NO19G00440.1, NO19G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00440.1
Unique NameNO19G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1376
Alignment locationchr19:168581..170535 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:168581..170535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00440.1 vs.
Match: EWM23542.1 (hypothetical protein Naga_100339g4 [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 5.100e-37
Identity = 85/164 (51.83%), Postives = 111/164 (67.68%), Query Frame = 0 
Query:    4 LSSSSSSASASSPPPRPLTATVASTHALSQPIPALHAPLLPSSFSSDEPPLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSMWQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDCGSWPRVAFTVNDPENVYLLLSQAMAVAKAVEG 168
            LSSSSS+A  SS    P T +  + +AL +P       LL ++         LYED ++KLT + L++K Y+FP G +K IPLK I+K+SL PLGS WQGQYKHWGMA+DF+RWWPSD+ R  R HFIEVDCG+WP VAFT+ + E+ Y  LSQA+A  +  +G
Sbjct:   19 LSSSSSAAPPSSNAVVPATYSNLNDNALQKP-------LLDATRPEPVGASILYEDDFIKLTGSSLRIKWYYFPIGASKVIPLKSIQKISLRPLGSTWQGQYKHWGMAIDFKRWWPSDMLRHQRAHFIEVDCGTWPLVAFTLKESEDFYRSLSQAVAAVRTGKG 175
The following BLAST results are available for this feature:
BLAST of NO19G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23542.15.100e-3751.83hypothetical protein Naga_100339g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00440NO19G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00440.1NO19G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00440.1.cds1NO19G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00440.1.cds2NO19G00440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00440.1.cds3NO19G00440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00440.1.cds4NO19G00440.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00440.1.cds5NO19G00440.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00440.1 ID=NO19G00440.1|Name=NO19G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp
ATGGTCCCCCTCTCCTCCTCCTCATCCTCCGCCTCCGCCTCTTCTCCTCC
TCCTCGTCCCTTAACCGCCACCGTCGCTTCCACCCATGCACTTTCTCAGC
CCATACCTGCACTGCACGCACCACTGCTTCCCTCCTCATTTTCCTCCGAC
GAGCCGCCTCTGACTCTCTACGAAGACGGGTATTTGAAGCTCACCCCCAC
AAAGCTTAAAGTGAAGTGCTATTTTTTCCCGTTCGGTTTAGCCAAGACCA
TCCCACTTAAGGACATAAAAAAAGTCTCTCTCCTTCCCCTGGGCAGCATG
TGGCAAGGCCAGTATAAGCACTGGGGTATGGCCGTTGATTTTCAACGTTG
GTGGCCTAGCGATTTGAGACGTGCGGGCAGGACGCACTTCATCGAGGTCG
ACTGTGGTTCATGGCCGCGGGTGGCCTTCACGGTCAACGATCCAGAAAAC
