NO19G00600, NO19G00600 (gene) Nannochloropsis oceanica

Overview
NameNO19G00600
Unique NameNO19G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr19:231738..232913 -

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Properties
Property NameValue
DescriptionSNARE associated Golgi protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:231738..232913 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015414Tvp38/TMEM64-like
IPR032816SNARE_assoc
Homology
BLAST of NO19G00600 vs. NCBI_GenBank
Match: EWM23566.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 3.500e-65
Identity = 150/258 (58.14%), Postives = 177/258 (68.60%), Query Frame = 0
Query:   88 YSNVGHHHVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREAAEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKEL 346
            YS  GH HVA  LS+FL WVGRHP  GAMAFA VYAL V+FFVPGAALTLGGGFLFG ALGVG GT+ AS+AVFVGAS GA+ +F LGR LL + AQS L RY +LRALDASL                                         K++LLLRLSPLVPF+ALNY+MSVTS++ + Y +GLVGM+PAVVAYSFLGTTAG ++REA        GGE  +ER V+I MYV+G V+LV AVG++SR+AR+EL
Sbjct:   69 YSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHG-----------------------------------HRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREA--------GGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREEL 283          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: CBJ28819.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.0 bits (354), Expect = 8.000e-30
Identity = 82/209 (39.23%), Postives = 121/209 (57.89%), Query Frame = 0
Query:   88 YSNVGHHHVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAI 297
            Y+  G   VA TL+SFL WV  +P  GA+AFA VY    + F+PG+ LTLG G +FG ALG G+G L  S+AV  GA+ G++++F LGR +L++ AQ +  ++ +L+A++ +++S                                       K+++LLRLSP+VPFSA NY+M VT +   DYA+G VG +P  VA+ F+GTTA  +
Sbjct:   62 YTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKS------------------------------------QGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGL 234          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: EJK65235.1 (hypothetical protein THAOC_13931 [Thalassiosira oceanica])

HSP 1 Score: 132.5 bits (332), Expect = 2.900e-27
Identity = 89/247 (36.03%), Postives = 131/247 (53.04%), Query Frame = 0
Query:   99 TLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRD-VAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREAAEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKE 345
            T+S+FL W+  +   G  AF GVY +  + FVPG+ LTLGGGF+FG ALG+G G   AS AVF+GAS GA+ SF LGR LLRD V + +  +Y ++ AL ++L                                         ++ +LLRLSP++PF+A+NY++  TS+    Y   L+G+LP  V Y F+G TAG+++    E G    G        V +   ++G V  + ++ L+  YA+KE
Sbjct:   60 TVSAFLEWIESNVIAGVFAFMGVYFVATVLFVPGSVLTLGGGFVFGKALGLGRGVALASSAVFIGASLGAIASFLLGRYLLRDWVTERLFKKYKIMTALGSALEE------------------------------------KGFQIAILLRLSPIIPFNAINYILGATSMRLVHYIFSLLGILPGTVLYCFIGATAGSLT----ESGSAVSG-------PVAVASLIVGIVFGLASLFLVGYYAKKE 259          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: EJK67984.1 (hypothetical protein THAOC_10891 [Thalassiosira oceanica])

