NO19G00670, NO19G00670 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G00670 vs. NCBI_GenBank
Match: GAY00776.1 (40S ribosomal protein S13 [Pythium insidiosum]) HSP 1 Score: 263.1 bits (671), Expect = 5.700e-67 Identity = 129/151 (85.43%), Postives = 143/151 (94.70%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKGM+SSA+PYKRTPPSW+K +A+DVEEH+CK AKKGL+PS IGVILRDS+GIAQVKSVTGSK+LR+LKKN LAPEIPEDLY LIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL PNWKYES+TA++LVA Sbjct: 1 MGRMHSKGKGMSSSALPYKRTPPSWLKVSAEDVEEHICKFAKKGLSPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPEIPEDLYQLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRTNRKLAPNWKYESATASALVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_008873812.1 (40S ribosomal protein S13 [Aphanomyces invadans] >ETV97603.1 40S ribosomal protein S13 [Aphanomyces invadans]) HSP 1 Score: 260.0 bits (663), Expect = 4.800e-66 Identity = 128/151 (84.77%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKGM+ SA PYKRTPPSW+K TA+DVE+HVCK AKKGLTPS IGVILRDS+GIAQVKSVTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHL+RNR+DKDSKFRLILIESRIHRLARYYR RKL+PNWKYES+TA++LVA Sbjct: 1 MGRMHSGGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPELPEDLYMLIKKAVAVRKHLDRNRQDKDSKFRLILIESRIHRLARYYRQNRKLSPNWKYESATASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_002895552.1 (40S ribosomal protein S13 [Phytophthora infestans T30-4] >EEY55889.1 40S ribosomal protein S13 [Phytophthora infestans T30-4]) HSP 1 Score: 259.2 bits (661), Expect = 8.300e-66 Identity = 128/151 (84.77%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKGM+ SA PYKR+PPSW+K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVKSVTGSK+LRLLKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR RKL+PNWKYESSTA++LVA Sbjct: 1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESSTASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: OQR92743.1 (40S ribosomal protein S13 [Achlya hypogyna]) HSP 1 Score: 259.2 bits (661), Expect = 8.300e-66 Identity = 127/151 (84.11%), Postives = 143/151 (94.70%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS+GKGM+ SA PYKRTPPSW+K TA+DVE+HVCK AKKGL+PS IGVILRDS+GIAQVKS+TGSK+LR+LKKN LAP +PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL+PNWKYES+TA++LVA Sbjct: 1 MGRMHSAGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLSPSQIGVILRDSHGIAQVKSITGSKVLRILKKNGLAPGLPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRTNRKLSPNWKYESATASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_009844517.1 (40S ribosomal protein S13 [Aphanomyces astaci] >ETV65998.1 40S ribosomal protein S13 [Aphanomyces astaci]) HSP 1 Score: 258.5 bits (659), Expect = 1.400e-65 Identity = 127/151 (84.11%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKG++ SA PYKRTPPSW+K TA+DVE+HVCK AKKGLTPS IGVILRDS+GIAQVKSVTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHL+RNR+DKDSKFRLILIESRIHRLARYYR RKL+PNWKYES+TA++LVA Sbjct: 1 MGRMHSGGKGISKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPELPEDLYMLIKKAVAVRKHLDRNRQDKDSKFRLILIESRIHRLARYYRQNRKLSPNWKYESATASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_009532082.1 (hypothetical protein PHYSODRAFT_355091 [Phytophthora sojae] >EGZ11749.1 hypothetical protein PHYSODRAFT_355091 [Phytophthora sojae]) HSP 1 Score: 258.1 bits (658), Expect = 1.800e-65 Identity = 127/151 (84.11%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKGM+ SA PYKR+PPSW+K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVKSVTGSK+LRLLKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR RKL+PNWKYES+TA++LVA Sbjct: 1 MGRMHSRGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESATASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_008902251.1 (40S ribosomal protein S13 [Phytophthora parasitica INRA-310] >ETI51886.1 40S ribosomal protein S13 [Phytophthora parasitica P1569] >ETK91712.1 40S ribosomal protein S13 [Phytophthora parasitica] >ETL45125.1 40S ribosomal protein S13 [Phytophthora parasitica] >ETL98275.1 40S ribosomal protein S13 [Phytophthora