NO19G00540.1, NO19G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00540.1
Unique NameNO19G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1803
Alignment locationchr19:209619..211421 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:209619..211421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00540.1 vs.
Match: EWM23560.1 (Optic atrophy 3 [Nannochloropsis gaditana])

HSP 1 Score: 260.8 bits (665), Expect = 7.800e-66
Identity = 190/343 (55.39%), Postives = 213/343 (62.10%), Query Frame = 0 
Query:    1 MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARLFAGGGGGGKGGREGGRITLEDLPPAPRFADVETLKQKKKRQAADAAAMSAVA-AVAATEMKDKEIGKSGGGGQNSSVSSSSSSSSSFPPSSFS-----------------PIPKGKVLQSSMVNTSGSSGSRPPSHHSSEETMVDTPREGKDEEEGRKGGAGGGRKDRPWWWTRVWRSVRGGGGGGGGGGGGGEE 326
            M GLPLLKLGGLAIKTLAKPVAKR+K+EA +RP LK  YVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSN SAA+KEAAKEA RQKFREDLEARFL LEARV  MEE+QQAGW+ +F      G  G+EG R+ LEDLP AP FADVETLK+KK  +        AV       E+K++ +G+     Q  +  SS   S    P   S                 P+P+ KV+Q          G R      S E      REG   E+ RK     G+K+ P          RG G  GG G G   E
Sbjct:    1 MAGLPLLKLGGLAIKTLAKPVAKRLKIEATKRPTLKNLYVTVGQWTHQASAWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTRSNASAAQKEAAKEASRQKFREDLEARFLSLEARVIRMEERQQAGWSSVFP-----GSKGKEGRRVALEDLPEAPHFADVETLKRKKNSRRRKRWLEEAVGWRRRREEVKEESVGEP---KQAQTQRSSPRLSQRQHPGMISHRQKRDCPKREVLWIDRPLPRPKVVQPLSPPLPALPGRRDQLPTGSWE----GGREG-GREQRRK-----GKKEGP------LHKNRGAGEVGGHGRGASSE 319
The following BLAST results are available for this feature:
BLAST of NO19G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23560.17.800e-6655.39Optic atrophy 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00540NO19G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00540.1NO19G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00540.1.cds1NO19G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00540.1 ID=NO19G00540.1|Name=NO19G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp
CGCACCCCTTCAATTTGCGGATAGACACACACAAAACAAAGCCAAACCAT
GCGCGCACACACTTACAATACGCATAGGGCCAAGGCTGTAGATAAAGGTG
TTTATGCGAATTCCGCGTGAATGCCTTGTCGGGTTGCAATCTCTTTTTGG
AGCATGTGCGTGATGGCGCAAGCAAGAGTAGCAGCAACATCAAGTACACG
CATATTTATCACCACAGCAAGCAACAGATTTCAAATCTAAAGCAGATTTA
TCACTACTTGTTACATTTAACCACCAACCACTCACCTTCCTCTTCTACTT
TCATACCCAGCATATCATCAGGCACCGTTGAAATCGGCCGCGGCCCCTGG
GACAATCACGCAATAGCCCCTAGCTTGTTCAACCACTCCAGCCACATGTC
CTTCTCCGTCTCGACCTGTCATTGTCCCTAGTAAAATCCAGTCCATCCCC
AACATAACCACACCATGGTCGGCCTGCCCCTCCTCAAGCTCGGGGGTCTG
GCCATCAAGACCCTTGCGAAGCCCGTAGCCAAGCGGATGAAGGTCGAGGC
TGCCGAGCGACCGGGCCTCAAGAGATTTTATGTTACCGTTGGCCAATGGA
CCCATCAAGCCTCCGCGTGGATCACCATCTCCTCCGCGGGGCATAAATCC
CTGGGCGTGAAGGAATTGGAAGAAGCCGCAGCGTTTGCACGAGGGGCAGA
TTTCTTATCGGAGACTCTGGTGTTCTTCGTGGGTGGTGCCATCTTGACGT
