NO19G00750, NO19G00750 (gene) Nannochloropsis oceanica

Overview
NameNO19G00750
Unique NameNO19G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr19:261973..262476 +

Link to JBrowse

Properties
Property NameValue
DescriptionLa-related protein 4b
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:261973..262476 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
Homology
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: EWM23576.1 (la-related protein 4b, partial [Nannochloropsis gaditana])

HSP 1 Score: 172.9 bits (437), Expect = 8.200e-40
Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVINKA 133
            MFIPLS+L +LP+LA+L PS  L+VAAL DHPTL L+E+QSSVRPNIHV RTT+ILRE+SS TPEEE++ +L  W+GCPE+++L+KDV +TWFV    E  AK  LE+LRE LW G  ++ARLKSENV+NKA
Sbjct:  156 MFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKA 287
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_009514974.1 (hypothetical protein PHYSODRAFT_554114 [Phytophthora sojae] >EGZ27699.1 hypothetical protein PHYSODRAFT_554114 [Phytophthora sojae])

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L     LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE++     +DGC +V +++ DV +TWFV   TE +A   L  LR   + G  +KARLKSENV+
Sbjct:   61 MYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEA---IFDGCGKVASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVL 186
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_002997728.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68029.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 49/129 (37.98%), Postives = 81/129 (62.79%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L  +  LLV A+ +    +L+  + +++PNI  ERTTIILRE+SS+T  EE++     ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:   45 MYVPVEVIINFSKITQLTDNTALLVEAVQESTVCSLNSSKDAIKPNIKSERTTIILREISSSTKPEEVEA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVL 170
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: POM65220.1 (hypothetical protein PHPALM_19100 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 91.3 bits (225), Expect = 3.100e-15
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L  +  LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE++     ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:   45 MYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVL 170
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: POM73353.1 (hypothetical protein PHPALM_9806 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 91.3 bits (225), Expect = 3.100e-15
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L  +  LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE++     ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:    5 MYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVL 130
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: XP_008907246.1 (hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >ETI43960.1 hypothetical protein F443_11248 [Phytophthora parasitica P1569] >ETK84012.1 hypothetical protein L915_10962 [Phytophthora parasitica] >ETL37421.1 hypothetical protein L916_10859 [Phytophthora parasitica] >ETL90584.1 hypothetical protein L917_10765 [Phytophthora parasitica] >ETM43888.1 hypothetical protein L914_10800 [Phytophthora parasitica] >ETN07489.1 hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >ETO72646.1 hypothetical protein F444_11307 [Phytophthora parasitica P1976] >ETP13771.1 hypothetical protein F441_11163 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L     LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE+      ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:  104 MYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL 229
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: ETP41839.1 (hypothetical protein F442_11155 [Phytophthora parasitica P10297])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L     LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE+      ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:  104 MYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL 229
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: KUF79126.1 (La-related protein 4 [Phytophthora nicotianae])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L     LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE+      ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:  300 MYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL 425
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: KUF97983.1 (Ammonium Transporter (Amt) Family [Phytophthora nicotianae])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            M++P+ ++ +   +  L     LLV A+ D    +L+  + +++PNI  ERTTIILRE+ S+T  EE+      ++GC +V +++ DV +TWFV   +E +A   L  LR   + G  +KARLKSENV+
Sbjct:   45 MYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGA---IFEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL 170
[Close]
BLAST of NO19G00750 vs. NCBI_GenBank
Match: CCA26464.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 86.7 bits (213), Expect = 7.700e-14
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:    1 MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVI 130
            MF+P+  + S   +  L  +P ++  A+ D     LSE + ++RP+   ER TIILRE+ S+T  E++++ LF   G  +VR+   DV +TWFV F +EK+A   L  LRE   +G  +KARLKSENV+
Sbjct:   55 MFVPIETILSFSKIQKLTKNPLMVADAIRDSKICVLSESEDAIRPSAKHERNTIILREIPSDTNGEKVRE-LFQDCGQVDVRS---DVGDTWFVTFPSEKEAVDTLLTLREKKLDGAPIKARLKSENVV 179
The following BLAST results are available for this feature:
BLAST of NO19G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23576.18.200e-4065.15la-related protein 4b, partial [Nannochloropsis ga... [more]
XP_009514974.11.100e-1539.53hypothetical protein PHYSODRAFT_554114 [Phytophtho... [more]
XP_002997728.11.400e-1537.98conserved hypothetical protein [Phytophthora infes... [more]
POM65220.13.100e-1537.98hypothetical protein PHPALM_19100 [Phytophthora pa... [more]
POM73353.13.100e-1537.98hypothetical protein PHPALM_9806 [Phytophthora pal... [more]
XP_008907246.11.600e-1437.98hypothetical protein PPTG_13373 [Phytophthora para... [more]
ETP41839.11.600e-1437.98hypothetical protein F442_11155 [Phytophthora para... [more]
KUF79126.11.600e-1437.98La-related protein 4 [Phytophthora nicotianae][more]
KUF97983.11.600e-1437.98Ammonium Transporter (Amt) Family [Phytophthora ni... [more]
CCA26464.17.700e-1441.09conserved hypothetical protein [Albugo laibachii N... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004401NSK004401Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00750.1NO19G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|156667gene_7465Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100610g1gene6876Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00750.1NO19G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00750 ID=NO19G00750|Name=NO19G00750|organism=Nannochloropsis oceanica|type=gene|length=504bp
ATGTTCATCCCGCTCTCCATCCTCTCCTCCCTGCCATCCCTGGCCTCCCT
CCCCCCCTCTCCCCCCCTCCTTGTCGCCGCCCTCATGGACCATCCCACCC
TTGCCCTGAGCGAGGACCAAAGCAGCGTGCGGCCCAACATCCACGTCGAA
AGAACGACTATCATCCTCCGAGAGGTGAGTAGCAACACGCCTGAGGAGGA
GTTGAAGCAGAAATTGTTTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTT
TGAAGAAGGATGTGGAGAACACGTGGTTCGTCTTGTTTGCGACAGAGAAG
GACGCAAAAAAGGCGCTGGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGG
GGTGGTGAAGGCCCGCCTGAAGAGCGAAAATGTGATCAATAAGGCCTTTT
TTTCGGGAGGGGGAGGAGGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTT
GCCGGCGGAGGAGGGGGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGT
GTAG
back to top

protein sequence of NO19G00750.1

>NO19G00750.1-protein ID=NO19G00750.1-protein|Name=NO19G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQSSVRPNIHVE
RTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVENTWFVLFATEK
DAKKALEKLREMLWEGGVVKARLKSENVINKAFFSGGGGGQGGGREGGRF
AGGGGGGEEEGEEVEEV*
back to top
Synonyms
Publications