NO19G00540, NO19G00540 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G00540 vs. NCBI_GenBank
Match: EWM23560.1 (Optic atrophy 3 [Nannochloropsis gaditana]) HSP 1 Score: 268.9 bits (686), Expect = 2.900e-68 Identity = 145/182 (79.67%), Postives = 153/182 (84.07%), Query Frame = 0 Query: 1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARLFXXXXXXXXXXXXXXXITLEDLPPAPRFADVETL 183 M GLPLLKLGGLAIKTLAKPVAKR+K+EA +RP LK YVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSN SAA+KEAAKEA RQKFREDLEARFL LEARV MEE+QQAGW+ +F + LEDLP AP FADVETL Sbjct: 1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVF-----PGSKGKEGRRVALEDLPEAPHFADVETL 177
BLAST of NO19G00540 vs. NCBI_GenBank
Match: XP_002288298.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED93734.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 100.9 bits (250), Expect = 1.000e-17 Identity = 61/141 (43.26%), Postives = 88/141 (62.41%), Query Frame = 0 Query: 6 LLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFRED---LEARFLVLEARVDAMEEQQQA 144 L KLG L IKTL+KPV+KR++ + + P + + VGQ TH + +TI S+G+K + LE+ A +RGAD LSET +F V G I+ +EY RS+ KKE EA QK R+D L+A+ + L+ R+ A+EE +A Sbjct: 1 LAKLGSLLIKTLSKPVSKRLRHQMIKYPTSRDALIWVGQSTHAITTRMTIWSSGYKVRSISRLEDEEALSRGADLLSETFIFAVSGGIVVYEYHRSSEKEKKKE---EARLQKIRDDATRLQAKLISLDTRLSALEEYAKA 138
BLAST of NO19G00540 vs. NCBI_GenBank
Match: CEP01039.1 (hypothetical protein PBRA_008352 [Plasmodiophora brassicae]) HSP 1 Score: 94.7 bits (234), Expect = 7.400e-16 Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = 0 Query: 8 KLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARL 149 K+G LAI+TLAKPV+K ++ + P + +V GQW H+ GH+ VK +EEA A GAD +SE ++F V G ++TFE RS+ SA +A +E + + +EARF LE V M ++Q+A A + Sbjct: 10 KIGALAIRTLAKPVSKTFVSQSQQSPFWRSVFVRYGQWHHRQQYKFQARLLGHRVKNVKPIEEAKALELGADVISEYMIFAVAGIVITFEIYRSSRSAEAAKADQERQARADKASVEARFAFLEREVARMHDEQEAALAAI 150
BLAST of NO19G00540 vs. NCBI_GenBank
Match: OQR95243.1 (hypothetical protein ACHHYP_00157 [Achlya hypogyna]) HSP 1 Score: 88.2 bits (217), Expect = 7.000e-14 Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 0 Query: 1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH---KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQA 144 MV +PL K+GGL ++TL KPVAK++K A +P L +VGQ+ H I +S G K++ +K+L A +G++FL ETL+F V + +EY RS+ S+ +KE + ++ +E RF LE + +ME++ A Sbjct: 1 MVAIPLFKVGGLLLRTLTKPVAKQLKQSAKTKPWLNSVCRSVGQYQHVVGVRIQMSMQGQIHWKTIQIKDLPADQAVDKGSEFLGETLIFSVAVIVAWYEYDRSSRSSKEKELKANEREFQRQQQIEMRFRTLEHLMASMEDEISA 146
BLAST of NO19G00540 vs. NCBI_GenBank
Match: ADE75998.1 (unknown [Picea sitchensis]) HSP 1 Score: 87.8 bits (216), Expect = 9.100e-14 Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 0 Query: 4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH-KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAK----EAGRQKFREDLEARFLVLEARVDAME 139 LPL KLG LA+KTL+KP+A R+K +AA P + + + Q H+ S + GH ++ ++ L+E A D L E +F VGGA + FE RS+ S A+KE A+ EA RQ+ +DL ++L+ RVD +E Sbjct: 3 LPLFKLGTLALKTLSKPIASRLKTQAAHHPRFRSLIINLAQTNHKFSTQLQRRIYGHATNVAIRPLDEEKAVQAFTDLLGEVFIFSVGGAAVIFEVQRSSRSEARKEEARKQEFEALRQR-EDDLARELVLLKQRVDELE 141
BLAST of NO19G00540 vs. NCBI_GenBank
