVKKVRE-LFTHCGQVDVRS---DVGDTWFVTFQSEKEAIETLLTLCDKQLDGVPIKARLKSENVV 372          
The following BLAST results are available for this feature:
BLAST of NO19G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQS02535.11.000e-1336.72hypothetical protein THRCLA_05092 [Thraustotheca c... [more]
XP_024581421.11.300e-1336.43la-related protein 4 [Plasmopara halstedii] >CEG45... [more]
CBN76115.11.700e-1334.88conserved unknown protein [Ectocarpus siliculosus][more]
ORY05520.11.700e-1336.43hypothetical protein K493DRAFT_36985 [Basidiobolus... [more]
GAX95184.12.200e-1336.72Hypothetical protein PINS_003071 [Pythium insidios... [more]
XP_008606378.12.900e-1337.50hypothetical protein SDRG_02560 [Saprolegnia dicli... [more]
XP_012206161.12.900e-1337.50hypothetical protein SPRG_20878 [Saprolegnia paras... [more]
XP_008872955.13.800e-1336.43hypothetical protein H310_08825 [Aphanomyces invad... [more]
OQR94367.11.100e-1235.94hypothetical protein ACHHYP_01407 [Achlya hypogyna... [more]
CCI48973.14.200e-1237.98unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004401NSK004401Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00750.1NO19G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|156667gene_7465Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100610g1gene6876Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00750.1NO19G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00750 ID=NO19G00750|Name=NO19G00750|organism=Nannochloropsis oceanica|type=gene|length=504bp
ATGTTCATCCCGCTCTCCATCCTCTCCTCCCTGCCATCCCTGGCCTCCCT
CCCCCCCTCTCCCCCCCTCCTTGTCGCCGCCCTCATGGACCATCCCACCC
TTGCCCTGAGCGAGGACCAAAGCAGCGTGCGGCCCAACATCCACGTCGAA
AGAACGACTATCATCCTCCGAGAGGTGAGTAGCAACACGCCTGAGGAGGA
GTTGAAGCAGAAATTGTTTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTT
TGAAGAAGGATGTGGAGAACACGTGGTTCGTCTTGTTTGCGACAGAGAAG
GACGCAAAAAAGGCGCTGGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGG
GGTGGTGAAGGCCCGCCTGAAGAGCGAAAATGTGATCAATAAGGCCTTTT
TTTCGGGAGGGGGAGGAGGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTT
GCCGGCGGAGGAGGGGGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGT
GTAG
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protein sequence of NO19G00750.1

>NO19G00750.1-protein ID=NO19G00750.1-protein|Name=NO19G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVE
RTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEK
DAKKALEKLREMLWEGGVVKARLKSENVINKAFFSGGGGGQGGGREGGRF
AGGGGGGEEEGEEVEEV*
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Synonyms
Publications