parasitica] >ETM51440.1 40S ribosomal protein S13 [Phytophthora parasitica] >ETN12260.1 40S ribosomal protein S13 [Phytophthora parasitica INRA-310] >ETO80639.1 40S ribosomal protein S13 [Phytophthora parasitica P1976] >ETP21668.1 40S ribosomal protein S13 [Phytophthora parasitica CJ01A1] >ETP49561.1 40S ribosomal protein S13 [Phytophthora parasitica P10297] >KUF87813.1 40S ribosomal protein S13 [Phytophthora nicotianae] >KUF98850.1 hypothetical protein AM588_10011618 [Phytophthora nicotianae]) HSP 1 Score: 258.1 bits (658), Expect = 1.800e-65 Identity = 127/151 (84.11%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKGM+ SA PYKR+PPSW+K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVKSVTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR RKL+PNWKYESSTA++LVA Sbjct: 1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRVLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESSTASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_008607509.1 (40S ribosomal protein S13 [Saprolegnia diclina VS20] >XP_012202228.1 40S ribosomal protein S13 [Saprolegnia parasitica CBS 223.65] >EQC39448.1 40S ribosomal protein S13 [Saprolegnia diclina VS20] >KDO27138.1 40S ribosomal protein S13 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 257.3 bits (656), Expect = 3.100e-65 Identity = 126/151 (83.44%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS+GKGM+ SA PYKRTPPSW+K TA+DVE+HVCK AKKGL+PS IGVILRDS+GIAQVKS+TGSK+LR+LKKN LAP +PEDLY LIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL+PNWKYES+TA++LVA Sbjct: 1 MGRMHSAGKGMSKSARPYKRTPPSWLKVTAEDVEDHVCKFAKKGLSPSQIGVILRDSHGIAQVKSITGSKVLRILKKNGLAPGLPEDLYQLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRTNRKLSPNWKYESATASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_024576185.1 (40s ribosomal protein s13 [Plasmopara halstedii] >CEG39816.1 40s ribosomal protein s13 [Plasmopara halstedii]) HSP 1 Score: 256.9 bits (655), Expect = 4.100e-65 Identity = 126/151 (83.44%), Postives = 142/151 (94.04%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHS GKGM+ SA PYKR+PPSW+K +A+DVE+H+CK AKKGLTPS IGVILRDS+GIAQVKSVTGSK+LR+LKKN LAPE+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR RKL+PNWKYES+TA++LVA Sbjct: 1 MGRMHSHGKGMSKSARPYKRSPPSWLKVSAEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRVLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESATASTLVA 151
BLAST of NO19G00670 vs. NCBI_GenBank
Match: XP_024379701.1 (40S ribosomal protein S13 isoform X1 [Physcomitrella patens] >XP_024387771.1 40S ribosomal protein S13 [Physcomitrella patens] >XP_024398877.1 40S ribosomal protein S13 [Physcomitrella patens] >PNR37897.1 hypothetical protein PHYPA_021007 [Physcomitrella patens] >PNR44664.1 hypothetical protein PHYPA_014433 [Physcomitrella patens] >PNR51734.1 hypothetical protein PHYPA_010922 [Physcomitrella patens]) HSP 1 Score: 250.4 bits (638), Expect = 3.800e-63 Identity = 123/151 (81.46%), Postives = 139/151 (92.05%), Query Frame = 0 Query: 9 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 160 MGRMHSSGKGM+SSA+PYKR+PPSW+K T +VEEH+CKLAKKGLTPS IGVILRDS+GIAQV SVTGSK+LR+LK + L PEIPEDLY LIKKAVAVRKHLERNRKDKDSKFRLILIESR+HRLARYY+ T+KL P WKYES+TA++LVA Sbjct: 1 MGRMHSSGKGMSSSALPYKRSPPSWLKITTAEVEEHICKLAKKGLTPSQIGVILRDSHGIAQVNSVTGSKVLRILKGHGLGPEIPEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILIESRVHRLARYYKRTKKLPPTWKYESATASTLVA 151 The following BLAST results are available for this feature:
BLAST of NO19G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G00670 ID=NO19G00670|Name=NO19G00670|organism=Nannochloropsis oceanica|type=gene|length=3684bpback to top protein sequence of NO19G00670.1 >NO19G00670.1-protein ID=NO19G00670.1-protein|Name=NO19G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bpback to top protein sequence of NO19G00670.2 >NO19G00670.2-protein ID=NO19G00670.2-protein|Name=NO19G00670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=160bpback to top Synonyms
Publications
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