NO19G00750.1, NO19G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00750.1
Unique NameNO19G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr19:261973..262476 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:261973..262476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00750.1 vs.
Match: EWM23576.1 (la-related protein 4b, partial [Nannochloropsis gaditana])

HSP 1 Score: 184.1 bits (466), Expect = 3.500e-43
Identity = 99/155 (63.87%), Postives = 123/155 (79.35%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVINKAFFSGGGGGQGGGREGGRFAGGGG 156
            MFIPLS+L +LP+LA+L PS  L+VAAL DHPTL L+E+QSSVRPNIHV RTT+ILRE+SS TPEEE++ +L  W+GCPE+++L+KDV +TWFV    E  AK  LE+LRE LW G  ++ARLKSENV+NKAF +G G G  GG EGGR+A  GG
Sbjct:  156 MFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFLAGEGVGTDGGDEGGRYARQGG 310
The following BLAST results are available for this feature:
BLAST of NO19G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23576.13.500e-4363.87la-related protein 4b, partial [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00750NO19G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00750.1NO19G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00750.1.cds1NO19G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00750.1 ID=NO19G00750.1|Name=NO19G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGTTCATCCCGCTCTCCATCCTCTCCTCCCTGCCATCCCTGGCCTCCCT
CCCCCCCTCTCCCCCCCTCCTTGTCGCCGCCCTCATGGACCATCCCACCC
TTGCCCTGAGCGAGGACCAAAGCAGCGTGCGGCCCAACATCCACGTCGAA
AGAACGACTATCATCCTCCGAGAGGTGAGTAGCAACACGCCTGAGGAGGA
GTTGAAGCAGAAATTGTTTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTT
TGAAGAAGGATGTGGAGAACACGTGGTTCGTCTTGTTTGCGACAGAGAAG
GACGCAAAAAAGGCGCTGGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGG
GGTGGTGAAGGCCCGCCTGAAGAGCGAAAATGTGATCAATAAGGCCTTTT
TTTCGGGAGGGGGAGGAGGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTT
GCCGGCGGAGGAGGGGGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGT
GTAG
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protein sequence of NO19G00750.1

>NO19G00750.1-protein ID=NO19G00750.1-protein|Name=NO19G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVE
RTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEK
DAKKALEKLREMLWEGGVVKARLKSENVINKAFFSGGGGGQGGGREGGRF
AGGGGGGEEEGEEVEEV*
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mRNA from alignment at chr19:261973..262476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00750.1 ID=NO19G00750.1|Name=NO19G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at chr19:261973..262476+ (Nannochloropsis oceanica)
ATGTTCATCCCGCTCTCCATCCTCTCCTCCCTGCCATCCCTGGCCTCCCT
CCCCCCCTCTCCCCCCCTCCTTGTCGCCGCCCTCATGGACCATCCCACCC
TTGCCCTGAGCGAGGACCAAAGCAGCGTGCGGCCCAACATCCACGTCGAA
AGAACGACTATCATCCTCCGAGAGGTGAGTAGCAACACGCCTGAGGAGGA
GTTGAAGCAGAAATTGTTTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTT
TGAAGAAGGATGTGGAGAACACGTGGTTCGTCTTGTTTGCGACAGAGAAG
GACGCAAAAAAGGCGCTGGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGG
GGTGGTGAAGGCCCGCCTGAAGAGCGAAAATGTGATCAATAAGGCCTTTT
TTTCGGGAGGGGGAGGAGGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTT
GCCGGCGGAGGAGGGGGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGT
GTAG
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Coding sequence (CDS) from alignment at chr19:261973..262476+

>NO19G00750.1 ID=NO19G00750.1|Name=NO19G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr19:261973..262476+ (Nannochloropsis oceanica)
ATGTTCATCCCGCTCTCCATCCTCTCCTCCCTGCCATCCCTGGCCTCCCT
CCCCCCCTCTCCCCCCCTCCTTGTCGCCGCCCTCATGGACCATCCCACCC
TTGCCCTGAGCGAGGACCAAAGCAGCGTGCGGCCCAACATCCACGTCGAA
AGAACGACTATCATCCTCCGAGAGGTGAGTAGCAACACGCCTGAGGAGGA
GTTGAAGCAGAAATTGTTTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTT
TGAAGAAGGATGTGGAGAACACGTGGTTCGTCTTGTTTGCGACAGAGAAG
GACGCAAAAAAGGCGCTGGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGG
GGTGGTGAAGGCCCGCCTGAAGAGCGAAAATGTGATCAATAAGGCCTTTT
TTTCGGGAGGGGGAGGAGGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTT
GCCGGCGGAGGAGGGGGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGT
GTAG
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Synonyms
Publications