NO19G00540, NO19G00540 (gene) Nannochloropsis oceanica

Overview
NameNO19G00540
Unique NameNO19G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1803
Alignment locationchr19:209619..211421 -

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Properties
Property NameValue
DescriptionOptic atrophy 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:209619..211421 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010754OPA3-like
Homology
BLAST of NO19G00540 vs. NCBI_GenBank
Match: EWM23560.1 (Optic atrophy 3 [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 2.900e-68
Identity = 145/182 (79.67%), Postives = 153/182 (84.07%), Query Frame = 0
Query:    1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARLFXXXXXXXXXXXXXXXITLEDLPPAPRFADVETL 183
            M GLPLLKLGGLAIKTLAKPVAKR+K+EA +RP LK  YVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSN SAA+KEAAKEA RQKFREDLEARFL LEARV  MEE+QQAGW+ +F               + LEDLP AP FADVETL
Sbjct:    1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVF-----PGSKGKEGRRVALEDLPEAPHFADVETL 177          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: XP_002288298.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED93734.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.9 bits (250), Expect = 1.000e-17
Identity = 61/141 (43.26%), Postives = 88/141 (62.41%), Query Frame = 0
Query:    6 LLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFRED---LEARFLVLEARVDAMEEQQQA 144
            L KLG L IKTL+KPV+KR++ +  + P  +   + VGQ TH  +  +TI S+G+K   +  LE+  A +RGAD LSET +F V G I+ +EY RS+    KKE   EA  QK R+D   L+A+ + L+ R+ A+EE  +A
Sbjct:    1 LAKLGSLLIKTLSKPVSKRLRHQMIKYPTSRDALIWVGQSTHAITTRMTIWSSGYKVRSISRLEDEEALSRGADLLSETFIFAVSGGIVVYEYHRSSEKEKKKE---EARLQKIRDDATRLQAKLISLDTRLSALEEYAKA 138          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: CEP01039.1 (hypothetical protein PBRA_008352 [Plasmodiophora brassicae])

HSP 1 Score: 94.7 bits (234), Expect = 7.400e-16
Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = 0
Query:    8 KLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARL 149
            K+G LAI+TLAKPV+K    ++ + P  +  +V  GQW H+          GH+   VK +EEA A   GAD +SE ++F V G ++TFE  RS+ SA   +A +E   +  +  +EARF  LE  V  M ++Q+A  A +
Sbjct:   10 KIGALAIRTLAKPVSKTFVSQSQQSPFWRSVFVRYGQWHHRQQYKFQARLLGHRVKNVKPIEEAKALELGADVISEYMIFAVAGIVITFEIYRSSRSAEAAKADQERQARADKASVEARFAFLEREVARMHDEQEAALAAI 150          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: OQR95243.1 (hypothetical protein ACHHYP_00157 [Achlya hypogyna])

HSP 1 Score: 88.2 bits (217), Expect = 7.000e-14
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 0
Query:    1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH---KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQA 144
            MV +PL K+GGL ++TL KPVAK++K  A  +P L     +VGQ+ H     I +S  G    K++ +K+L    A  +G++FL ETL+F V   +  +EY RS+ S+ +KE        + ++ +E RF  LE  + +ME++  A
Sbjct:    1 MVAIPLFKVGGLLLRTLTKPVAKQLKQSAKTKPWLNSVCRSVGQYQHVVGVRIQMSMQGQIHWKTIQIKDLPADQAVDKGSEFLGETLIFSVAVIVAWYEYDRSSRSSKEKELKANEREFQRQQQIEMRFRTLEHLMASMEDEISA 146          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: ADE75998.1 (unknown [Picea sitchensis])

HSP 1 Score: 87.8 bits (216), Expect = 9.100e-14
Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH-KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAK----EAGRQKFREDLEARFLVLEARVDAME 139
            LPL KLG LA+KTL+KP+A R+K +AA  P  +   + + Q  H+ S  +     GH  ++ ++ L+E  A     D L E  +F VGGA + FE  RS+ S A+KE A+    EA RQ+  +DL    ++L+ RVD +E
Sbjct:    3 LPLFKLGTLALKTLSKPIASRLKTQAAHHPRFRSLIINLAQTNHKFSTQLQRRIYGHATNVAIRPLDEEKAVQAFTDLLGEVFIFSVGGAAVIFEVQRSSRSEARKEEARKQEFEALRQR-EDDLARELVLLKQRVDELE 141          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: GAX24971.1 (hypothetical protein FisN_2Lh247 [Fistulifera solaris])

HSP 1 Score: 87.8 bits (216), Expect = 9.100e-14
Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQ 141
            LP+ KL  L +KTLAKP++KR+K E +     +R  + +GQ +HQ S+ +TI SAG+K   +K LE+  A   GA+F+ E  +  V G  +  EY RS     +KE  +    +  R+ L+A    L+ RV  +E Q
Sbjct:    5 LPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKAAKAERDALQAALHTLDLRVKELERQ 141          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: GAX12416.1 (hypothetical protein FisN_2Hh247 [Fistulifera solaris])

