NO19G00100, NO19G00100 (gene) Nannochloropsis oceanica

Overview
NameNO19G00100
Unique NameNO19G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2472
Alignment locationchr19:21345..23816 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:21345..23816 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO19G00100 vs. NCBI_GenBank
Match: EWM23494.1 (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 273.5 bits (698), Expect = 7.900e-70
Identity = 140/257 (54.47%), Postives = 189/257 (73.54%), Query Frame = 0
Query:   43 RLMATRGILMLLVAC--VCGSVQGQLSARKKIASGSSKAGVA----EAWDQMGEQVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLR 294
            R MAT   L LL +C   C   QGQ  +  K  + + K G+     E  DQ GE+ K   E VK+++ GL DPVGS  K AFFQ VKK  G+D++ELF+T+ KSKAFE ILENVE+QHR++E +PILGA+ GF E +GRRL+D+ET AGF KG++N+  M KT A+HA +PTLMN ++ ELSKSDDPEI  LFK A ENDEAS++EL+N+ A DLYPGVD+ +++D++++ +FDK+L  PE++RF+DQDPY+++V R
Sbjct:   53 RSMATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKK-DGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308          
BLAST of NO19G00100 vs. NCBI_GenBank
Match: XP_005854240.1 (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >EKU22120.1 hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.0 bits (393), Expect = 1.800e-34
Identity = 87/166 (52.41%), Postives = 113/166 (68.07%), Query Frame = 0
Query:   45 MATRGILMLLVAC--VCGSVQGQLSARKKIASGSSKAGVA----EAWDQMGEQVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHA 205
            MAT   L LL +C   C   QGQ  +  K  + + K G+     E  DQ GE+ K   E VK+++ GL DPVGS  K AFFQ VKK  G+D++ELF+T+ KSKAFE ILENVE+QHR++E +PILGA+ GF E +GRRL+D+ET AGF KG++N+  M KT A+HA
Sbjct:    1 MATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKK-DGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHA 165          
BLAST of NO19G00100 vs. NCBI_GenBank
Match: EWM25436.1 (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 2.200e-32
Identity = 75/196 (38.27%), Postives = 122/196 (62.24%), Query Frame = 0
Query:   99 VKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLRT 295
            ++ A  G   P+    K+AF Q + K G VD +ELF   +KSKAF+ +L+NVE+QHR+++E+P+L A  GF ++ GRRLS  ET  GF  G+QN+ +  K      KDP      + +++   +P I +LF+ A E D A++ ELQ++     +PGVD+ V+R++    +F+K+LS PE+ RF+D++ + +   R+
Sbjct:  106 LQQAASGFDQPLRPNDKVAFLQKIAK-GNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRS 300          
BLAST of NO19G00100 vs. NCBI_GenBank
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 9.700e-20
Identity = 61/195 (31.28%), Postives = 97/195 (49.74%), Query Frame = 0
Query:   98 AVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVL 293
            A K  M   L      ++L   Q   K  G+D ++LF+T   S   + IL++VE QH++ME +P+L A  GF E+ GRRL D  T AGF  G+ ++   +  + +  KDP++    L EL   D   I   F AA   D  ++  +   +   LYPGV+  V++ +  +    K+    E+ R ++ DP +   L
Sbjct:   39 AAKDVMEDTLPAYKPDAELTMMQDTWK-NGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAAL 232          
BLAST of NO19G00100 vs. NCBI_GenBank
Match: XP_005853961.1 (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >EKU22395.1 hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.7 bits (265), Expect = 1.300e-19
Identity = 61/195 (31.28%), Postives = 96/195 (49.23%), Query Frame = 0
Query:   98 AVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVL 293
            A K  M   L       +L   Q   K  G+D ++LF+T   S   + IL++VE QH++ME +P+L A  GF E+ GRRL D  T AGF  G+ ++   +  + +  KDP++    L EL   D   I   F AA   D  ++  +   +   LYPGV+  V++ +  +    K+    E+ R ++ DP +   L
Sbjct:   39 AAKDVMEDTLPAYKPDGELTMMQDTWK-NGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAAL 232          
BLAST of NO19G00100 vs. NCBI_GenBank
Match: EWM22205.1 (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 1.100e-18
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 0
Query:  131 IELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVK-GRRLSDEETKAGFRKGMQNMWNMM-KTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK 291
            +++F   + +K F+ IL+N ++QHR++++ P+LGA+ GF  +K  RRLS EETK  F  GM  + N+          +P  ++  L +++ S DP I  LFK A   ++ ++ ELQ+      Y G+D    R+I    + DK    PE+  F+ +D  LAK
Sbjct:   89 VQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAK 250          
BLAST of NO19G00100 vs. NCBI_GenBank
Match: XP_005854196.1 (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >EKU22160.1 hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.2 bits (217), Expect = 4.700e-14
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 0
Query:  131 IELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVK-GRRLSDEE------------------------------TKAGFRKGMQNMWNMM-KTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK 291
