NO19G00270, NO19G00270 (gene) Nannochloropsis oceanica

Overview
NameNO19G00270
Unique NameNO19G00270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1879
Alignment locationchr19:113152..115030 -

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Properties
Property NameValue
DescriptionPh domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:113152..115030 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
Homology
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: CBJ27156.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.5 bits (306), Expect = 1.600e-24
Identity = 59/98 (60.20%), Postives = 77/98 (78.57%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITE-EPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLK 114
            ISGYLQKK + G+WQKRWFETN  +LTYYKSK+M KLLAAL+L QVG I++ + + E  +E + GSL +IELN RVYT+KA+  E+A +WV+VL  L+
Sbjct:   10 ISGYLQKKAKTGKWQKRWFETNAHYLTYYKSKKMEKLLAALNLPQVGEIRLVDPDDESYEEDNDGSLFTIELNDRVYTMKASTREEAARWVEVLKVLQ 107
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: GAY01222.1 (Hypothetical protein PINS_009064 [Pythium insidiosum])

HSP 1 Score: 115.2 bits (287), Expect = 2.600e-22
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG 117
            + GYL KKTRDG+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVGTI +  E    D +D   L +IELN RVYT+KA ++E+A  WVDV + +   G
Sbjct:   31 VRGYLFKKTRDGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGTIALLGE----DSSDGPGLFTIELNERVYTIKARSQEEAAFWVDVRSAVASSG 125
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: XP_009536777.1 (hypothetical protein PHYSODRAFT_262765 [Phytophthora sojae] >EGZ07211.1 hypothetical protein PHYSODRAFT_262765 [Phytophthora sojae])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG------SDVMPTSAGN 127
            I GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I + +E    D  D   L +IELN RVYT+KA + ++A  WVD L   + GG       DV     GN
Sbjct:   31 IRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLLQE----DHVDGPGLFTIELNERVYTIKARSHDEAAFWVDALLWRQAGGVVTQKSPDVSKQKVGN 141
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: XP_024582819.1 (hypothetical protein PHYSODRAFT_262765 [Plasmopara halstedii] >CEG46450.1 hypothetical protein PHYSODRAFT_262765 [Plasmopara halstedii])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG-----SDVMPTSAGNT 128
            + GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I + +E    D  D   L +IELN RVYT+K+ + ++A  WVD L   + GG     S  +   AGNT
Sbjct:   31 VRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLLQE----DHVDGPGLFTIELNERVYTIKSRSHDEAAFWVDALLWRQAGGLVTQKSPEIKQKAGNT 141
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: OWZ11868.1 (hypothetical protein PHMEG_00015047 [Phytophthora megakarya])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG------SDVMPTSAGN 127
            I GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I + +E    D  D   L +IELN RVYT+KA + ++A  WVD L   + GG       DV     GN
Sbjct:   31 IRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLLQE----DHVDGPGLFTIELNERVYTIKARSHDEAAFWVDALLWRQAGGLVTQKSPDVSKQKVGN 141
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: POM70884.1 (PH domain-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG------SDVMPTSAGN 127
            I GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I + +E    D  D   L +IELN RVYT+KA + ++A  WVD L   + GG       DV     GN
Sbjct:   31 IRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLLQE----DHVDGPGLFTIELNERVYTIKARSHDEAAFWVDALLWRQAGGLVTQKSPDVSKQKVGN 141
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: CCA19791.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 112.5 bits (280), Expect = 1.700e-21
Identity = 59/90 (65.56%), Postives = 67/90 (74.44%), Query Frame = 0 
Query:   19 GYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDV 109
            GYL KKTRDG+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVGTI +  E    D  D   L +IELN RVYT+KA + E+A  WVDV
Sbjct:  103 GYLFKKTRDGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGTITLLGE----DSTDGPGLFTIELNERVYTIKARSREEAAFWVDV 187
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: XP_008909034.1 (hypothetical protein PPTG_14230 [Phytophthora parasitica INRA-310] >ETI42148.1 hypothetical protein F443_12679 [Phytophthora parasitica P1569] >ETK82167.1 hypothetical protein L915_12401 [Phytophthora parasitica] >ETL35571.1 hypothetical protein L916_12312 [Phytophthora parasitica] >ETL88803.1 hypothetical protein L917_12153 [Phytophthora parasitica] >ETM42047.1 hypothetical protein L914_12235 [Phytophthora parasitica] >ETN05512.1 hypothetical protein PPTG_14230 [Phytophthora parasitica INRA-310] >ETP11873.1 hypothetical protein F441_12640 [Phytophthora parasitica CJ01A1] >ETP40010.1 hypothetical protein F442_12589 [Phytophthora parasitica P10297] >KUG01095.1 hypothetical protein AM587_10008268 [Phytophthora nicotianae])