TCGAATATACACGGTCCAACATGAGCGCGGCGAAAAAAGAGGCAGCGAAG
GAAGCAGGGCGCCAGAAATTCAGAGAAGATCTAGAGGCACGGTTTTTGGT
GCTGGAAGCAAGGGTAGATGCGATGGAAGAGCAGCAACAAGCAGGGTGGG
CGAGGCTGTTTGCGGGCGGAGGGGGAGGGGGAAAGGGAGGGAGGGAGGGA
GGGAGGATTACCTTAGAGGACTTGCCACCGGCGCCCCGGTTTGCGGATGT
CGAGACATTGAAACAGAAGAAAAAGAGGCAGGCGGCGGATGCAGCAGCAA
TGTCCGCGGTTGCAGCAGTAGCGGCAACCGAGATGAAGGACAAGGAGATT
GGAAAAAGCGGGGGGGGAGGGCAAAATTCATCTGTTTCCTCCTCCTCCTC
CTCCTCCTCCTCTTTTCCCCCCTCTTCTTTCTCACCGATACCAAAAGGGA
AGGTGCTGCAAAGTAGCATGGTGAATACGAGCGGCAGTAGCGGTAGCCGT
CCTCCCTCACACCATTCGTCTGAAGAGACGATGGTCGACACGCCGAGGGA
GGGGAAGGACGAGGAGGAAGGGAGAAAGGGAGGGGCGGGAGGAGGGAGAA
AGGATCGTCCATGGTGGTGGACCCGAGTGTGGAGGTCTGTCCGAGGAGGA
GGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGAAGAGGTAATGGTACC
AACAGCAGGTGCAGCAGCTGAAGAAGTAAGGCAAGAGGCCGCACTTAAGA
CCAACAACAGCAGCAGCAATATTGCCACCACTACCACTACCACTAGCGGC
AGCAGCAGCACAGCTACAAAGCTCGCTGTGTCAACGGTAAGGATTAAGGT
GGTGAAGGTGACTCCTTTAGGCGTAGACAGAGAATTTCTCTTCCTCTACT
TTCCAACGATCTTCCAACCCGCCACTCCACGGGTGCGTGGAGAGAAGGGA
AAAAGGAGGAAGGAAGGGAGGGAGGGGGAGGGAAAGGGGGAGGGAGAAGA
GGAGGAGGAGGGGCGTTGGTGGAGGCATGTGGTCGTTTAAGTGGAGGGAG
GGA
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protein sequence of NO19G00540.1

>NO19G00540.1-protein ID=NO19G00540.1-protein|Name=NO19G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQAS
AWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTR
SNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARLFA
GGGGGGKGGREGGRITLEDLPPAPRFADVETLKQKKKRQAADAAAMSAVA
AVAATEMKDKEIGKSGGGGQNSSVSSSSSSSSSFPPSSFSPIPKGKVLQS
SMVNTSGSSGSRPPSHHSSEETMVDTPREGKDEEEGRKGGAGGGRKDRPW
WWTRVWRSVRGGGGGGGGGGGGGEEVMVPTAGAAAEEVRQEAALKTNNSS
SNIATTTTTTSGSSSTATKLAVSTVRIKVVKVTPLGVDREFLFLYFPTIF
QPATPRVRGEKGKRRKEGREGEGKGEGEEEEEGRWWRHVVV*
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mRNA from alignment at chr19:209619..211421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00540.1 ID=NO19G00540.1|Name=NO19G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp|location=Sequence derived from alignment at chr19:209619..211421- (Nannochloropsis oceanica)
CGCACCCCTTCAATTTGCGGATAGACACACACAAAACAAAGCCAAACCAT
GCGCGCACACACTTACAATACGCATAGGGCCAAGGCTGTAGATAAAGGTG
TTTATGCGAATTCCGCGTGAATGCCTTGTCGGGTTGCAATCTCTTTTTGG
AGCATGTGCGTGATGGCGCAAGCAAGAGTAGCAGCAACATCAAGTACACG
CATATTTATCACCACAGCAAGCAACAGATTTCAAATCTAAAGCAGATTTA
TCACTACTTGTTACATTTAACCACCAACCACTCACCTTCCTCTTCTACTT
TCATACCCAGCATATCATCAGGCACCGTTGAAATCGGCCGCGGCCCCTGG
GACAATCACGCAATAGCCCCTAGCTTGTTCAACCACTCCAGCCACATGTC
CTTCTCCGTCTCGACCTGTCATTGTCCCTAGTAAAATCCAGTCCATCCCC
AACATAACCACACCATGGTCGGCCTGCCCCTCCTCAAGCTCGGGGGTCTG
GCCATCAAGACCCTTGCGAAGCCCGTAGCCAAGCGGATGAAGGTCGAGGC
TGCCGAGCGACCGGGCCTCAAGAGATTTTATGTTACCGTTGGCCAATGGA
CCCATCAAGCCTCCGCGTGGATCACCATCTCCTCCGCGGGGCATAAATCC
CTGGGCGTGAAGGAATTGGAAGAAGCCGCAGCGTTTGCACGAGGGGCAGA
TTTCTTATCGGAGACTCTGGTGTTCTTCGTGGGTGGTGCCATCTTGACGT
