NO19G00100.1, NO19G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00100.1
Unique NameNO19G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1736
Alignment locationchr19:21345..23816 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:21345..23816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00100.1 vs.
Match: EWM23494.1 (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 273.5 bits (698), Expect = 7.900e-70
Identity = 140/257 (54.47%), Postives = 189/257 (73.54%), Query Frame = 0 
Query:   43 RLMATRGILMLLVACV--CGSVQGQLSARKKIASGSSKAGVA----EAWDQMGEQVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLR 294
            R MAT   L LL +C   C   QGQ  +  K  + + K G+     E  DQ GE+ K   E VK+++ GL DPVGS  K AFFQ VKK  G+D++ELF+T+ KSKAFE ILENVE+QHR++E +PILGA+ GF E +GRRL+D+ET AGF KG++N+  M KT A+HA +PTLMN ++ ELSKSDDPEI  LFK A ENDEAS++EL+N+ A DLYPGVD+ +++D++++ +FDK+L  PE++RF+DQDPY+++V R
Sbjct:   53 RSMATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKK-DGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308
The following BLAST results are available for this feature:
BLAST of NO19G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23494.17.900e-7054.47hypothetical protein Naga_100198g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00100NO19G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00100.1NO19G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00100.1.cds1NO19G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00100.1.cds2NO19G00100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00100.1.cds3NO19G00100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00100.1.cds4NO19G00100.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00100.1.cds5NO19G00100.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00100.1.cds6NO19G00100.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00100.1.cds7NO19G00100.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00100.1 ID=NO19G00100.1|Name=NO19G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1736bp
CTAGATGCACTGTGAAAGCTGTCTATAGGATGTATTTATAGATCGAGATT
AGTTCGTCCTAGAGACACTTTGTATTCGGTGGGCGCAACGTTTTGGAAGG
GTACTTCACATTGACATAGCGGTGGAAAGCTCCATGATCGTCAAGCCCCG
CATTGTTTAAGAGATGAGCGTTGAAGGAGGCAGAGGCCAGCAAGGGTGCC
AAGAGGTGGCGAGGCGATAGCGAGTGTCGTCTGACTATTACTTCTCAATC
AGGAAAAACGCACGATCCTTTGAATATGGTCAAGAAACGTTCCCTCAAAA
AAAGGCACGCTCGCTTGTGAACCGGCCACGCGCCATGGACTGATTAGAAA
TCGGGTCATAAATCAAGATGCTCTCTTGAGTGTACGTCTACATGGCGCGT
GCCTCAAATGATCGACTCGTTGAGACGAAACAGGGAGAATCTCTGTGTTC
AAACCCGCCGCTCTCCGATAAGGGGCGGTGAGTAGACAGGTACGGAGAGA
ATATAATAGTCAACACAACCTGTTAATGGTAGCCTATAATTACCACAACC
TAGCTTCATTCACGTAATGGACGTCAAAGCAAGCAAAGCGCATGCCACGC
TCTGACGCTCTATTATGTCGAGCACCTGTCGCCTGGCGACTTCTGCTCAG
GCACTCATACAACAACGAAAATCACCTTCCCCCACTCGTGCTCCGCACAC
AGGTCAAAACAATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTC
CTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAA
GAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACC
AGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATG
CCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTCCA
GGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACACTG
TCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGCAG
CACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCT
GGAGGTGAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTTTA
GGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAACAC
GCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTC
CGATGACCCTGAGATTTTGGCGCTATTCAAGGCAGCGGGTGAGAACGACG
AGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACCCC
GGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGA
CAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCT
ACCTAGCCAAGGTGCTGAGGACGCCCAAGTAAAGGCGTGTAGGCACGAAA
TAATATTTTAATAAAGTATTCAAGAGATGGAAATGGTAGGTTGAGAAAAC
TGTGATTTCAAGGAGGGGATGAGGGAGGATAAAGCAAGAGGTAATAGGAC
AAGAAGCTATGGCCGTCGACGAAGATGCAAAGTATGTTATTGATTGCTTG
CCAAAAGGCAGGTTATAGAAAAATCCTTGGGATGTTTCTGCCTAGAAAGT
CAAACAAACGAATGAAGAAATAACGATGTTACCAAA
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protein sequence of NO19G00100.1

>NO19G00100.1-protein ID=NO19G00100.1-protein|Name=NO19G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MPRSDALLCRAPVAWRLLLRHSYNNENHLPPLVLRTQVKTMQRLMATRGI
LMLLVACVCGSVQGQLSARKKIASGSSKAGVAEAWDQMGEQVKANAEAVK
AAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENV
EVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTV
AEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAAD
LYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLRTPK*
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mRNA from alignment at chr19:21345..23816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00100.1 ID=NO19G00100.1|Name=NO19G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at chr19:21345..23816- (Nannochloropsis oceanica)
CTAGATGCACTGTGAAAGCTGTCTATAGGATGTATTTATAGATCGAGATT
AGTTCGTCCTAGAGACACTTTGTATTCGGTGGGCGCAACGTTTTGGAAGG
GTACTTCACATTGACATAGCGGTGGAAAGCTCCATGATCGTCAAGCCCCG
CATTGTTTAAGAGATGAGCGTTGAAGGAGGCAGAGGCCAGCAAGGGTGCC
AAGAGGTGGCGAGGCGATAGCGAGTGTCGTCTGACTATTACTTCTCAATC
AGGAAAAACGCACGATCCTTTGAATATGGTCAAGAAACGTTCCCTCAAAA
AAAGGCACGCTCGCTTGTGAACCGGCCACGCGCCATGGACTGATTAGAAA
TCGGGTCATAAATCAAGATGCTCTCTTGAGTGTACGTCTACATGGCGCGT
GCCTCAAATGATCGACTCGTTGAGACGAAACAGGGAGAATCTCTGTGTTC
AAACCCGCCGCTCTCCGATAAGGGGCGGTGAGTAGACAGGTACGGAGAGA
ATATAATAGTCAACACAACCTGTTAATGGTAGCCTATAATTACCACAACC
TAGCTTCATTCACGTAATGGACGTCAAAGCAAGCAAAGCGCATGCCACGC
TCTGACGCTCTATTATGTCGAGCACCTGTCGCCTGGCGACTTCTGCTCAG
GCACTCATACAACAACGAAAATCACCTTCCCCCACTCGTGCTCCGCACAC
AGGTCAAAACAATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTC
CTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAA
GAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACC
AGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATG
CCAGGCCGTAAGTAGAACGAAGAAGTGGGAGAAGGTTGAGACATTGATGC
CTGCACGCGCACACCCATCTACAACATTTTCGTTTCCCCTACACTTTTCC
TTTTCTATCGCTCTCTCCAGTCTTGGATCCCGTGGGCTCGACGAGCAAGC
TGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAG
TTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGGTAGGCACAATCTC
AATGTGTGTCTCTGTGTATGTGTATGTGTATGTCTACGTGTGTGTGCGTG
TAGGGTGTGTGATACTCTCTAATTCCTTGCATTTCTCTCTCTTACACGTC
CCTCACTTTCCCTCCTTCCTTATCTTCTTTCCGCCCTTCTTCCTAACACC
AGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATT
CCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTGAAGGGCCGACGCCT
CAGCGACGAGGAGGTGCGGTGCAGCGGGAAGGAGGGGAGGGGGTGAGGGA
GGAATTTCGTTGGTTGAGCGTATTTCCTTTACAATCATAATCATCGACCT
TGCGCTTTACCACCTCCTCCTCTATATTCAGACCAAGGCCGGGTTTAGGA
AGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCC
AAGGTAAGCCTTCCTTCCGCCCTCCCTCCTTCCCTGTCTTTCCCTTTCTC
ATCCGCCCTCCTGCTTCCCCTATTTTTGATTCCAGGACCCCACACTCATG
AACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTGGT
AAGGAGACGTGGGAAAAGACGGAAGAGAAGAAGGGCGCTTCCTCTCCATC
CACAACCACCGACTACCTCTCTTCAGTCTCTGTCCCTCACGTATTTCCCT
CGCCACCTTTTCTTTTCCCTTATTCTGCTCTCCAGGCGCTATTCAAGGCA
GCGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGC
CGCCGACCTTTACCCCGGTACGAGGCAATGAAGGAGAGAGGGAGGGAAGG
AGGGATGGAGGGAGGGAGGGACAGCAAAGAAGTGACGCCAAAGAGTCACG
TCACTCACTTTATGCTATTACTCTTATCTATGCATAGGCGTGGACGTGTC
TGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCT
TCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTG
CTGAGGACGCCCAAGTAAAGGCGTGTAGGCACGAAATAATATTTTAATAA
AGTATTCAAGAGATGGAAATGGTAGGTTGAGAAAACTGTGATTTCAAGGA
GGGGATGAGGGAGGATAAAGCAAGAGGTAATAGGACAAGAAGCTATGGCC
GTCGACGAAGATGCAAAGTATGTTATTGATTGCTTGCCAAAAGGCAGGTT
ATAGAAAAATCCTTGGGATGTTTCTGCCTAGAAAGTCAAACAAACGAATG
AAGAAATAACGATGTTACCAAA
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Coding sequence (CDS) from alignment at chr19:21345..23816-

>NO19G00100.1 ID=NO19G00100.1|Name=NO19G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr19:21345..23816- (Nannochloropsis oceanica)
ATGCCACGCTCTGACGCTCTATTATGTCGAGCACCTGTCGCCTGGCGACT
TCTGCTCAGGCACTCATACAACAACGAAAATCACCTTCCCCCACTCGTGC
TCCGCACACAGGTCAAAACAATGCAAAGATTAATGGCGACCCGGGGCATC
CTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTC
GGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGG
CGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAG
GCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGC
CTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTAT
TCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTG
GAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTCC
AGGCTTTCTGGAGGTGAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGG
CCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTG
GCCGAACACGCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAACT
CTCAAAGTCCGATGACCCTGAGATTTTGGCGCTATTCAAGGCAGCGGGTG
AGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGAC
CTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCACA
GAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACC
AGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAA
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Synonyms
Publications