HSP 1 Score: 112.5 bits (280), Expect = 1.700e-21
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG 117
            I GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I + +E    D  D   L +IELN RVYT+KA + ++A  WVD L   + GG
Sbjct:   31 IRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLLQE----DHVDGPGLFTIELNERVYTIKARSHDEAAFWVDALLWRQAGG 125
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: ETO70754.1 (hypothetical protein F444_12786 [Phytophthora parasitica P1976])

HSP 1 Score: 112.5 bits (280), Expect = 1.700e-21
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG 117
            I GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I + +E    D  D   L +IELN RVYT+KA + ++A  WVD L   + GG
Sbjct:   31 IRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLLQE----DHVDGPGLFTIELNERVYTIKARSHDEAAFWVDALLWRQAGG 125
[Close]
BLAST of NO19G00270 vs. NCBI_GenBank
Match: XP_002904358.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54536.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 112.1 bits (279), Expect = 2.200e-21
Identity = 62/116 (53.45%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGG------SDVMPTSAGN 127
            I GYL KKTR+G+WQKRWFETNGCFLTYYK K+  KLLAAL+L QVG I +     P D  D   L +IELN R+YT+KA + ++A  WVD L   + GG       DV     GN
Sbjct:   31 IRGYLFKKTREGKWQKRWFETNGCFLTYYK-KQGQKLLAALNLPQVGAITLL----PEDHVDGPGLFTIELNERIYTIKARSHDEAAFWVDALLWRQAGGLVTQKSPDVTKQKVGN 141
The following BLAST results are available for this feature:
BLAST of NO19G00270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ27156.11.600e-2460.20conserved unknown protein [Ectocarpus siliculosus][more]
GAY01222.12.600e-2260.00Hypothetical protein PINS_009064 [Pythium insidios... [more]
XP_009536777.11.300e-2154.31hypothetical protein PHYSODRAFT_262765 [Phytophtho... [more]
XP_024582819.11.300e-2153.45hypothetical protein PHYSODRAFT_262765 [Plasmopara... [more]
OWZ11868.11.300e-2154.31hypothetical protein PHMEG_00015047 [Phytophthora ... [more]
POM70884.11.300e-2154.31PH domain-like protein [Phytophthora palmivora var... [more]
CCA19791.11.700e-2165.56conserved hypothetical protein [Albugo laibachii N... [more]
XP_008909034.11.700e-2159.00hypothetical protein PPTG_14230 [Phytophthora para... [more]
ETO70754.11.700e-2159.00hypothetical protein F444_12786 [Phytophthora para... [more]
XP_002904358.12.200e-2153.45conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00270.2NO19G00270.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G00270.1NO19G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|277365gene_9762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00270.2NO19G00270.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G00270.1NO19G00270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00270 ID=NO19G00270|Name=NO19G00270|organism=Nannochloropsis oceanica|type=gene|length=1879bp
