NO19G00140, NO19G00140 (gene) Nannochloropsis oceanica

Overview
NameNO19G00140
Unique NameNO19G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1342
Alignment locationchr19:44831..46172 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:44831..46172 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO19G00140 vs. NCBI_GenBank
Match: EWM23487.1 (hypothetical protein Naga_100198g3 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 2.000e-102
Identity = 198/344 (57.56%), Postives = 243/344 (70.64%), Query Frame = 0
Query:   41 LLNWLKRTFQGGEEDLGADKAFASGAVAAANLFPAITDGTNQPPPPVVGPSPPLLDQIRELFATLGLPLSSLAHINDLNANDIILSLSAVMPAKIVHLQVGRVIVVDEVTTLELTNVADSRCPSGAQCITSGKATVSVTVNQEGLSPYNVLIDLGRSTRLKGGYALTCEEIYPLPAARASSVLVSNAPSTEAIEGSKATVAQEDYNVQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385
            +LNW     QGG  D  A+KA    A+ A N   +I   + +  P  + P PPLLDQ+  LFA+LGLP  +L+H+++L   +I+  LS VMP K +HL+VG   VVDE TTLELT V D+RCP GAQCIT GKAT  +TV QE + PY + + LGR+  L+ GY ++CEEI P P A  SSVLVS +PSTE +EGSK    Q +Y V+L V LP ERM GLV+GVLKW K+N M+RGY FS+RRMCFC  AT+RPV L V AWS+ V G Y D  N  VP EALAEYKTVGDLFLLL +AYA NADRVEA++DP+ GYP  IYIDQ+AD+ +DD+MYEA ALKI
Sbjct:   41 ILNWFAEASQGG-GDQKANKAVEDEAL-AVNSLTSIMKSSGESLPGTIAP-PPLLDQMLTLFASLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLELTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRGYEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKI 381          
BLAST of NO19G00140 vs. NCBI_GenBank
Match: PID49134.1 (hypothetical protein CR991_07860 [Proteobacteria bacterium])

HSP 1 Score: 70.9 bits (172), Expect = 1.000e-8
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 0
Query:  267 KWTKANGMIRGYV-FSERRMCFCRPATLRP--VTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385
            KW  A     G + ++ ++ CFC    +RP  VT Q G   + +   Y D   E VP        +V D+F  L  AY  NA+R++ ++DP  GYP+S+YIDQ++ + ++++ Y    +KI
Sbjct:  156 KWEAALQNSDGQIEYTRQQSCFCLYDVVRPMNVTEQNG---EIIAANYADT-GEAVPENIRKNLASVSDIFDRLYNAYQSNAERIDVSYDPDYGYPSSVYIDQSSMIADEEMSYRISDMKI 272          
BLAST of NO19G00140 vs. NCBI_GenBank
Match: PIE00984.1 (hypothetical protein CSA79_01410 [Thiothrix nivea])

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-8
Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = 0
Query:  234 EGSKATVAQEDYNVQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMY 378
            E S+ T++Q D  V+ +     E      + + KW +A+     + +  R++CFC     RP+T+      + V   Y D+    VP        TV + F  L +AY   AD ++  +DP  GYPAS++IDQ+  + ++++ Y
Sbjct:  122 EVSRKTLSQAD--VENINQSKGEVPQAFTDNLQKWQQAD--TGAHQYETRQVCFCPQEVTRPMTV-TELQGRIVNAVYADD-KTPVPDNIRNSLLTVDERFAQLQEAYESGADTIDVQYDPQSGYPASVFIDQSRQIADEEVSY 259          
BLAST of NO19G00140 vs. NCBI_GenBank
Match: WP_078923313.1 (hypothetical protein [Thiothrix eikelboomii] >SKA87687.1 hypothetical protein SAMN02745130_02855 [Thiothrix eikelboomii])

HSP 1 Score: 68.2 bits (165), Expect = 6.500e-8
Identity = 49/154 (31.82%), Postives = 77/154 (50.00%), Query Frame = 0
Query:  234 EGSKATVAQEDYN-VQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRP--VTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385
            E ++ T+ Q+D + +     LPA+     V    KW  A    +   ++ +  CFC     RP  +T Q G   K V   Y D   E VP+       T+ + F  L  AY   A+R++AT+DP LGYP+S+YIDQ+  + +++I Y    L++
Sbjct:  124 EITRHTLTQKDIDQLNGKTDLPAD----FVASRAKWDAATSDGQTASYTAQSSCFCPEDYTRPMNITEQNG---KIVDATYADT-GEAVPNYIRDGLLTMNERFDQLQDAYLSGAERIDATYDPQLGYPSSVYIDQSFMMADEEISYNIKDLEL 269          
BLAST of NO19G00140 vs. NCBI_GenBank
Match: OQX03869.1 (hypothetical protein BWK73_38095 [Thiothrix lacustris])