GTCTACCTACTGCTTTCGCAGGCAATGGCGGTGGCGAAGGCAGTAGAGGG
GGAGGAGGAGGAGGAGGAAATGGAGGTTGAGGAGGTGGAGGTGGAGGAGG
AGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGTTGACGAGGAGGATGTTGAGGAGGTCGACGAGGAGGATGA
TGAGGACGAGGAGGAGGAGGAGATTTAGGAAGGGGTTGGAGAGAAAGAGA
AGGAGGAAAATGCTCCGCGGTTGACGAAATGAAATGATTTAACCAAAGAC
AAGAAAAAGGAGCGATGGAAAAGCTGCTGTACATACGCGTGTTTATCACC
ATATTCTTTACGTGAATATCAGAAATGCATCATAGAAAGAAAATGAGCGA
TCGAGTGGGGAAGGGGAGGGCAGAAACCAGAATAATGAATTTCGGTTAGA
GAGAAGGCACACTGATGGGCACTAGTGATAATTGTGAGCCGAATTGAAGA
AACCCTCCTCATTCCTCTCTCCTCTTTCCTCCGGGCATCGGGGCTGCTTT
CTTCATTCTGCTCTCTCTCATGACGTGTTTTTCGTCTCCGCTTGTTATCG
TGAGTGAGAGCTCTCCTATTTCTCTGATTCAATTTATTCTCACGACAAAG
TAATGCATACTTATTGCTGTGGTGATCTCCCTCCTCCTTTCAATATCGAT
AAGATCCCTCGGAAGTGCGACTGGATCGATAGCATCAGCAGCCCCGGGGC
CGTTTAACTAAAAACCTAAACAGTCGCGGTCAAACAGGTATATTTCCAAA
GACAATGAATACGGCGTAGGTCTCGGGGTCCTACTGCGCCCGCCGCCATG
TCACGTGAACAAAAAGGAGCGTTGGGCCACCGAGGAGGACATTCAACTGC
CCCCTGCTGCTTCAACAAGGAACGAG
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protein sequence of NO19G00440.1

>NO19G00440.1-protein ID=NO19G00440.1-protein|Name=NO19G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MVPLSSSSSSASASSPPPRPLTATVASTHALSQPIPALHAPLLPSSFSSD
EPPLTLYEDGYLKLTPTKLKVKCYFFPFGLAKTIPLKDIKKVSLLPLGSM
WQGQYKHWGMAVDFQRWWPSDLRRAGRTHFIEVDCGSWPRVAFTVNDPEN
VYLLLSQAMAVAKAVEGEEEEEEMEVEEVEVEEEEEEEEEEEEEEEEEEE
EEEVDEEDVEEVDEEDDEDEEEEEI*
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mRNA from alignment at chr19:168581..170535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00440.1 ID=NO19G00440.1|Name=NO19G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp|location=Sequence derived from alignment at chr19:168581..170535+ (Nannochloropsis oceanica)
ATGGTCCCCCTCTCCTCCTCCTCATCCTCCGCCTCCGCCTCTTCTCCTCC
TCCTCGTCCCTTAACCGCCACCGTCGCTTCCACCCATGCACTTTCTCAGC
CCATACCTGCACTGCACGCACCACTGCTTCCCTCCTCATTTTCCTCCGAC
GAGCCGCCTCTGACTCTCTACGAAGACGGGTATTTGAAGCTCACCCCCAC
AAAGCTTAAAGTGAAGTGCTATTTTTTCCCGTTCGGTTTAGCCAAGACCA
TCCCACTTAAGGACATAAAAAAAGTAAGTGAAAAGTGGGAGGAGGGGGAG
GATACGTGGAAAATGCGTTGGTGGCCAGGGATGGAGGTGGCAAAAGATGC
TCTGAACCTGTACTCATCCACCCACTCATCCCTTCCCTTTTTCCCTCCCT
CCCAACCCCTCAGGTCTCTCTCCTTCCCCTGGGCAGCATGTGGCAAGGCC
AGTATAAGCACTGGGGTATGGCCGTTGATTTTCAACGTTGGTGGCCTAGC
GATTTGAGACGTGCGGGCAGGGTAAGGAGGGAGGGAAGGAGGGAAGGAGG
GAAGGAGGGAAGGAGGGGGGAAAGGACGGAAGGAGGGAACAAAAGAGAAA
AGAAAGGAGAAAGATCCACGTGTCTGATGCCTCTTCTTTCCTCCCTCCTT
