NO19G00440, NO19G00440 (gene) Nannochloropsis oceanica

Overview
NameNO19G00440
Unique NameNO19G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1955
Alignment locationchr19:168581..170535 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:168581..170535 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO19G00440 vs. NCBI_GenBank
Match: EWM23542.1 (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 2.300e-37
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 0
Query:   37 ALHAPLLPSSFSSDEPPLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDCGSWPRVAFTVNDPENVYLLLSQAMAVAK 164
            AL  PLL ++         LYED ++KLT + L++K Y+FP G +K IPLK I+K+SL PLGS WQGQYKHWGMA+DF+RWWPSD+ R  R HFIEVDCG+WP VAFT+ + E+ Y  LSQA+A  +
Sbjct:   45 ALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVR 171          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: EWM23543.1 (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 8.500e-24
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   37 ALHAPLLPSSFSSDEPPLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFI--EVDCGSWPRVAFTVND 148
            AL  PLL ++         LYED ++KLT + L++K Y+FP G +K IPLK I+K+SL PLGS WQGQYKHWGMA+DF+RWWPSD+ R  R   +   V  GS P    ++ND
Sbjct:   45 ALQKPLLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRVGRLWGNVSEGSVPHGFGSLND 157          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_102145222.1 (hypothetical protein [Mycobacterium sp. QGD 101])

HSP 1 Score: 78.6 bits (192), Expect = 2.800e-11
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   52 PPLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC-GSWPRVAFTVNDPENVYLLLSQAM 160
            PP   Y+DG ++L    + ++ Y FP G +K IPL+DI+  +  PLG+ W  +++ WG + D +RW P D+RR  ++  I +D  G++P  AFT +DP++    L + +
Sbjct:    3 PPRQYYDDGLIQLDREAITLRRYHFPSGTSKVIPLRDIRGYTAKPLGT-WLHRFRIWGSS-DLRRWLPLDVRRPLKSTLITLDVPGTFPSPAFTPSDPDDFVAKLDELL 109          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_085136075.1 (hypothetical protein [Mycobacterium hiberniae] >ORV69129.1 hypothetical protein AWC09_13665 [Mycobacterium hiberniae])

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 0
Query:   57 YEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC--GSWPRVAFTVNDPENVYLLLSQAMA 161
            Y+DG + L    + ++ Y FP G AK IPL  I++    PLG M+  +++ WG + D +RW P D+RR  R+  I +D     WPR AFT  DPE    LL +  A
Sbjct:   10 YDDGLVALDRRAITLRRYHFPSGTAKVIPLSAIRRYRTEPLG-MFTHRFRIWGSS-DLRRWLPLDVRRPVRSTLITLDLQGDPWPRPAFTPADPEKFLALLDELRA 113          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_046317318.1 (hypothetical protein [Mycobacterium sp. UM_Kg1])

HSP 1 Score: 73.9 bits (180), Expect = 6.900e-10
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 0
Query:   57 YEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC--GSWPRVAFTVNDPENVYLLLSQAM 160
            Y+DG + L    + ++ Y FP G AK IPL  I++    PLG ++  +++ WG + D +RW P D+RR  R+  I +D     WPR AFT  DPE    LL + +
Sbjct:   10 YDDGLVALDRRAITLRRYHFPSGTAKVIPLSAIRRYRTEPLG-VFTHRFRIWGSS-DLRRWLPLDVRRPVRSTLITLDLQGDPWPRPAFTPADPEKFLALLDELL 112          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_065025126.1 (hypothetical protein [Mycobacterium sinense] >OBK86414.1 hypothetical protein A5648_05650 [Mycobacterium sinense])