HSP 1 Score: 65.9 bits (159), Expect = 3.200e-7
Identity = 35/108 (32.41%), Postives = 63/108 (58.33%), Query Frame = 0
Query:  267 KWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDD 375
            KW +AN  I  Y F+ ++  F  P  LRPV ++V    K V+  Y D + + +P++      TV DLF  + +A +  A++V+  +DP  G+P SI+ID+++ + +++
Sbjct:  209 KWQQAN--IDSYSFTLQQGGFRTPDALRPVNIEVSN-GKVVSAVYAD-NGQPLPADMDFNRLTVDDLFKQIDEAISNGAEKVQVEYDPQFGFPTSIFIDRSSMIADEE 312          
The following BLAST results are available for this feature:
BLAST of NO19G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM23487.12.000e-10257.56hypothetical protein Naga_100198g3 [Nannochloropsi... [more]
PID49134.11.000e-833.06hypothetical protein CR991_07860 [Proteobacteria b... [more]
PIE00984.11.700e-828.47hypothetical protein CSA79_01410 [Thiothrix nivea][more]
WP_078923313.16.500e-831.82hypothetical protein [Thiothrix eikelboomii] >SKA8... [more]
OQX03869.13.200e-732.41hypothetical protein BWK73_38095 [Thiothrix lacust... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL015nonsL015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007695NSK007695Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00140.1NO19G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100198g3gene6959Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00140.1NO19G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00140 ID=NO19G00140|Name=NO19G00140|organism=Nannochloropsis oceanica|type=gene|length=1342bp
ATGCTCCGGCGCCGTCGAAGAAGATCCAGCTCGACCTCGGCATGCGTCCT
GAGCCTGTTTGTGATGGTCATACTCCTTGTCCTGCCCGCTGGAGTCGCCG
CAGCCTCCAAAAAGCAGAGCCTTCTCAACTGGCTCAAGAGAACGTTCCAA
GGTGGTGAGGAGGATCTCGGCGCGGACAAGGCGTTCGCGTCTGGAGCAGT
CGCAGCCGCCAACCTCTTTCCCGCCATTACCGATGGGACAAACCAACCAC
CACCGCCAGTTGTTGGACCATCGCCGCCCCTCCTGGACCAGATCCGCGAG
CTATTCGCGACGCTCGGCTTGCCTCTCAGTTCGTTAGCTCATATCAACGA
CTTGAATGCAAATGATATAATACTGgtacgtagtataatttcacatgctt
tctatatgcacaagtgtcgcaacgacagcctgggactcacacggccgtgc
ccttcacactcgaacacacagAGTCTTTCCGCAGTCATGCCCGCCAAGAT
TGTGCACCTTCAAGTTGGAAGAGTGATAGTCGTGGATGAGgtaagctcca
atgatcgttcctatcacttccaggctttgggctcttgtctaggcacttcg
actcactcgaaccaaaaaattcatctagGTAACCACGCTGGAACTCACAA
ATGTAGCGGACAGCAGATGTCCAAGTGGCGCGCAGTGCATAACAAGTGGC
AAAGCGACAGTGTCTGTGACGGTCAACCAGGAAGGATTGTCCCCATACAA
TGTACTGATTGACTTGGGAAGATCCACCCGTTTAAAGGGAGGATATGCGC
TGACCTGCGAAGAGATATATCCGTTGCCCGCGGCGCGGGCATCCTCCGTG
CTCGTTTCGAATGCCCCATCCACAGAAGCCATCGAGGGATCGAAGGCCAC
CGTGGCACAAGAAGACTATAACGTGCAGCTCATGGTGACTTTGCCCGCGG
AGCGCATGACTGGGCTCGTGGAAGGAGTCTTGAAGTGGACTAAGGCTAAT
GGTATGATCCGGGGCTACGTCTTCAGCGAAAGGCGGATGTGTTTCTGCCG
GCCTGCCACTCTCCGGCCCGTCACCCTCCAGGTGGGGGCCTGGAGCAAAA
CAGTGACGGGCTTCTATAACGATGAGCATAACGAGCAGGTACCATCGGAG
GCCTTGGCGGAGTACAAGACCGTCGGGGACCTGTTCCTCCTCCTGGGTAA
GGCCTACGCCGAAAACGCGGACAGGGTCGAGGCTACATTTGACCCAATAT
TAGGCTACCCCGCGAGTATCTACATTGATCAGACAGCCGATGTGAAAGAA
GATGACATTATGTATGAGGCATATGCCTTAAAGATTTCATAG
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protein sequence of NO19G00140.1

>NO19G00140.1-protein ID=NO19G00140.1-protein|Name=NO19G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MLRRRRRRSSSTSACVLSLFVMVILLVLPAGVAAASKKQSLLNWLKRTFQ
GGEEDLGADKAFASGAVAAANLFPAITDGTNQPPPPVVGPSPPLLDQIRE
LFATLGLPLSSLAHINDLNANDIILSLSAVMPAKIVHLQVGRVIVVDEVT
TLELTNVADSRCPSGAQCITSGKATVSVTVNQEGLSPYNVLIDLGRSTRL
KGGYALTCEEIYPLPAARASSVLVSNAPSTEAIEGSKATVAQEDYNVQLM
VTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQV
GAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEA
TFDPILGYPASIYIDQTADVKEDDIMYEAYALKIS*
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Synonyms
Publications