HSP 1 Score: 123.2 bits (308), Expect = 1.700e-24
Identity = 84/207 (40.58%), Postives = 107/207 (51.69%), Query Frame = 0
Query:   95 HVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLG---TTAGAISR 299
            HV      FL WV  H   G +AF  VYA+  +FFVPGA LTLGGG++FG A G+G G L AS+AVF GAS GA+ SF LGR LLRD A  +  RYP+++ALDA++                                         K+ +LLRLS  VPF+ALNY+   T+I    Y V L+GM   +   + LG      G +SR
Sbjct:   77 HVQAITRRFLDWVQNHVYVGILAFVLVYAIATVFFVPGAVLTLGGGYVFGSAFGLGKGVLVASLAVFAGASGGAIASFLLGRYLLRDYASGLADRYPIMKALDAAI------------------------------------GRNSFKIFVLLRLSVNVPFNALNYISGATAIGLGVYCVTLLGMCLVLCCTASLGPLPVVLGMVSR 247          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: OEU13175.1 (SNARE_assoc-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 122.1 bits (305), Expect = 3.900e-24
Identity = 72/197 (36.55%), Postives = 108/197 (54.82%), Query Frame = 0
Query:  103 FLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLF-GHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRD-VAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAIS 298
            FL WV ++P  G +AF  VY +C IFF+PG+ LTLG GF+F      +  G L  +IA F+GAS GA++SF LGR L R+ ++  ++ +YP+  A+D +L                                         ++M+LLRLSP++PF+ LNY+  +T I   DY +  +GMLP  + Y FLG++AG++S
Sbjct:    8 FLNWVEQNPIYGVLAFVLVYVVCTIFFIPGSILTLGAGFVFTASTSSLWTGVLLGTIATFIGASIGAILSFLLGRYLFRESISTKLITKYPVFTAIDTALNE------------------------------------KGLRIMILLRLSPIIPFNVLNYVSGITGIKLFDYCIACIGMLPGTILYVFLGSSAGSLS 168          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: XP_002185108.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43240.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 119.0 bits (297), Expect = 3.300e-23
Identity = 72/202 (35.64%), Postives = 104/202 (51.49%), Query Frame = 0
Query:   93 HHHVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAG 295
            + +V   + SFL W+  +  EG   F  VY    I F+PG+ LTLG GF+F  + G+G+G +    AVF+GAS GA  SF +GR LLRD A  +  +Y +  ALD +L+                                        K+++LLRLSP+VPF+A+NY+  VT+++  DY + L  +LP    Y FLG +AG
Sbjct:   44 NRYVRDGIDSFLDWIEENSVEGIFLFVLVYFAATILFIPGSILTLGAGFVFASSFGLGLGLVIGVFAVFLGASLGATASFFIGRYLLRDQATKLTKKYAVFEALDVALQEN------------------------------------GLKILVLLRLSPIVPFNAINYICGVTAVSIRDYILALFAILPGTTLYVFLGASAG 209          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: XP_002179936.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48922.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 118.6 bits (296), Expect = 4.300e-23
Identity = 87/260 (33.46%), Postives = 129/260 (49.62%), Query Frame = 0
Query:   88 YSNVGHHHVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHAL-GVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREAAEGGE-EEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKEL 346
            + ++    +  T +SF  W+  HP  G +A   VY    I FVPG+ LT+G GF F  A    G G   +S+AVFVGAS G++ SF LGR L R+    +   YP+ RA+D +L +                                       K+M+LLRLSPL+P++AL+Y+  VTSI+   Y+V LVG+LP  + +  +G TA ++    AEG +  E GG       +R+   V G +   +  G+ S Y++ EL
Sbjct:   55 FDSMKEKRIERTAASFFTWIESHPFLGVLAVILVYTAATICFVPGSVLTIGTGFAFRSAFDDFGKGLALSSLAVFVGASCGSVCSFLLGRYLFREWVVRLASSYPIFRAIDRALENN------------------------------------GLKIMVLLRLSPLIPYNALDYISGVTSISLFSYSVALVGLLPGTITFCAIGATASSL----AEGTDRSENGG-------LRVFALVFGLIFAFLGAGVASFYSKIEL 267          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: CBJ28293.1 (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus])