Match: GAX24971.1 (hypothetical protein FisN_2Lh247 [Fistulifera solaris]) HSP 1 Score: 87.8 bits (216), Expect = 9.100e-14 Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 0 Query: 4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQ 141 LP+ KL L +KTLAKP++KR+K E + +R + +GQ +HQ S+ +TI SAG+K +K LE+ A GA+F+ E + V G + EY RS +KE + + R+ L+A L+ RV +E Q Sbjct: 5 LPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKAAKAERDALQAALHTLDLRVKELERQ 141
BLAST of NO19G00540 vs. NCBI_GenBank
Match: GAX12416.1 (hypothetical protein FisN_2Hh247 [Fistulifera solaris]) HSP 1 Score: 87.0 bits (214), Expect = 1.600e-13 Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 0 Query: 4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQ 141 LP+ KL L +KTLAKP++KR+K E + +R + +GQ +HQ S+ +TI SAG+K +K LE+ A GA+F+ E + V G + EY RS +KE + + R+ L+A L+ RV +E Q Sbjct: 5 LPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKASKAERDALQAALHKLDLRVKELERQ 141
BLAST of NO19G00540 vs. NCBI_GenBank
Match: XP_006361044.1 (PREDICTED: optic atrophy 3 protein homolog [Solanum tuberosum]) HSP 1 Score: 85.9 bits (211), Expect = 3.500e-13 Identity = 52/140 (37.14%), Postives = 79/140 (56.43%), Query Frame = 0 Query: 4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFR---EDLEARFLVLEARVDAMEE 140 LPLLKLG LA++TL+KP+A R+K EA P + F +++ Q H+ + + GH + +G++ L E A D L E VF V GAI+ FE R++ S AKKE + +K R E LE L++++ +E+ Sbjct: 3 LPLLKLGTLALRTLSKPIAARLKKEAGLHPKFRNFIISIAQANHRITTTMQRRIYGHATDVGIRPLNEEKAVQAAVDLLGELFVFSVAGAIVVFEVQRNSRSEAKKEELRRQEMEKLRLRDEALEKEIKGLQSKIQELEQ 142
BLAST of NO19G00540 vs. NCBI_GenBank
Match: KMZ65108.1 (Optic atrophy 3 protein (OPA3) [Zostera marina]) HSP 1 Score: 85.1 bits (209), Expect = 5.900e-13 Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 0 Query: 4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH-KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFRE---DLEARFLVLEARVDAMEE 140 LPL KLG LA+KT++KP+A R+K EA P + ++ Q H+ + I GH ++ ++ L E A D + E VF VGGA++ FE RS S A+KEA ++ + R+ +LE R LVLE V +++ Sbjct: 3 LPLAKLGTLALKTISKPIANRLKTEAGRHPEFRNLIISFAQSNHRVTTKIQRRLYGHATNVEIRPLNEEKAVQAATDLIGEVFVFLVGGAVVIFEVQRSARSEARKEAMRKVELEGMRQNDLELEKRVLVLEQGVAQLQK 142
BLAST of NO19G00540 vs. NCBI_GenBank
Match: XP_008606204.1 (hypothetical protein SDRG_02396 [Saprolegnia diclina VS20] >EQC40505.1 hypothetical protein SDRG_02396 [Saprolegnia diclina VS20]) HSP 1 Score: 84.3 bits (207), Expect = 1.000e-12 Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 0 Query: 1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH---KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQ 141 MV +PL K+GGL ++TL KPVAK++K A +P L +VGQ H I +S G K++ +KEL A +G++FL ETL+F V + +EY RS+ SA KE + + +E RF LE + +M+++ Sbjct: 1 MVAIPLFKVGGLLLRTLTKPVAKQLKQSAKTKPWLNSVCRSVGQHQHAIGVRIQMSMQGQIHWKTIQIKELPADQAVDKGSEFLGETLIFSVAVIVAWYEYDRSSRSAKAKELKANEREFQRLQQIEMRFRNLEHLMASMQDE 143 The following BLAST results are available for this feature:
BLAST of NO19G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G00540 ID=NO19G00540|Name=NO19G00540|organism=Nannochloropsis oceanica|type=gene|length=1803bpback to top protein sequence of NO19G00540.1 >NO19G00540.1-protein ID=NO19G00540.1-protein|Name=NO19G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bpback to top Synonyms
Publications
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