NO19G00600.1, NO19G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00600.1
Unique NameNO19G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr19:231738..232913 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:231738..232913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00600.1 vs.
Match: EWM23566.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 287.7 bits (735), Expect = 5.300e-74
Identity = 196/385 (50.91%), Postives = 239/385 (62.08%), Query Frame = 0 
Query:    9 PASTSFVPPPSPSEETPLAQ-PPAIQITSRQPCGSDSNAAAITDDSYPPYHRHHLHRRRRRVRAGVLLLWSIVIIAVVVDYSNVGHHHVAHTLSSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVGIGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASLRSGEEEGGRGGGGGATLNSSASEQGGGEGGGAVGGGKRRGLKVMLLLRLSPLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREAAEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKELRRMEEERE---EEGEEREEGRENEEREEEREEGLGRERKGGFSRSRE 390
            P   S  P P P EETP A  PP  QI   +      +A                 RRR  ++ G+L+LW +V+I + VDYS  GH HVA  LS+FL WVGRHP  GAMAFA VYAL V+FFVPGAALTLGGGFLFG ALGVG GT+ AS+AVFVGAS GA+ +F LGR LL + AQS L RY +LRALDASL      G RG                               K++LLLRLSPLVPF+ALNY+MSVTS++ + Y +GLVGM+PAVVAYSFLGTTAG ++REA        GGE  +ER V+I MYV+G V+LV AVG++SR+AR+ELR++++E E    EG + E G E     E +E G GRE K    R +E
Sbjct:    3 PPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCC--------------RRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASL-----HGHRGL------------------------------KIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREA--------GGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEG----EVKEVGRGREEKQEVEREKE 326
The following BLAST results are available for this feature:
BLAST of NO19G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23566.15.300e-7450.91SNARE associated Golgi protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00600NO19G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00600.1NO19G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00600.1.cds1NO19G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00600.1 ID=NO19G00600.1|Name=NO19G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGTTTGTCCGCACCAGCACCGTCCCCGCCTCCACCTCCTTCGTACCTCC
GCCCTCACCTTCTGAAGAAACACCGCTAGCGCAACCTCCAGCCATACAGA
TTACGTCGCGTCAACCATGCGGTTCTGACTCTAACGCCGCTGCCATAACG
