NO19G00140, NO19G00140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO19G00140 vs. NCBI_GenBank
Match: EWM23487.1 (hypothetical protein Naga_100198g3 [Nannochloropsis gaditana]) HSP 1 Score: 382.1 bits (980), Expect = 2.000e-102 Identity = 198/344 (57.56%), Postives = 243/344 (70.64%), Query Frame = 0 Query: 41 LLNWLKRTFQGGEEDLGADKAFASGAVAAANLFPAITDGTNQPPPPVVGPSPPLLDQIRELFATLGLPLSSLAHINDLNANDIILSLSAVMPAKIVHLQVGRVIVVDEVTTLELTNVADSRCPSGAQCITSGKATVSVTVNQEGLSPYNVLIDLGRSTRLKGGYALTCEEIYPLPAARASSVLVSNAPSTEAIEGSKATVAQEDYNVQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385 +LNW QGG D A+KA A+ A N +I + + P + P PPLLDQ+ LFA+LGLP +L+H+++L +I+ LS VMP K +HL+VG VVDE TTLELT V D+RCP GAQCIT GKAT +TV QE + PY + + LGR+ L+ GY ++CEEI P P A SSVLVS +PSTE +EGSK Q +Y V+L V LP ERM GLV+GVLKW K+N M+RGY FS+RRMCFC AT+RPV L V AWS+ V G Y D N VP EALAEYKTVGDLFLLL +AYA NADRVEA++DP+ GYP IYIDQ+AD+ +DD+MYEA ALKI Sbjct: 41 ILNWFAEASQGG-GDQKANKAVEDEAL-AVNSLTSIMKSSGESLPGTIAP-PPLLDQMLTLFASLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLELTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRGYEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKI 381
BLAST of NO19G00140 vs. NCBI_GenBank
Match: PID49134.1 (hypothetical protein CR991_07860 [Proteobacteria bacterium]) HSP 1 Score: 70.9 bits (172), Expect = 1.000e-8 Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 0 Query: 267 KWTKANGMIRGYV-FSERRMCFCRPATLRP--VTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385 KW A G + ++ ++ CFC +RP VT Q G + + Y D E VP +V D+F L AY NA+R++ ++DP GYP+S+YIDQ++ + ++++ Y +KI Sbjct: 156 KWEAALQNSDGQIEYTRQQSCFCLYDVVRPMNVTEQNG---EIIAANYADT-GEAVPENIRKNLASVSDIFDRLYNAYQSNAERIDVSYDPDYGYPSSVYIDQSSMIADEEMSYRISDMKI 272
BLAST of NO19G00140 vs. NCBI_GenBank
Match: PIE00984.1 (hypothetical protein CSA79_01410 [Thiothrix nivea]) HSP 1 Score: 70.1 bits (170), Expect = 1.700e-8 Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = 0 Query: 234 EGSKATVAQEDYNVQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMY 378 E S+ T++Q D V+ + E + + KW +A+ + + R++CFC RP+T+ + V Y D+ VP TV + F L +AY AD ++ +DP GYPAS++IDQ+ + ++++ Y Sbjct: 122 EVSRKTLSQAD--VENINQSKGEVPQAFTDNLQKWQQAD--TGAHQYETRQVCFCPQEVTRPMTV-TELQGRIVNAVYADD-KTPVPDNIRNSLLTVDERFAQLQEAYESGADTIDVQYDPQSGYPASVFIDQSRQIADEEVSY 259
BLAST of NO19G00140 vs. NCBI_GenBank
Match: WP_078923313.1 (hypothetical protein [Thiothrix eikelboomii] >SKA87687.1 hypothetical protein SAMN02745130_02855 [Thiothrix eikelboomii]) HSP 1 Score: 68.2 bits (165), Expect = 6.500e-8 Identity = 49/154 (31.82%), Postives = 77/154 (50.00%), Query Frame = 0 Query: 234 EGSKATVAQEDYN-VQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRP--VTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385 E ++ T+ Q+D + + LPA+ V KW A + ++ + CFC RP +T Q G K V Y D E VP+ T+ + F L AY A+R++AT+DP LGYP+S+YIDQ+ + +++I Y L++ Sbjct: 124 EITRHTLTQKDIDQLNGKTDLPAD----FVASRAKWDAATSDGQTASYTAQSSCFCPEDYTRPMNITEQNG---KIVDATYADT-GEAVPNYIRDGLLTMNERFDQLQDAYLSGAERIDATYDPQLGYPSSVYIDQSFMMADEEISYNIKDLEL 269
BLAST of NO19G00140 vs. NCBI_GenBank
Match: OQX03869.1 (hypothetical protein BWK73_38095 [Thiothrix lacustris]) HSP 1 Score: 65.9 bits (159), Expect = 3.200e-7 Identity = 35/108 (32.41%), Postives = 63/108 (58.33%), Query Frame = 0 Query: 267 KWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDD 375 KW +AN I Y F+ ++ F P LRPV ++V K V+ Y D + + +P++ TV DLF + +A + A++V+ +DP G+P SI+ID+++ + +++ Sbjct: 209 KWQQAN--IDSYSFTLQQGGFRTPDALRPVNIEVSN-GKVVSAVYAD-NGQPLPADMDFNRLTVDDLFKQIDEAISNGAEKVQVEYDPQFGFPTSIFIDRSSMIADEE 312 The following BLAST results are available for this feature:
BLAST of NO19G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G00140 ID=NO19G00140|Name=NO19G00140|organism=Nannochloropsis oceanica|type=gene|length=1342bpback to top protein sequence of NO19G00140.1 >NO19G00140.1-protein ID=NO19G00140.1-protein|Name=NO19G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bpback to top Synonyms
Publications
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