NO19G00140.1, NO19G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00140.1
Unique NameNO19G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr19:44831..46172 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:44831..46172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00140.1 vs.
Match: EWM23487.1 (hypothetical protein Naga_100198g3 [Nannochloropsis gaditana])

HSP 1 Score: 423.3 bits (1087), Expect = 8.000e-115
Identity = 224/384 (58.33%), Postives = 274/384 (71.35%), Query Frame = 0 
Query:    1 MLRRRRRRSSSTSACVLSLFVMVILLVLPAGVAAASKKQSLLNWLKRTFQGGEEDLGADKAFASGAVAAANLFPAITDGTNQPPPPVVGPSPPLLDQIRELFATLGLPLSSLAHINDLNANDIILSLSAVMPAKIVHLQVGRVIVVDEVTTLELTNVADSRCPSGAQCITSGKATVSVTVNQEGLSPYNVLIDLGRSTRLKGGYALTCEEIYPLPAARASSVLVSNAPSTEAIEGSKATVAQEDYNVQLMVTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQVGAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEATFDPILGYPASIYIDQTADVKEDDIMYEAYALKI 385
            MLRRRR+R  STSA +L LFV+VILL+LP   AA S+KQ +LNW     QGG  D  A+KA    A+A  N   +I   + +  P  + P PPLLDQ+  LFA+LGLP  +L+H+++L   +I+  LS VMP K +HL+VG   VVDE TTLELT V D+RCP GAQCIT GKAT  +TV QE + PY + + LGR+  L+ GY ++CEEI P P A  SSVLVS +PSTE +EGSK    Q +Y V+L V LP ERM GLV+GVLKW K+N M+RGY FS+RRMCFC  AT+RPV L V AWS+ V G Y D  N  VP EALAEYKTVGDLFLLL +AYA NADRVEA++DP+ GYP  IYIDQ+AD+ +DD+MYEA ALKI
Sbjct:    1 MLRRRRKRLLSTSASILGLFVVVILLLLPTRAAALSRKQRILNWFAEASQGGG-DQKANKAVEDEALAV-NSLTSIMKSSGESLPGTIAP-PPLLDQMLTLFASLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLELTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRGYEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVALPTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAWSQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYDPVFGYPNRIYIDQSADMADDDVMYEASALKI 381
The following BLAST results are available for this feature:
BLAST of NO19G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23487.18.000e-11558.33hypothetical protein Naga_100198g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00140NO19G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00140.1NO19G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00140.1.cds1NO19G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00140.1.cds2NO19G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00140.1.cds3NO19G00140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00140.1 ID=NO19G00140.1|Name=NO19G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGCTCCGGCGCCGTCGAAGAAGATCCAGCTCGACCTCGGCATGCGTCCT