HSP 1 Score: 87.0 bits (214), Expect = 1.600e-13
Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQ 141
            LP+ KL  L +KTLAKP++KR+K E +     +R  + +GQ +HQ S+ +TI SAG+K   +K LE+  A   GA+F+ E  +  V G  +  EY RS     +KE  +    +  R+ L+A    L+ RV  +E Q
Sbjct:    5 LPVTKLASLFVKTLAKPLSKRIKHEFSRYAATQRVLIGIGQASHQVSSRMTIWSAGYKVREIKPLEDENAMKTGAEFIGEFFILLVSGTTVVLEYNRSKAKDLEKEEKRIKASKAERDALQAALHKLDLRVKELERQ 141          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: XP_006361044.1 (PREDICTED: optic atrophy 3 protein homolog [Solanum tuberosum])

HSP 1 Score: 85.9 bits (211), Expect = 3.500e-13
Identity = 52/140 (37.14%), Postives = 79/140 (56.43%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKS-LGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFR---EDLEARFLVLEARVDAMEE 140
            LPLLKLG LA++TL+KP+A R+K EA   P  + F +++ Q  H+ +  +     GH + +G++ L E  A     D L E  VF V GAI+ FE  R++ S AKKE  +    +K R   E LE     L++++  +E+
Sbjct:    3 LPLLKLGTLALRTLSKPIAARLKKEAGLHPKFRNFIISIAQANHRITTTMQRRIYGHATDVGIRPLNEEKAVQAAVDLLGELFVFSVAGAIVVFEVQRNSRSEAKKEELRRQEMEKLRLRDEALEKEIKGLQSKIQELEQ 142          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: KMZ65108.1 (Optic atrophy 3 protein (OPA3) [Zostera marina])

HSP 1 Score: 85.1 bits (209), Expect = 5.900e-13
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 0
Query:    4 LPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH-KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFRE---DLEARFLVLEARVDAMEE 140
            LPL KLG LA+KT++KP+A R+K EA   P  +   ++  Q  H+ +  I     GH  ++ ++ L E  A     D + E  VF VGGA++ FE  RS  S A+KEA ++   +  R+   +LE R LVLE  V  +++
Sbjct:    3 LPLAKLGTLALKTISKPIANRLKTEAGRHPEFRNLIISFAQSNHRVTTKIQRRLYGHATNVEIRPLNEEKAVQAATDLIGEVFVFLVGGAVVIFEVQRSARSEARKEAMRKVELEGMRQNDLELEKRVLVLEQGVAQLQK 142          
BLAST of NO19G00540 vs. NCBI_GenBank
Match: XP_008606204.1 (hypothetical protein SDRG_02396 [Saprolegnia diclina VS20] >EQC40505.1 hypothetical protein SDRG_02396 [Saprolegnia diclina VS20])

