NO19G00270.1, NO19G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00270.1
Unique NameNO19G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr19:113152..115030 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:113152..115030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00270.1 vs.
Match: CBJ27156.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 128.6 bits (322), Expect = 1.600e-26
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 0 
Query:   17 ISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRMTKLLAALDLVQVGTIKITE-EPEPGDEADIGSLLSIELNGRVYTLKAANEEQAKKWVDVLNQLKIGGSDVMPTSAGNTVT------SGVEIDAGAGETE---WKKKVHCCWIC 154
            ISGYLQKK + G+WQKRWFETN  +LTYYKSK+M KLLAAL+L QVG I++ + + E  +E + GSL +IELN RVYT+KA+  E+A +WV+VL  L+    +   T+   T +        + +  G        W K+  CC +C
Sbjct:   10 ISGYLQKKAKTGKWQKRWFETNAHYLTYYKSKKMEKLLAALNLPQVGEIRLVDPDDESYEEDNDGSLFTIELNDRVYTMKASTREEAARWVEVLKVLQTMEEEESKTTEDPTASMMRNAQGSIPVTPGTATRSADAWSKEPACCGLC 156
The following BLAST results are available for this feature:
BLAST of NO19G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27156.11.600e-2645.58conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00270NO19G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00270.1NO19G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00270.1.cds1NO19G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00270.1.cds2NO19G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00270.1.cds3NO19G00270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00270.1.cds4NO19G00270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00270.1.cds5NO19G00270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00270.1.cds6NO19G00270.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00270.1.cds7NO19G00270.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00270.1 ID=NO19G00270.1|Name=NO19G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
CCCTAGAATATCCTCGCAGGGAAAACAGTCAGCTTGTTCTGTCCTCTCCT
CTAAGGAAGAGCAGCGTACGAGCCACCCTCTCACCAGACTCACAACAATG
TCTGAGAAATTATATGCAGGCGCCCTCCCTGGAGATGTTGTTTGTATCAG
CGGGTACCTACAGAAAAAGACCCGGGACGGCCGGTGGCAAAAGCGTTGGT
TTGAGACTAACGGCTGCTTTCTGACTTACTATAAGTCAAAGAGGATGACC
AAGCTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAATCAC
TGAAGAGCCGGAGCCGGGAGACGAGGCCGATATAGGCAGCCTCTTGTCCA
TCGAATTGAACGGGCGCGTCTACACACTGAAGGCGGCAAACGAAGAGCAG
GCGAAGAAGTGGGTGGATGTCTTGAACCAGCTCAAGATTGGCGGAAGTGA
CGTAATGCCTACCAGTGCCGGGAATACGGTCACGAGCGGCGTAGAGATTG
ACGCGGGGGCGGGCGAGACAGAGTGGAAGAAAAAGGTTCATTGCTGCTGG
ATTTGTTAATTAGAAGGCTAGCAAAGGGAAGAGCCGATTAAGGAGAAGAG
AAAAGGTGGTGCTGGGAGCGAGGAGGAAATAAGAGATCACAATGTATTTA
TTACTTATTCGTGGCAGAAAGGCGAAAGCGGGGTGGCTGCGACTCGGAGG
CAGTGAGAGGAAGAGGGAGGGAG
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protein sequence of NO19G00270.1

>NO19G00270.1-protein ID=NO19G00270.1-protein|Name=NO19G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MSEKLYAGALPGDVVCISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRM
TKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEE
QAKKWVDVLNQLKIGGSDVMPTSAGNTVTSGVEIDAGAGETEWKKKVHCC
WIC*