GACGACTCTTACCCACCCTACCATCGCCACCACCTTCACCGTCGGCGGCG
GCGTGTCCGAGCTGGGGTGTTGCTCCTCTGGTCTATAGTCATTATCGCCG
TTGTGGTTGATTATTCAAATGTCGGACACCACCACGTGGCACACACCCTC
TCCTCTTTCCTCGCGTGGGTGGGCCGTCATCCCGCAGAGGGAGCAATGGC
TTTCGCGGGCGTTTACGCGCTTTGCGTCATTTTCTTTGTGCCTGGTGCGG
CCCTCACGTTAGGGGGTGGGTTTTTGTTCGGCCATGCGTTAGGGGTAGGG
ATAGGGACCTTGGCTGCTTCGATTGCTGTGTTTGTAGGCGCTAGCACAGG
GGCATTGATAAGCTTTGGGTTGGGGAGGTGTTTGTTGAGAGACGTAGCGC
AGAGTGTGTTGGGTAGATACCCTTTGCTGAGGGCGTTGGATGCTTCGTTG
AGGAGTGGTGAGGAAGAGGGAGGGAGGGGTGGTGGTGGGGGTGCCACGCT
AAACTCCTCTGCTTCGGAGCAGGGTGGAGGAGAAGGAGGAGGAGCGGTGG
GAGGAGGAAAGAGAAGGGGGCTGAAAGTGATGCTGCTTCTTCGTCTTTCT
CCTCTCGTGCCTTTTTCGGCGTTGAATTACCTGATGAGTGTCACGTCCAT
CACCAGTGAAGACTACGCCGTGGGGTTGGTGGGGATGCTCCCAGCAGTGG
TTGCCTATTCCTTCCTGGGAACGACAGCAGGGGCGATAAGCCGGGAGGCC
GCTGAAGGAGGGGAGGAGGAGGGAGGGGGGGAGAGAAAGTTGGAGAGGGT
AGTGAGAATTGTCATGTATGTGCTCGGGGGGGTGAGCCTGGTGGTGGCGG
TGGGATTGATGAGTCGATATGCACGTAAGGAGTTGAGGAGGATGGAGGAG
GAGAGGGAGGAGGAGGGGGAGGAGAGAGAAGAGGGGAGAGAAAATGAGGA
GAGAGAAGAGGAGCGGGAGGAGGGTCTTGGCAGGGAACGGAAGGGTGGGT
TTTCTCGAAGCCGAGAAACATCATAG
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protein sequence of NO19G00600.1

>NO19G00600.1-protein ID=NO19G00600.1-protein|Name=NO19G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MFVRTSTVPASTSFVPPPSPSEETPLAQPPAIQITSRQPCGSDSNAAAIT
DDSYPPYHRHHLHRRRRRVRAGVLLLWSIVIIAVVVDYSNVGHHHVAHTL
SSFLAWVGRHPAEGAMAFAGVYALCVIFFVPGAALTLGGGFLFGHALGVG
IGTLAASIAVFVGASTGALISFGLGRCLLRDVAQSVLGRYPLLRALDASL
RSGEEEGGRGGGGGATLNSSASEQGGGEGGGAVGGGKRRGLKVMLLLRLS
PLVPFSALNYLMSVTSITSEDYAVGLVGMLPAVVAYSFLGTTAGAISREA
AEGGEEEGGGERKLERVVRIVMYVLGGVSLVVAVGLMSRYARKELRRMEE
EREEEGEEREEGRENEEREEEREEGLGRERKGGFSRSRETS*
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mRNA from alignment at chr19:231738..232913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00600.1 ID=NO19G00600.1|Name=NO19G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp|location=Sequence derived from alignment at chr19:231738..232913- (Nannochloropsis oceanica)
ATGTTTGTCCGCACCAGCACCGTCCCCGCCTCCACCTCCTTCGTACCTCC
GCCCTCACCTTCTGAAGAAACACCGCTAGCGCAACCTCCAGCCATACAGA
TTACGTCGCGTCAACCATGCGGTTCTGACTCTAACGCCGCTGCCATAACG
GACGACTCTTACCCACCCTACCATCGCCACCACCTTCACCGTCGGCGGCG
GCGTGTCCGAGCTGGGGTGTTGCTCCTCTGGTCTATAGTCATTATCGCCG
TTGTGGTTGATTATTCAAATGTCGGACACCACCACGTGGCACACACCCTC
TCCTCTTTCCTCGCGTGGGTGGGCCGTCATCCCGCAGAGGGAGCAATGGC
TTTCGCGGGCGTTTACGCGCTTTGCGTCATTTTCTTTGTGCCTGGTGCGG