CCCTAGAATATCCTCGCAGGGAAAACAGTCAGCTTGTTCTGTCCTCTCCT
CTAAGGAAGAGCAGCGTACGAGCCACCCTCTCACCAGACTCACAACAATG
TCTGAGAAATTATgtacgtgctcctcattcactcgcattctctcttcaat
ccatttactcacccattacctcaaaattctctttaatagATGCAGGCGCC
CTCCCTGGAGATGTTGTTTGTATCAGCGGgtaggtatgtcaatctttgat
gtggataatatctctgtgggtgtaactacatgtgctgcatggattaattt
agcgtccccggatgacgatcagagtatccctgtattgctaatttgacggg
aggctgccggtatcaaatgcttccgatccctccttctctccccttttaac
gtcctccctgcttcctttgcctcctttttccattctattttgtcaccatt
cctccatctttccctccctcccaccctccctcctttggcagGTACCTACA
GAAAAAGACCCGGGACGGCCGGTGGCAAAAGCGTTGGTTTGAGACTAACG
GCTGCTTTCTGACTTACTATAAGgtcaggagggaggaagggaaggggaag
ggagggaggggagggaaggagaaagagtgagggagagggggggggttcaa
aacaattggacatgtattgacatgttacaacacgagggaggctgggaggg
agggaggggagaagggaaaggaagaagcgaaggtgggatgtcttgcaagt
ggaaggagggaagggcagggatttgggaactagggatgggagggtacggt
ggtcgctagcagggcgcctacttgcgtgcctttgaatcaattatcctcct
cctccctattctgcgtgatccattcaccctccctccctccctccctccct
ccctccctccttccctccctccttcttatcggcagTCAAAGAGGATGACC
AAGCTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAATCAC
TGAAGAGCCGGAGCCGGGAGgtaggggggagggagagaaaaagggaagag
gaggaaagaagggattcagagggaggagttgtgtggcaaagcgaaattat
ttgggttctgattatgtatcgaccacgccacttcttgcctccctgcctcc
cttcccccctccctccctccctccctccctccctcccttccctagACGAG
GCCGATATAGGCAGCCTCTTGTCCATCGAATTGAACGGGCGCGTCTACAC
ACTGAAGGCGGCAAACGAAGAGCAGGCGAAGAAGTGGGTGGATGTCTTGA
ACCAGCTCAAGgtgcggagggagggagggaacgagggaacgagggaacga
tgcatgcaagtccaccttgaccgagatattcaacatcctctccctctctc
cctcctttcctctagATTGGCGGAAGTGACGTAATGCCTACCAGTGCCGG
GAATACGGTCACGAGCGGCGTAGAGATTGACGCGGGGGCGGGCGAGACAG
AGTGGAAGgtgaggaggagggagagagagagggaagcagggacgtcaaaa
cgacgcgatagagcgatctggcgaacaaatcaccttattcaaaaaggggt
gaggacatttttgtttgtgtcgagtcgacatgcgacttactttcctctat
cgacacgacgatgttggcacctctcacaaaaacagAAAAAGGTTCATTGC
TGCTGGATTTGTTAATTAGAAGGCTAGCAAAGGGAAGAGCCGATTAAGGA
GAAGAGAAAAGGTGGTGCTGGGAGCGAGGAGGAAATAAGAGATCACAATG
TATTTATTACTTATTCGTGGCAGAAAGGCGAAAGCGGGGTGGCTGCGACT
CGGAGGCAGTGAGAGGAAGAGGGAGGGAG
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protein sequence of NO19G00270.2

>NO19G00270.2-protein ID=NO19G00270.2-protein|Name=NO19G00270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MSEKLYAGALPGDVVCISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRM
TKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEE
QAKKWVDVLNQLKIGGSDVMPTSAGNTVTSGVEIDAGAGETEWKVRRRER
EREAGTSKRRDRAIWRTNHLIQKGVRTFLFVSSRHATYFPLSTRRCWHLS
QKQKKVHCCWIC*
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protein sequence of NO19G00270.1

>NO19G00270.1-protein ID=NO19G00270.1-protein|Name=NO19G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MSEKLYAGALPGDVVCISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRM
TKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEE
QAKKWVDVLNQLKIGGSDVMPTSAGNTVTSGVEIDAGAGETEWKKKVHCC
WIC*
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Synonyms
Publications