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mRNA from alignment at chr19:113152..115030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00270.1 ID=NO19G00270.1|Name=NO19G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr19:113152..115030- (Nannochloropsis oceanica)
CCCTAGAATATCCTCGCAGGGAAAACAGTCAGCTTGTTCTGTCCTCTCCT
CTAAGGAAGAGCAGCGTACGAGCCACCCTCTCACCAGACTCACAACAATG
TCTGAGAAATTATGTACGTGCTCCTCATTCACTCGCATTCTCTCTTCAAT
CCATTTACTCACCCATTACCTCAAAATTCTCTTTAATAGATGCAGGCGCC
CTCCCTGGAGATGTTGTTTGTATCAGCGGGTAGGTATGTCAATCTTTGAT
GTGGATAATATCTCTGTGGGTGTAACTACATGTGCTGCATGGATTAATTT
AGCGTCCCCGGATGACGATCAGAGTATCCCTGTATTGCTAATTTGACGGG
AGGCTGCCGGTATCAAATGCTTCCGATCCCTCCTTCTCTCCCCTTTTAAC
GTCCTCCCTGCTTCCTTTGCCTCCTTTTTCCATTCTATTTTGTCACCATT
CCTCCATCTTTCCCTCCCTCCCACCCTCCCTCCTTTGGCAGGTACCTACA
GAAAAAGACCCGGGACGGCCGGTGGCAAAAGCGTTGGTTTGAGACTAACG
GCTGCTTTCTGACTTACTATAAGGTCAGGAGGGAGGAAGGGAAGGGGAAG
GGAGGGAGGGGAGGGAAGGAGAAAGAGTGAGGGAGAGGGGGGGGGTTCAA
AACAATTGGACATGTATTGACATGTTACAACACGAGGGAGGCTGGGAGGG
AGGGAGGGGAGAAGGGAAAGGAAGAAGCGAAGGTGGGATGTCTTGCAAGT
GGAAGGAGGGAAGGGCAGGGATTTGGGAACTAGGGATGGGAGGGTACGGT
GGTCGCTAGCAGGGCGCCTACTTGCGTGCCTTTGAATCAATTATCCTCCT
CCTCCCTATTCTGCGTGATCCATTCACCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTTCCCTCCCTCCTTCTTATCGGCAGTCAAAGAGGATGACC
AAGCTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAATCAC
TGAAGAGCCGGAGCCGGGAGGTAGGGGGGAGGGAGAGAAAAAGGGAAGAG
GAGGAAAGAAGGGATTCAGAGGGAGGAGTTGTGTGGCAAAGCGAAATTAT
TTGGGTTCTGATTATGTATCGACCACGCCACTTCTTGCCTCCCTGCCTCC
CTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTAGACGAG
GCCGATATAGGCAGCCTCTTGTCCATCGAATTGAACGGGCGCGTCTACAC
ACTGAAGGCGGCAAACGAAGAGCAGGCGAAGAAGTGGGTGGATGTCTTGA
ACCAGCTCAAGGTGCGGAGGGAGGGAGGGAACGAGGGAACGAGGGAACGA
TGCATGCAAGTCCACCTTGACCGAGATATTCAACATCCTCTCCCTCTCTC
CCTCCTTTCCTCTAGATTGGCGGAAGTGACGTAATGCCTACCAGTGCCGG
GAATACGGTCACGAGCGGCGTAGAGATTGACGCGGGGGCGGGCGAGACAG
AGTGGAAGGTGAGGAGGAGGGAGAGAGAGAGGGAAGCAGGGACGTCAAAA
CGACGCGATAGAGCGATCTGGCGAACAAATCACCTTATTCAAAAAGGGGT
GAGGACATTTTTGTTTGTGTCGAGTCGACATGCGACTTACTTTCCTCTAT
CGACACGACGATGTTGGCACCTCTCACAAAAACAGAAAAAGGTTCATTGC
TGCTGGATTTGTTAATTAGAAGGCTAGCAAAGGGAAGAGCCGATTAAGGA
GAAGAGAAAAGGTGGTGCTGGGAGCGAGGAGGAAATAAGAGATCACAATG
TATTTATTACTTATTCGTGGCAGAAAGGCGAAAGCGGGGTGGCTGCGACT
CGGAGGCAGTGAGAGGAAGAGGGAGGGAG
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Coding sequence (CDS) from alignment at chr19:113152..115030-

>NO19G00270.1 ID=NO19G00270.1|Name=NO19G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr19:113152..115030- (Nannochloropsis oceanica)
ATGTCTGAGAAATTATATGCAGGCGCCCTCCCTGGAGATGTTGTTTGTAT
CAGCGGGTACCTACAGAAAAAGACCCGGGACGGCCGGTGGCAAAAGCGTT
GGTTTGAGACTAACGGCTGCTTTCTGACTTACTATAAGTCAAAGAGGATG
ACCAAGCTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAAT
CACTGAAGAGCCGGAGCCGGGAGACGAGGCCGATATAGGCAGCCTCTTGT
CCATCGAATTGAACGGGCGCGTCTACACACTGAAGGCGGCAAACGAAGAG
CAGGCGAAGAAGTGGGTGGATGTCTTGAACCAGCTCAAGATTGGCGGAAG
TGACGTAATGCCTACCAGTGCCGGGAATACGGTCACGAGCGGCGTAGAGA
TTGACGCGGGGGCGGGCGAGACAGAGTGGAAGAAAAAGGTTCATTGCTGC
TGGATTTGTTAA
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Synonyms
Publications