CCCTCCTTCCCTTTGTTCAGACGCACTTCATCGAGGTCGACTGTGGTTCA
TGGCCGCGGGTGGCCTTCACGGTCAACGATCCAGAAAACGTCTACCTACT
GCTTTCGCAGGTGAGGAGGAGGGAGTGAGGGCGGGAGGGAGAGAGGTAGG
GAGAGAGGCCCCTCCGATGGACGAGCCTCCAAGGTGTTTGGGGCTCAGTG
ATCGAGTACGAGAATGAGGTTGACCAGTTGAGGGAGGGGGGAGGAAGGAA
TATTGTGAGAGAAGAAGGAGGAGTTCATTCAAAGCATACGTACACTCTCA
CCCTAGGCAATGGCGGTGGCGAAGGCAGTAGTAAGAGGGGACCAGCAGCA
GCAGCATTAGCAGCAGCAAGAGGGTACCCGGTAGAAATGGTGATGATGAT
GATGATGATGATGACGAGGGGAAGGAGGGGGAGGAGGAGGAGGAGGAAAT
GGAGGTTGAGGAGGTGGAGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGACGAGGAG
GATGTTGAGGAGGTCGACGAGGAGGATGATGAGGACGAGGAGGAGGAGGA
GATTTAGGAAGGGGTTGGAGAGAAAGAGAAGGAGGAAAATGCTCCGCGGT
TGACGAAATGAAATGATTTAACCAAAGACAAGAAAAAGGAGCGATGGAAA
AGCTGCTGTACATACGCGTGTTTATCACCATATTCTTTACGTGAATATCA
GAAATGCATCATAGAAAGAAAATGAGCGATCGAGTGGGGAAGGGGAGGGC
AGAAACCAGAATAATGAATTTCGGTTAGAGAGAAGGCACACTGATGGGCA
CTAGTGATAATTGTGAGCCGAATTGAAGAAACCCTCCTCATTCCTCTCTC
CTCTTTCCTCCGGGCATCGGGGCTGCTTTCTTCATTCTGCTCTCTCTCAT
GACGTGTTTTTCGTCTCCGCTTGTTATCGTGAGTGAGAGCTCTCCTATTT
CTCTGATTCAATTTATTCTCACGACAAAGTAATGCATACTTATTGCTGTG
GTGATCTCCCTCCTCCTTTCAATATCGATAAGATCCCTCGGAAGTGCGAC
TGGATCGATAGCATCAGCAGCCCCGGGGCCGTTTAACTAAAAACCTAAAC
AGTCGCGGTCAAACAGGTATATTTCCAAAGACAATGAATACGGCGTAGGT
CTCGGGGTCCTACTGCGCCCGCCGCCATGTCACGTGAACAAAAAGGAGCG
TTGGGCCACCGAGGAGGACATTCAACTGCCCCCTGCTGCTTCAACAAGGA
ACGAG
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Coding sequence (CDS) from alignment at chr19:168581..170535+

>NO19G00440.1 ID=NO19G00440.1|Name=NO19G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr19:168581..170535+ (Nannochloropsis oceanica)
ATGGTCCCCCTCTCCTCCTCCTCATCCTCCGCCTCCGCCTCTTCTCCTCC
TCCTCGTCCCTTAACCGCCACCGTCGCTTCCACCCATGCACTTTCTCAGC
CCATACCTGCACTGCACGCACCACTGCTTCCCTCCTCATTTTCCTCCGAC
GAGCCGCCTCTGACTCTCTACGAAGACGGGTATTTGAAGCTCACCCCCAC
AAAGCTTAAAGTGAAGTGCTATTTTTTCCCGTTCGGTTTAGCCAAGACCA
TCCCACTTAAGGACATAAAAAAAGTCTCTCTCCTTCCCCTGGGCAGCATG
TGGCAAGGCCAGTATAAGCACTGGGGTATGGCCGTTGATTTTCAACGTTG
GTGGCCTAGCGATTTGAGACGTGCGGGCAGGACGCACTTCATCGAGGTCG
ACTGTGGTTCATGGCCGCGGGTGGCCTTCACGGTCAACGATCCAGAAAAC
GTCTACCTACTGCTTTCGCAGGCAATGGCGGTGGCGAAGGCAGTAGAGGG
GGAGGAGGAGGAGGAGGAAATGGAGGTTGAGGAGGTGGAGGTGGAGGAGG
AGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGTTGACGAGGAGGATGTTGAGGAGGTCGACGAGGAGGATGA
TGAGGACGAGGAGGAGGAGGAGATTTAG
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Synonyms
Publications