GAGCCTGTTTGTGATGGTCATACTCCTTGTCCTGCCCGCTGGAGTCGCCG
CAGCCTCCAAAAAGCAGAGCCTTCTCAACTGGCTCAAGAGAACGTTCCAA
GGTGGTGAGGAGGATCTCGGCGCGGACAAGGCGTTCGCGTCTGGAGCAGT
CGCAGCCGCCAACCTCTTTCCCGCCATTACCGATGGGACAAACCAACCAC
CACCGCCAGTTGTTGGACCATCGCCGCCCCTCCTGGACCAGATCCGCGAG
CTATTCGCGACGCTCGGCTTGCCTCTCAGTTCGTTAGCTCATATCAACGA
CTTGAATGCAAATGATATAATACTGAGTCTTTCCGCAGTCATGCCCGCCA
AGATTGTGCACCTTCAAGTTGGAAGAGTGATAGTCGTGGATGAGGTAACC
ACGCTGGAACTCACAAATGTAGCGGACAGCAGATGTCCAAGTGGCGCGCA
GTGCATAACAAGTGGCAAAGCGACAGTGTCTGTGACGGTCAACCAGGAAG
GATTGTCCCCATACAATGTACTGATTGACTTGGGAAGATCCACCCGTTTA
AAGGGAGGATATGCGCTGACCTGCGAAGAGATATATCCGTTGCCCGCGGC
GCGGGCATCCTCCGTGCTCGTTTCGAATGCCCCATCCACAGAAGCCATCG
AGGGATCGAAGGCCACCGTGGCACAAGAAGACTATAACGTGCAGCTCATG
GTGACTTTGCCCGCGGAGCGCATGACTGGGCTCGTGGAAGGAGTCTTGAA
GTGGACTAAGGCTAATGGTATGATCCGGGGCTACGTCTTCAGCGAAAGGC
GGATGTGTTTCTGCCGGCCTGCCACTCTCCGGCCCGTCACCCTCCAGGTG
GGGGCCTGGAGCAAAACAGTGACGGGCTTCTATAACGATGAGCATAACGA
GCAGGTACCATCGGAGGCCTTGGCGGAGTACAAGACCGTCGGGGACCTGT
TCCTCCTCCTGGGTAAGGCCTACGCCGAAAACGCGGACAGGGTCGAGGCT
ACATTTGACCCAATATTAGGCTACCCCGCGAGTATCTACATTGATCAGAC
AGCCGATGTGAAAGAAGATGACATTATGTATGAGGCATATGCCTTAAAGA
TTTCATAG
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protein sequence of NO19G00140.1

>NO19G00140.1-protein ID=NO19G00140.1-protein|Name=NO19G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MLRRRRRRSSSTSACVLSLFVMVILLVLPAGVAAASKKQSLLNWLKRTFQ
GGEEDLGADKAFASGAVAAANLFPAITDGTNQPPPPVVGPSPPLLDQIRE
LFATLGLPLSSLAHINDLNANDIILSLSAVMPAKIVHLQVGRVIVVDEVT
TLELTNVADSRCPSGAQCITSGKATVSVTVNQEGLSPYNVLIDLGRSTRL
KGGYALTCEEIYPLPAARASSVLVSNAPSTEAIEGSKATVAQEDYNVQLM
VTLPAERMTGLVEGVLKWTKANGMIRGYVFSERRMCFCRPATLRPVTLQV
GAWSKTVTGFYNDEHNEQVPSEALAEYKTVGDLFLLLGKAYAENADRVEA
TFDPILGYPASIYIDQTADVKEDDIMYEAYALKIS*
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mRNA from alignment at chr19:44831..46172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00140.1 ID=NO19G00140.1|Name=NO19G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp|location=Sequence derived from alignment at chr19:44831..46172+ (Nannochloropsis oceanica)
ATGCTCCGGCGCCGTCGAAGAAGATCCAGCTCGACCTCGGCATGCGTCCT
GAGCCTGTTTGTGATGGTCATACTCCTTGTCCTGCCCGCTGGAGTCGCCG
CAGCCTCCAAAAAGCAGAGCCTTCTCAACTGGCTCAAGAGAACGTTCCAA
GGTGGTGAGGAGGATCTCGGCGCGGACAAGGCGTTCGCGTCTGGAGCAGT
CGCAGCCGCCAACCTCTTTCCCGCCATTACCGATGGGACAAACCAACCAC
CACCGCCAGTTGTTGGACCATCGCCGCCCCTCCTGGACCAGATCCGCGAG
CTATTCGCGACGCTCGGCTTGCCTCTCAGTTCGTTAGCTCATATCAACGA
CTTGAATGCAAATGATATAATACTGGTACGTAGTATAATTTCACATGCTT