HSP 1 Score: 73.9 bits (180), Expect = 6.900e-10
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   57 YEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC--GSWPRVAFTVNDPENVYLLLSQAMAVA 163
            Y+DG + L    + ++ Y FP G +K IPL  I+     PLG++   +++ WG + D +RW P D++R  R+  I +D     WPR AFT  DPE   +LL + +A A
Sbjct:    5 YDDGLIALDGRAITLRRYHFPSGTSKVIPLSAIRGYRAEPLGALTH-RFRLWGSS-DLRRWLPLDIKRPLRSTLITLDLHDNHWPRPAFTPADPETFRVLLDELLAGA 110          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_067775424.1 (MULTISPECIES: hypothetical protein [Mycobacterium] >OBG81036.1 hypothetical protein A5699_09795 [Mycobacterium sp. E802] >OMB93441.1 hypothetical protein A5733_16215 [Mycobacterium sp. NS-7484])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   53 PLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC-GSWPRVAFTVNDPENVYLLLSQAM 160
            P   Y+DG ++L    + ++ Y FP G +K IPL+DI+     PLG +W  +++ WG + D +RW P D+ R  R+  + +D  G +P+ AFT   P+ +   L + +
Sbjct:    4 PRQYYDDGLVQLDREAITLRRYHFPSGTSKVIPLRDIRSFKAEPLG-LWMQRFRLWG-STDLRRWLPLDMHRPLRSILVTLDVPGVYPKPAFTPARPDELIARLDELL 109          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_090517016.1 (hypothetical protein [Mycobacterium neworleansense] >CRZ17534.1 hypothetical protein BN2156_04419 [Mycobacterium neworleansense])

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-9
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   53 PLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC-GSWPRVAFTVNDPENVYLLLSQAM 160
            P   Y+DG ++L    + ++ Y FP G +K IPL+DI+      LG +W  +++ WG + D +RW P D+ R  R+  I +D  G++PR AFT   P+     L + +
Sbjct:    4 PRQYYDDGLIQLDREAITLRRYHFPSGTSKVIPLRDIRSYKAESLG-LWMQRFRLWG-STDLRRWLPLDVHRPLRSTLITLDVPGTYPRPAFTPARPDEFVASLDELL 109          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_044513868.1 (hypothetical protein [Mycobacterium septicum])

HSP 1 Score: 71.2 bits (173), Expect = 4.500e-9
Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   53 PLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC-GSWPRVAFTVNDPENVYLLLSQAM 160
            P   Y+DG ++L    + ++ Y FP G +K IPL+DI+      LG +W  +++ WG + D +RW P D+ R  R+  I +D  G++P+ AFT   P++    L + +
Sbjct:    4 PRQYYDDGLIQLDREAITLRRYHFPSGTSKVIPLRDIRSYKAESLG-LWMQRFRLWG-STDLRRWLPLDVHRPLRSTLITLDVPGTYPKPAFTPARPDDFVASLDELL 109          
BLAST of NO19G00440 vs. NCBI_GenBank
Match: WP_090429878.1 (MULTISPECIES: hypothetical protein [Mycobacterium] >SER06557.1 hypothetical protein SAMN04488583_4165 [Mycobacterium sp. 88mf] >SFF88279.1 hypothetical protein SAMN04488582_104499 [Mycobacterium sp. 455mf])