            +++F   + +K F+ IL+N ++QHR++++ P+LGA+ GF  +K  RRLS EE                              TK  F  GM  + N+          +P  ++  L +++ S DP I  LFK A   ++ ++ ELQ+      Y G+D    R+I    + DK    PE+  F+ +D  LAK
Sbjct:   89 VQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAK 280          
The following BLAST results are available for this feature:
BLAST of NO19G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM23494.17.900e-7054.47hypothetical protein Naga_100198g11 [Nannochlorops... [more]
XP_005854240.11.800e-3452.41hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
EWM25436.12.200e-3238.27hypothetical protein Naga_100005g87 [Nannochlorops... [more]
EWM24107.19.700e-2031.28hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
XP_005853961.11.300e-1931.28hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
EWM22205.11.100e-1833.95hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
XP_005854196.14.700e-1428.65hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL015nonsL015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR038ngnoR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007703NSK007703Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00100.1NO19G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100198g11gene6967Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00100.1NO19G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00100 ID=NO19G00100|Name=NO19G00100|organism=Nannochloropsis oceanica|type=gene|length=2472bp
CTAGATGCACTGTGAAAGCTGTCTATAGGATGTATTTATAGATCGAGATT
AGTTCGTCCTAGAGACACTTTGTATTCGGTGGGCGCAACGTTTTGGAAGG
GTACTTCACATTGACATAGCGGTGGAAAGCTCCATGATCGTCAAGCCCCG
CATTGTTTAAGAGATGAGCGTTGAAGGAGGCAGAGGCCAGCAAGGGTGCC
AAGAGGTGGCGAGGCGATAGCGAGTGTCGTCTGACTATTACTTCTCAATC
AGGAAAAACGCACGATCCTTTGAATATGGTCAAGAAACGTTCCCTCAAAA
AAAGGCACGCTCGCTTGTGAACCGGCCACGCGCCATGGACTGATTAGAAA
TCGGGTCATAAATCAAGATGCTCTCTTGAGTGTACGTCTACATGGCGCGT
GCCTCAAATGATCGACTCGTTGAGACGAAACAGGGAGAATCTCTGTGTTC
AAACCCGCCGCTCTCCGATAAGGGGCGGTGAGTAGACAGGTACGGAGAGA
ATATAATAGTCAACACAACCTGTTAATGGTAGCCTATAATTACCACAACC
TAGCTTCATTCACGTAATGGACGTCAAAGCAAGCAAAGCGCATGCCACGC
TCTGACGCTCTATTATGTCGAGCACCTGTCGCCTGGCGACTTCTGCTCAG
GCACTCATACAACAACGAAAATCACCTTCCCCCACTCGTGCTCCGCACAC
AGGTCAAAACAATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTC
CTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAA
GAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACC
AGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATG
CCAGGCCgtaagtagaacgaagaagtgggagaaggttgagacattgatgc
ctgcacgcgcacacccatctacaacattttcgtttcccctacacttttcc
ttttctatcgctctctccagTCTTGGATCCCGTGGGCTCGACGAGCAAGC
TGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAG
TTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGgtaggcacaatctc
aatgtgtgtctctgtgtatgtgtatgtgtatgtctacgtgtgtgtgcgtg
tagggtgtgtgatactctctaattccttgcatttctctctcttacacgtc
cctcactttccctccttccttatcttctttccgcccttcttcctaacacc
agAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATT
CCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTGAAGGGCCGACGCCT
CAGCGACGAGGAGgtgcggtgcagcgggaaggaggggagggggtgaggga
ggaatttcgttggttgagcgtatttcctttacaatcataatcatcgacct
tgcgctttaccacctcctcctctatattcagACCAAGGCCGGGTTTAGGA
AGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCC
AAGgtaagccttccttccgccctccctccttccctgtctttccctttctc
atccgccctcctgcttcccctatttttgattccagGACCCCACACTCATG
AACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTGgt
aaggagacgtgggaaaagacggaagagaagaagggcgcttcctctccatc
cacaaccaccgactacctctcttcagtctctgtccctcacgtatttccct
cgccaccttttcttttcccttattctgctctccagGCGCTATTCAAGGCA
GCGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGC
CGCCGACCTTTACCCCGgtacgaggcaatgaaggagagagggagggaagg
agggatggagggagggagggacagcaaagaagtgacgccaaagagtcacg
tcactcactttatgctattactcttatctatgcatagGCGTGGACGTGTC
TGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCT
TCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTG
CTGAGGACGCCCAAGTAAAGGCGTGTAGGCACGAAATAATATTTTAATAA
AGTATTCAAGAGATGGAAATGGTAGGTTGAGAAAACTGTGATTTCAAGGA
GGGGATGAGGGAGGATAAAGCAAGAGGTAATAGGACAAGAAGCTATGGCC
GTCGACGAAGATGCAAAGTATGTTATTGATTGCTTGCCAAAAGGCAGGTT
ATAGAAAAATCCTTGGGATGTTTCTGCCTAGAAAGTCAAACAAACGAATG
AAGAAATAACGATGTTACCAAA
back to top

protein sequence of NO19G00100.1

>NO19G00100.1-protein ID=NO19G00100.1-protein|Name=NO19G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MPRSDALLCRAPVAWRLLLRHSYNNENHLPPLVLRTQVKTMQRLMATRGI
LMLLVACVCGSVQGQLSARKKIASGSSKAGVAEAWDQMGEQVKANAEAVK
AAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENV
EVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTV
AEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAAD
LYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLRTPK*
back to top
Synonyms
Publications