HSP 1 Score: 84.3 bits (207), Expect = 1.000e-12
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 0
Query:    1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGH---KSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQ 141
            MV +PL K+GGL ++TL KPVAK++K  A  +P L     +VGQ  H     I +S  G    K++ +KEL    A  +G++FL ETL+F V   +  +EY RS+ SA  KE        +  + +E RF  LE  + +M+++
Sbjct:    1 MVAIPLFKVGGLLLRTLTKPVAKQLKQSAKTKPWLNSVCRSVGQHQHAIGVRIQMSMQGQIHWKTIQIKELPADQAVDKGSEFLGETLIFSVAVIVAWYEYDRSSRSAKAKELKANEREFQRLQQIEMRFRNLEHLMASMQDE 143          
The following BLAST results are available for this feature:
BLAST of NO19G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23560.12.900e-6879.67Optic atrophy 3 [Nannochloropsis gaditana][more]
XP_002288298.11.000e-1743.26predicted protein, partial [Thalassiosira pseudona... [more]
CEP01039.17.400e-1638.30hypothetical protein PBRA_008352 [Plasmodiophora b... [more]
OQR95243.17.000e-1436.30hypothetical protein ACHHYP_00157 [Achlya hypogyna... [more]
ADE75998.19.100e-1439.29unknown [Picea sitchensis][more]
GAX24971.19.100e-1437.23hypothetical protein FisN_2Lh247 [Fistulifera sola... [more]
GAX12416.11.600e-1337.23hypothetical protein FisN_2Hh247 [Fistulifera sola... [more]
XP_006361044.13.500e-1337.14PREDICTED: optic atrophy 3 protein homolog [Solanu... [more]
KMZ65108.15.900e-1337.14Optic atrophy 3 protein (OPA3) [Zostera marina][more]
XP_008606204.11.000e-1237.06hypothetical protein SDRG_02396 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00540.1NO19G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|275618gene_9732Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100503g1gene6895Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00540.1NO19G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00540 ID=NO19G00540|Name=NO19G00540|organism=Nannochloropsis oceanica|type=gene|length=1803bp
CGCACCCCTTCAATTTGCGGATAGACACACACAAAACAAAGCCAAACCAT
GCGCGCACACACTTACAATACGCATAGGGCCAAGGCTGTAGATAAAGGTG
TTTATGCGAATTCCGCGTGAATGCCTTGTCGGGTTGCAATCTCTTTTTGG
AGCATGTGCGTGATGGCGCAAGCAAGAGTAGCAGCAACATCAAGTACACG
CATATTTATCACCACAGCAAGCAACAGATTTCAAATCTAAAGCAGATTTA
TCACTACTTGTTACATTTAACCACCAACCACTCACCTTCCTCTTCTACTT
TCATACCCAGCATATCATCAGGCACCGTTGAAATCGGCCGCGGCCCCTGG
GACAATCACGCAATAGCCCCTAGCTTGTTCAACCACTCCAGCCACATGTC
CTTCTCCGTCTCGACCTGTCATTGTCCCTAGTAAAATCCAGTCCATCCCC
AACATAACCACACCATGGTCGGCCTGCCCCTCCTCAAGCTCGGGGGTCTG
GCCATCAAGACCCTTGCGAAGCCCGTAGCCAAGCGGATGAAGGTCGAGGC
TGCCGAGCGACCGGGCCTCAAGAGATTTTATGTTACCGTTGGCCAATGGA
CCCATCAAGCCTCCGCGTGGATCACCATCTCCTCCGCGGGGCATAAATCC
CTGGGCGTGAAGGAATTGGAAGAAGCCGCAGCGTTTGCACGAGGGGCAGA
TTTCTTATCGGAGACTCTGGTGTTCTTCGTGGGTGGTGCCATCTTGACGT
TCGAATATACACGGTCCAACATGAGCGCGGCGAAAAAAGAGGCAGCGAAG
GAAGCAGGGCGCCAGAAATTCAGAGAAGATCTAGAGGCACGGTTTTTGGT
GCTGGAAGCAAGGGTAGATGCGATGGAAGAGCAGCAACAAGCAGGGTGGG
CGAGGCTGTTTGCGGGCGGAGGGGGAGGGGGAAAGGGAGGGAGGGAGGGA
GGGAGGATTACCTTAGAGGACTTGCCACCGGCGCCCCGGTTTGCGGATGT
CGAGACATTGAAACAGAAGAAAAAGAGGCAGGCGGCGGATGCAGCAGCAA
TGTCCGCGGTTGCAGCAGTAGCGGCAACCGAGATGAAGGACAAGGAGATT
GGAAAAAGCGGGGGGGGAGGGCAAAATTCATCTGTTTCCTCCTCCTCCTC
CTCCTCCTCCTCTTTTCCCCCCTCTTCTTTCTCACCGATACCAAAAGGGA
AGGTGCTGCAAAGTAGCATGGTGAATACGAGCGGCAGTAGCGGTAGCCGT
CCTCCCTCACACCATTCGTCTGAAGAGACGATGGTCGACACGCCGAGGGA
GGGGAAGGACGAGGAGGAAGGGAGAAAGGGAGGGGCGGGAGGAGGGAGAA
AGGATCGTCCATGGTGGTGGACCCGAGTGTGGAGGTCTGTCCGAGGAGGA
GGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGAAGAGGTAATGGTACC
AACAGCAGGTGCAGCAGCTGAAGAAGTAAGGCAAGAGGCCGCACTTAAGA
CCAACAACAGCAGCAGCAATATTGCCACCACTACCACTACCACTAGCGGC
AGCAGCAGCACAGCTACAAAGCTCGCTGTGTCAACGGTAAGGATTAAGGT
GGTGAAGGTGACTCCTTTAGGCGTAGACAGAGAATTTCTCTTCCTCTACT
TTCCAACGATCTTCCAACCCGCCACTCCACGGGTGCGTGGAGAGAAGGGA
AAAAGGAGGAAGGAAGGGAGGGAGGGGGAGGGAAAGGGGGAGGGAGAAGA
GGAGGAGGAGGGGCGTTGGTGGAGGCATGTGGTCGTTTAAGTGGAGGGAG
GGA
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protein sequence of NO19G00540.1

>NO19G00540.1-protein ID=NO19G00540.1-protein|Name=NO19G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQAS
AWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTR
SNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARLFA
GGGGGGKGGREGGRITLEDLPPAPRFADVETLKQKKKRQAADAAAMSAVA
AVAATEMKDKEIGKSGGGGQNSSVSSSSSSSSSFPPSSFSPIPKGKVLQS
SMVNTSGSSGSRPPSHHSSEETMVDTPREGKDEEEGRKGGAGGGRKDRPW
WWTRVWRSVRGGGGGGGGGGGGGEEVMVPTAGAAAEEVRQEAALKTNNSS
SNIATTTTTTSGSSSTATKLAVSTVRIKVVKVTPLGVDREFLFLYFPTIF
QPATPRVRGEKGKRRKEGREGEGKGEGEEEEEGRWWRHVVV*
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Synonyms
Publications