HSP 1 Score: 70.5 bits (171), Expect = 7.700e-9
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   53 PLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDC-GSWPRVAFTVNDPENVYLLLSQAM 160
            P   Y+DG ++L    + ++ Y FP G +K IPL+DI+      LG +W  +++ WG + D +RW P D+ R  R+  I +D  G++P+ AFT   P+     L + +
Sbjct:    4 PRQYYDDGLIQLDREAITLRRYHFPSGTSKVIPLRDIRSYRAESLG-LWMQRFRLWG-STDLRRWLPLDVHRPLRSTLITLDVPGTYPKPAFTPARPDEFVASLDELL 109          
The following BLAST results are available for this feature:
BLAST of NO19G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23542.12.300e-3757.48hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
EWM23543.18.500e-2451.33hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
WP_102145222.12.800e-1135.78hypothetical protein [Mycobacterium sp. QGD 101][more]
WP_085136075.11.800e-1039.62hypothetical protein [Mycobacterium hiberniae] >OR... [more]
WP_046317318.16.900e-1038.10hypothetical protein [Mycobacterium sp. UM_Kg1][more]
WP_065025126.16.900e-1037.04hypothetical protein [Mycobacterium sinense] >OBK8... [more]
WP_067775424.11.500e-933.33MULTISPECIES: hypothetical protein [Mycobacterium]... [more]
WP_090517016.12.600e-934.26hypothetical protein [Mycobacterium neworleansense... [more]
WP_044513868.14.500e-933.33hypothetical protein [Mycobacterium septicum][more]
WP_090429878.17.700e-933.33MULTISPECIES: hypothetical protein [Mycobacterium]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00440.1NO19G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607000gene_9742Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100339g4gene6908Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00440.1NO19G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00440 ID=NO19G00440|Name=NO19G00440|organism=Nannochloropsis oceanica|type=gene|length=1955bp
ATGGTCCCCCTCTCCTCCTCCTCATCCTCCGCCTCCGCCTCTTCTCCTCC
TCCTCGTCCCTTAACCGCCACCGTCGCTTCCACCCATGCACTTTCTCAGC
CCATACCTGCACTGCACGCACCACTGCTTCCCTCCTCATTTTCCTCCGAC
GAGCCGCCTCTGACTCTCTACGAAGACGGGTATTTGAAGCTCACCCCCAC
AAAGCTTAAAGTGAAGTGCTATTTTTTCCCGTTCGGTTTAGCCAAGACCA
TCCCACTTAAGGACATAAAAAAAgtaagtgaaaagtgggaggagggggag
gatacgtggaaaatgcgttggtggccagggatggaggtggcaaaagatgc
tctgaacctgtactcatccacccactcatcccttccctttttccctccct
cccaacccctcagGTCTCTCTCCTTCCCCTGGGCAGCATGTGGCAAGGCC
AGTATAAGCACTGGGGTATGGCCGTTGATTTTCAACGTTGGTGGCCTAGC
GATTTGAGACGTGCGGGCAGGgtaaggagggagggaaggagggaaggagg
gaaggagggaaggaggggggaaaggacggaaggagggaacaaaagagaaa
agaaaggagaaagatccacgtgtctgatgcctcttctttcctccctcctt
ccctccttccctttgttcagACGCACTTCATCGAGGTCGACTGTGGTTCA
TGGCCGCGGGTGGCCTTCACGGTCAACGATCCAGAAAACGTCTACCTACT
GCTTTCGCAGgtgaggaggagggagtgagggcgggagggagagaggtagg
gagagaggcccctccgatggacgagcctccaaggtgtttggggctcagtg
atcgagtacgagaatgaggttgaccagttgagggaggggggaggaaggaa
tattgtgagagaagaaggaggagttcattcaaagcatacgtacactctca
ccctagGCAATGGCGGTGGCGAAGGCAGTAgtaagaggggaccagcagca
gcagcattagcagcagcaagagggtacccggtagaaatggtgatgatgat
gatgatgatgatgacgaggggaagGAGGGGGAGGAGGAGGAGGAGGAAAT
GGAGGTTGAGGAGGTGGAGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGACGAGGAG
GATGTTGAGGAGGTCGACGAGGAGGATGATGAGGACGAGGAGGAGGAGGA
GATTTAGGAAGGGGTTGGAGAGAAAGAGAAGGAGGAAAATGCTCCGCGGT
TGACGAAATGAAATGATTTAACCAAAGACAAGAAAAAGGAGCGATGGAAA
AGCTGCTGTACATACGCGTGTTTATCACCATATTCTTTACGTGAATATCA
GAAATGCATCATAGAAAGAAAATGAGCGATCGAGTGGGGAAGGGGAGGGC
AGAAACCAGAATAATGAATTTCGGTTAGAGAGAAGGCACACTGATGGGCA
CTAGTGATAATTGTGAGCCGAATTGAAGAAACCCTCCTCATTCCTCTCTC
CTCTTTCCTCCGGGCATCGGGGCTGCTTTCTTCATTCTGCTCTCTCTCAT
GACGTGTTTTTCGTCTCCGCTTGTTATCGTGAGTGAGAGCTCTCCTATTT
CTCTGATTCAATTTATTCTCACGACAAAGTAATGCATACTTATTGCTGTG
GTGATCTCCCTCCTCCTTTCAATATCGATAAGATCCCTCGGAAGTGCGAC
TGGATCGATAGCATCAGCAGCCCCGGGGCCGTTTAACTAAAAACCTAAAC
AGTCGCGGTCAAACAGGTATATTTCCAAAGACAATGAATACGGCGTAGGT
CTCGGGGTCCTACTGCGCCCGCCGCCATGTCACGTGAACAAAAAGGAGCG
TTGGGCCACCGAGGAGGACATTCAACTGCCCCCTGCTGCTTCAACAAGGA
ACGAG
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protein sequence of NO19G00440.1

>NO19G00440.1-protein ID=NO19G00440.1-protein|Name=NO19G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MVPLSSSSSSASASSPPPRPLTATVASTHALSQPIPALHAPLLPSSFSSD
EPPLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSM
WQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDCGSWPRVAFTVNDPEN
VYLLLSQAMAVAKAVEGEEEEEEMEVEEVEVEEEEEEEEEEEEEEEEEEE
EEEVDEEDVEEVDEEDDEDEEEEEI*
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Synonyms
Publications