TCGAATATACACGGTCCAACATGAGCGCGGCGAAAAAAGAGGCAGCGAAG
GAAGCAGGGCGCCAGAAATTCAGAGAAGATCTAGAGGCACGGTTTTTGGT
GCTGGAAGCAAGGGTAGATGCGATGGAAGAGCAGCAACAAGCAGGGTGGG
CGAGGCTGTTTGCGGGCGGAGGGGGAGGGGGAAAGGGAGGGAGGGAGGGA
GGGAGGATTACCTTAGAGGACTTGCCACCGGCGCCCCGGTTTGCGGATGT
CGAGACATTGAAACAGAAGAAAAAGAGGCAGGCGGCGGATGCAGCAGCAA
TGTCCGCGGTTGCAGCAGTAGCGGCAACCGAGATGAAGGACAAGGAGATT
GGAAAAAGCGGGGGGGGAGGGCAAAATTCATCTGTTTCCTCCTCCTCCTC
CTCCTCCTCCTCTTTTCCCCCCTCTTCTTTCTCACCGATACCAAAAGGGA
AGGTGCTGCAAAGTAGCATGGTGAATACGAGCGGCAGTAGCGGTAGCCGT
CCTCCCTCACACCATTCGTCTGAAGAGACGATGGTCGACACGCCGAGGGA
GGGGAAGGACGAGGAGGAAGGGAGAAAGGGAGGGGCGGGAGGAGGGAGAA
AGGATCGTCCATGGTGGTGGACCCGAGTGTGGAGGTCTGTCCGAGGAGGA
GGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGAAGAGGTAATGGTACC
AACAGCAGGTGCAGCAGCTGAAGAAGTAAGGCAAGAGGCCGCACTTAAGA
CCAACAACAGCAGCAGCAATATTGCCACCACTACCACTACCACTAGCGGC
AGCAGCAGCACAGCTACAAAGCTCGCTGTGTCAACGGTAAGGATTAAGGT
GGTGAAGGTGACTCCTTTAGGCGTAGACAGAGAATTTCTCTTCCTCTACT
TTCCAACGATCTTCCAACCCGCCACTCCACGGGTGCGTGGAGAGAAGGGA
AAAAGGAGGAAGGAAGGGAGGGAGGGGGAGGGAAAGGGGGAGGGAGAAGA
GGAGGAGGAGGGGCGTTGGTGGAGGCATGTGGTCGTTTAAGTGGAGGGAG
GGA
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Coding sequence (CDS) from alignment at chr19:209619..211421-

>NO19G00540.1 ID=NO19G00540.1|Name=NO19G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr19:209619..211421- (Nannochloropsis oceanica)
ATGGTCGGCCTGCCCCTCCTCAAGCTCGGGGGTCTGGCCATCAAGACCCT
TGCGAAGCCCGTAGCCAAGCGGATGAAGGTCGAGGCTGCCGAGCGACCGG
GCCTCAAGAGATTTTATGTTACCGTTGGCCAATGGACCCATCAAGCCTCC
GCGTGGATCACCATCTCCTCCGCGGGGCATAAATCCCTGGGCGTGAAGGA
ATTGGAAGAAGCCGCAGCGTTTGCACGAGGGGCAGATTTCTTATCGGAGA
CTCTGGTGTTCTTCGTGGGTGGTGCCATCTTGACGTTCGAATATACACGG
TCCAACATGAGCGCGGCGAAAAAAGAGGCAGCGAAGGAAGCAGGGCGCCA
GAAATTCAGAGAAGATCTAGAGGCACGGTTTTTGGTGCTGGAAGCAAGGG
TAGATGCGATGGAAGAGCAGCAACAAGCAGGGTGGGCGAGGCTGTTTGCG
GGCGGAGGGGGAGGGGGAAAGGGAGGGAGGGAGGGAGGGAGGATTACCTT
AGAGGACTTGCCACCGGCGCCCCGGTTTGCGGATGTCGAGACATTGAAAC
AGAAGAAAAAGAGGCAGGCGGCGGATGCAGCAGCAATGTCCGCGGTTGCA
GCAGTAGCGGCAACCGAGATGAAGGACAAGGAGATTGGAAAAAGCGGGGG
GGGAGGGCAAAATTCATCTGTTTCCTCCTCCTCCTCCTCCTCCTCCTCTT
TTCCCCCCTCTTCTTTCTCACCGATACCAAAAGGGAAGGTGCTGCAAAGT
AGCATGGTGAATACGAGCGGCAGTAGCGGTAGCCGTCCTCCCTCACACCA
TTCGTCTGAAGAGACGATGGTCGACACGCCGAGGGAGGGGAAGGACGAGG
AGGAAGGGAGAAAGGGAGGGGCGGGAGGAGGGAGAAAGGATCGTCCATGG
TGGTGGACCCGAGTGTGGAGGTCTGTCCGAGGAGGAGGAGGAGGAGGGGG
AGGAGGAGGAGGAGGAGGAGAAGAGGTAATGGTACCAACAGCAGGTGCAG
CAGCTGAAGAAGTAAGGCAAGAGGCCGCACTTAAGACCAACAACAGCAGC
AGCAATATTGCCACCACTACCACTACCACTAGCGGCAGCAGCAGCACAGC
TACAAAGCTCGCTGTGTCAACGGTAAGGATTAAGGTGGTGAAGGTGACTC
CTTTAGGCGTAGACAGAGAATTTCTCTTCCTCTACTTTCCAACGATCTTC
CAACCCGCCACTCCACGGGTGCGTGGAGAGAAGGGAAAAAGGAGGAAGGA
AGGGAGGGAGGGGGAGGGAAAGGGGGAGGGAGAAGAGGAGGAGGAGGGGC
GTTGGTGGAGGCATGTGGTCGTTTAA
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Synonyms
Publications