HSP 1 Score: 111.7 bits (278), Expect = 5.200e-21
Identity = 73/209 (34.93%), Postives = 110/209 (52.63%), Query Frame = 0
Query:   93 HHHVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASL-RSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLG-TTAGAISRE 300
            H +V   L +   W+  +P  G + FA ++ L  + FVPG  LT+G G  FG ALG G G L  S+AV +GA    +I+F LGR +L + AQS   RY +L A++ ++ R+G                                      KVM+LLRLSPLVPFS  N++  +T ++  DY +G VG++P  +A+ ++G +TAG ++ E
Sbjct:   86 HDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNG-------------------------------------VKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 257          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: CEM03564.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 109.8 bits (273), Expect = 2.000e-20
Identity = 84/253 (33.20%), Postives = 120/253 (47.43%), Query Frame = 0
Query:   96 VAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTT---AGAISREAAEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKEL 346
            VA  L  F  WV  +PA G +A+  VY +C + F+PG+ LTLG GF F  A G G G  A   AV VGA  GA ++F  GR L +   Q +  ++ ++RA+D    +                                       K+ +LLRLSP+VPFSA NY+M  T     DYA+G +G++P    Y ++G     AGA S      G+ EG G        + V   +G V+  +AV +++ +ARK L
Sbjct:   79 VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFET------------------------------------QGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPAFAGACS------GKAEGSGHWS-----QWVFLAVGLVATFIAVFIVTWFARKAL 284          
BLAST of NO19G00600 vs. NCBI_GenBank
Match: OEU13059.1 (SNARE_assoc-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.5 bits (267), Expect = 9.800e-20
Identity = 81/244 (33.20%), Postives = 121/244 (49.59%), Query Frame = 0
Query:  103 FLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHAL-GVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREAAEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKEL 346
            FL WV R+P +G  A    Y +  I FVPG+ LTLG G+  G A+     G L A+ +VF+GAS G++ SF LGR L RD    +   YP+ +A++ +L                                         K+M+LLRLSPL+PF+AL+Y+  VTSI+  DY V LV +LP  +   F+G +A ++S    +      G   K+  +V  +++  GG      V + S Y+++EL
Sbjct:    2 FLEWVHRNPYKGIFAITLCYIVATILFVPGSILTLGAGYAIGSAIENTFGGVLLATASVFIGASIGSICSFLLGRYLFRDCVLQLAFSYPIFQAIERALEEN------------------------------------GLKIMILLRLSPLIPFNALDYISGVTSISLRDYTVALVALLPGALLLCFVGASASSLS----DATTTSTGKTVKIFTIVSGILF--GG----CGVWMASYYSKQEL 199          
The following BLAST results are available for this feature:
BLAST of NO19G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23566.13.500e-6558.14SNARE associated Golgi protein [Nannochloropsis ga... [more]
CBJ28819.18.000e-3039.23conserved unknown protein [Ectocarpus siliculosus][more]
EJK65235.12.900e-2736.03hypothetical protein THAOC_13931 [Thalassiosira oc... [more]
EJK67984.11.700e-2440.58hypothetical protein THAOC_10891 [Thalassiosira oc... [more]
OEU13175.13.900e-2436.55SNARE_assoc-domain-containing protein, partial [Fr... [more]
XP_002185108.13.300e-2335.64predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002179936.14.300e-2333.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ28293.15.200e-2134.93Hypothetical UPF0043 protein slr0305 [Ectocarpus s... [more]
CEM03564.12.000e-2033.20unnamed protein product [Vitrella brassicaformis C... [more]
OEU13059.19.800e-2033.20SNARE_assoc-domain-containing protein [Fragilariop... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00600.1NO19G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00600.1NO19G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00600 ID=NO19G00600|Name=NO19G00600|organism=Nannochloropsis oceanica|type=gene|length=1176bp
ATGTTTGTCCGCACCAGCACCGTCCCCGCCTCCACCTCCTTCGTACCTCC
GCCCTCACCTTCTGAAGAAACACCGCTAGCGCAACCTCCAGCCATACAGA
TTACGTCGCGTCAACCATGCGGTTCTGACTCTAACGCCGCTGCCATAACG
GACGACTCTTACCCACCCTACCATCGCCACCACCTTCACCGTCGGCGGCG
GCGTGTCCGAGCTGGGGTGTTGCTCCTCTGGTCTATAGTCATTATCGCCG
TTGTGGTTGATTATTCAAATGTCGGACACCACCACGTGGCACACACCCTC
TCCTCTTTCCTCGCGTGGGTGGGCCGTCATCCCGCAGAGGGAGCAATGGC
TTTCGCGGGCGTTTACGCGCTTTGCGTCATTTTCTTTGTGCCTGGTGCGG
CCCTCACGTTAGGGGGTGGGTTTTTGTTCGGCCATGCGTTAGGGGTAGGG
ATAGGGACCTTGGCTGCTTCGATTGCTGTGTTTGTAGGCGCTAGCACAGG
GGCATTGATAAGCTTTGGGTTGGGGAGGTGTTTGTTGAGAGACGTAGCGC
AGAGTGTGTTGGGTAGATACCCTTTGCTGAGGGCGTTGGATGCTTCGTTG
AGGAGTGGTGAGGAAGAGGGAGGGAGGGGTGGTGGTGGGGGTGCCACGCT
AAACTCCTCTGCTTCGGAGCAGGGTGGAGGAGAAGGAGGAGGAGCGGTGG
GAGGAGGAAAGAGAAGGGGGCTGAAAGTGATGCTGCTTCTTCGTCTTTCT
CCTCTCGTGCCTTTTTCGGCGTTGAATTACCTGATGAGTGTCACGTCCAT
CACCAGTGAAGACTACGCCGTGGGGTTGGTGGGGATGCTCCCAGCAGTGG
TTGCCTATTCCTTCCTGGGAACGACAGCAGGGGCGATAAGCCGGGAGGCC
GCTGAAGGAGGGGAGGAGGAGGGAGGGGGGGAGAGAAAGTTGGAGAGGGT
AGTGAGAATTGTCATGTATGTGCTCGGGGGGGTGAGCCTGGTGGTGGCGG
TGGGATTGATGAGTCGATATGCACGTAAGGAGTTGAGGAGGATGGAGGAG
GAGAGGGAGGAGGAGGGGGAGGAGAGAGAAGAGGGGAGAGAAAATGAGGA
GAGAGAAGAGGAGCGGGAGGAGGGTCTTGGCAGGGAACGGAAGGGTGGGT
TTTCTCGAAGCCGAGAAACATCATAG
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protein sequence of NO19G00600.1

>NO19G00600.1-protein ID=NO19G00600.1-protein|Name=NO19G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MFVRTSTVPASTSFVPPPSPSEETPLAQPPAIQITSRQPCGSDSNAAAIT
DDSYPPYHRHHLHRRRRRVRAGVLLLWSIVIIAVVVDYSNVGHHHVAHTL
SSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVG
IGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASL
RSGEEEGGRGGGGGATLNSSASEQGGGEGGGAVGGGKRRGLKVMLLLRLS
PLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREA
AEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKELRRMEE
EREEEGEEREEGRENEEREEEREEGLGRERKGGFSRSRETS*
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Synonyms
Publications