TCTATATGCACAAGTGTCGCAACGACAGCCTGGGACTCACACGGCCGTGC
CCTTCACACTCGAACACACAGAGTCTTTCCGCAGTCATGCCCGCCAAGAT
TGTGCACCTTCAAGTTGGAAGAGTGATAGTCGTGGATGAGGTAAGCTCCA
ATGATCGTTCCTATCACTTCCAGGCTTTGGGCTCTTGTCTAGGCACTTCG
ACTCACTCGAACCAAAAAATTCATCTAGGTAACCACGCTGGAACTCACAA
ATGTAGCGGACAGCAGATGTCCAAGTGGCGCGCAGTGCATAACAAGTGGC
AAAGCGACAGTGTCTGTGACGGTCAACCAGGAAGGATTGTCCCCATACAA
TGTACTGATTGACTTGGGAAGATCCACCCGTTTAAAGGGAGGATATGCGC
TGACCTGCGAAGAGATATATCCGTTGCCCGCGGCGCGGGCATCCTCCGTG
CTCGTTTCGAATGCCCCATCCACAGAAGCCATCGAGGGATCGAAGGCCAC
CGTGGCACAAGAAGACTATAACGTGCAGCTCATGGTGACTTTGCCCGCGG
AGCGCATGACTGGGCTCGTGGAAGGAGTCTTGAAGTGGACTAAGGCTAAT
GGTATGATCCGGGGCTACGTCTTCAGCGAAAGGCGGATGTGTTTCTGCCG
GCCTGCCACTCTCCGGCCCGTCACCCTCCAGGTGGGGGCCTGGAGCAAAA
CAGTGACGGGCTTCTATAACGATGAGCATAACGAGCAGGTACCATCGGAG
GCCTTGGCGGAGTACAAGACCGTCGGGGACCTGTTCCTCCTCCTGGGTAA
GGCCTACGCCGAAAACGCGGACAGGGTCGAGGCTACATTTGACCCAATAT
TAGGCTACCCCGCGAGTATCTACATTGATCAGACAGCCGATGTGAAAGAA
GATGACATTATGTATGAGGCATATGCCTTAAAGATTTCATAG
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Coding sequence (CDS) from alignment at chr19:44831..46172+

>NO19G00140.1 ID=NO19G00140.1|Name=NO19G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr19:44831..46172+ (Nannochloropsis oceanica)
ATGCTCCGGCGCCGTCGAAGAAGATCCAGCTCGACCTCGGCATGCGTCCT
GAGCCTGTTTGTGATGGTCATACTCCTTGTCCTGCCCGCTGGAGTCGCCG
CAGCCTCCAAAAAGCAGAGCCTTCTCAACTGGCTCAAGAGAACGTTCCAA
GGTGGTGAGGAGGATCTCGGCGCGGACAAGGCGTTCGCGTCTGGAGCAGT
CGCAGCCGCCAACCTCTTTCCCGCCATTACCGATGGGACAAACCAACCAC
CACCGCCAGTTGTTGGACCATCGCCGCCCCTCCTGGACCAGATCCGCGAG
CTATTCGCGACGCTCGGCTTGCCTCTCAGTTCGTTAGCTCATATCAACGA
CTTGAATGCAAATGATATAATACTGAGTCTTTCCGCAGTCATGCCCGCCA
AGATTGTGCACCTTCAAGTTGGAAGAGTGATAGTCGTGGATGAGGTAACC
ACGCTGGAACTCACAAATGTAGCGGACAGCAGATGTCCAAGTGGCGCGCA
GTGCATAACAAGTGGCAAAGCGACAGTGTCTGTGACGGTCAACCAGGAAG
GATTGTCCCCATACAATGTACTGATTGACTTGGGAAGATCCACCCGTTTA
AAGGGAGGATATGCGCTGACCTGCGAAGAGATATATCCGTTGCCCGCGGC
GCGGGCATCCTCCGTGCTCGTTTCGAATGCCCCATCCACAGAAGCCATCG
AGGGATCGAAGGCCACCGTGGCACAAGAAGACTATAACGTGCAGCTCATG
GTGACTTTGCCCGCGGAGCGCATGACTGGGCTCGTGGAAGGAGTCTTGAA
GTGGACTAAGGCTAATGGTATGATCCGGGGCTACGTCTTCAGCGAAAGGC
GGATGTGTTTCTGCCGGCCTGCCACTCTCCGGCCCGTCACCCTCCAGGTG
GGGGCCTGGAGCAAAACAGTGACGGGCTTCTATAACGATGAGCATAACGA
GCAGGTACCATCGGAGGCCTTGGCGGAGTACAAGACCGTCGGGGACCTGT
TCCTCCTCCTGGGTAAGGCCTACGCCGAAAACGCGGACAGGGTCGAGGCT
ACATTTGACCCAATATTAGGCTACCCCGCGAGTATCTACATTGATCAGAC
AGCCGATGTGAAAGAAGATGACATTATGTATGAGGCATATGCCTTAAAGA
TTTCATAG
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Synonyms
Publications