CCCTCACGTTAGGGGGTGGGTTTTTGTTCGGCCATGCGTTAGGGGTAGGG
ATAGGGACCTTGGCTGCTTCGATTGCTGTGTTTGTAGGCGCTAGCACAGG
GGCATTGATAAGCTTTGGGTTGGGGAGGTGTTTGTTGAGAGACGTAGCGC
AGAGTGTGTTGGGTAGATACCCTTTGCTGAGGGCGTTGGATGCTTCGTTG
AGGAGTGGTGAGGAAGAGGGAGGGAGGGGTGGTGGTGGGGGTGCCACGCT
AAACTCCTCTGCTTCGGAGCAGGGTGGAGGAGAAGGAGGAGGAGCGGTGG
GAGGAGGAAAGAGAAGGGGGCTGAAAGTGATGCTGCTTCTTCGTCTTTCT
CCTCTCGTGCCTTTTTCGGCGTTGAATTACCTGATGAGTGTCACGTCCAT
CACCAGTGAAGACTACGCCGTGGGGTTGGTGGGGATGCTCCCAGCAGTGG
TTGCCTATTCCTTCCTGGGAACGACAGCAGGGGCGATAAGCCGGGAGGCC
GCTGAAGGAGGGGAGGAGGAGGGAGGGGGGGAGAGAAAGTTGGAGAGGGT
AGTGAGAATTGTCATGTATGTGCTCGGGGGGGTGAGCCTGGTGGTGGCGG
TGGGATTGATGAGTCGATATGCACGTAAGGAGTTGAGGAGGATGGAGGAG
GAGAGGGAGGAGGAGGGGGAGGAGAGAGAAGAGGGGAGAGAAAATGAGGA
GAGAGAAGAGGAGCGGGAGGAGGGTCTTGGCAGGGAACGGAAGGGTGGGT
TTTCTCGAAGCCGAGAAACATCATAG
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Coding sequence (CDS) from alignment at chr19:231738..232913-

>NO19G00600.1 ID=NO19G00600.1|Name=NO19G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr19:231738..232913- (Nannochloropsis oceanica)
ATGTTTGTCCGCACCAGCACCGTCCCCGCCTCCACCTCCTTCGTACCTCC
GCCCTCACCTTCTGAAGAAACACCGCTAGCGCAACCTCCAGCCATACAGA
TTACGTCGCGTCAACCATGCGGTTCTGACTCTAACGCCGCTGCCATAACG
GACGACTCTTACCCACCCTACCATCGCCACCACCTTCACCGTCGGCGGCG
GCGTGTCCGAGCTGGGGTGTTGCTCCTCTGGTCTATAGTCATTATCGCCG
TTGTGGTTGATTATTCAAATGTCGGACACCACCACGTGGCACACACCCTC
TCCTCTTTCCTCGCGTGGGTGGGCCGTCATCCCGCAGAGGGAGCAATGGC
TTTCGCGGGCGTTTACGCGCTTTGCGTCATTTTCTTTGTGCCTGGTGCGG
CCCTCACGTTAGGGGGTGGGTTTTTGTTCGGCCATGCGTTAGGGGTAGGG
ATAGGGACCTTGGCTGCTTCGATTGCTGTGTTTGTAGGCGCTAGCACAGG
GGCATTGATAAGCTTTGGGTTGGGGAGGTGTTTGTTGAGAGACGTAGCGC
AGAGTGTGTTGGGTAGATACCCTTTGCTGAGGGCGTTGGATGCTTCGTTG
AGGAGTGGTGAGGAAGAGGGAGGGAGGGGTGGTGGTGGGGGTGCCACGCT
AAACTCCTCTGCTTCGGAGCAGGGTGGAGGAGAAGGAGGAGGAGCGGTGG
GAGGAGGAAAGAGAAGGGGGCTGAAAGTGATGCTGCTTCTTCGTCTTTCT
CCTCTCGTGCCTTTTTCGGCGTTGAATTACCTGATGAGTGTCACGTCCAT
CACCAGTGAAGACTACGCCGTGGGGTTGGTGGGGATGCTCCCAGCAGTGG
TTGCCTATTCCTTCCTGGGAACGACAGCAGGGGCGATAAGCCGGGAGGCC
GCTGAAGGAGGGGAGGAGGAGGGAGGGGGGGAGAGAAAGTTGGAGAGGGT
AGTGAGAATTGTCATGTATGTGCTCGGGGGGGTGAGCCTGGTGGTGGCGG
TGGGATTGATGAGTCGATATGCACGTAAGGAGTTGAGGAGGATGGAGGAG
GAGAGGGAGGAGGAGGGGGAGGAGAGAGAAGAGGGGAGAGAAAATGAGGA
GAGAGAAGAGGAGCGGGAGGAGGGTCTTGGCAGGGAACGGAAGGGTGGGT
TTTCTCGAAGCCGAGAAACATCATAG
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Synonyms
Publications