NO19G00060, NO19G00060 (gene) Nannochloropsis oceanica

Overview
NameNO19G00060
Unique NameNO19G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2737
Alignment locationchr19:12679..15415 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:12679..15415 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G00060 vs. NCBI_GenBank
Match: XP_005854238.1 (hypothetical protein NGA_0023802 [Nannochloropsis gaditana CCMP526] >EKU22118.1 hypothetical protein NGA_0023802 [Nannochloropsis gaditana CCMP526] >EWM23492.1 hypothetical protein Naga_100198g7 [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.600e-42
Identity = 91/185 (49.19%), Postives = 127/185 (68.65%), Query Frame = 0 
Query:    1 MLRALAISFLLALSLGGAAGFPPLANNGSMEFI-SIRSTRQRVRCGQQLAIVSKVRLNSFGDADRLYCALQQTTVENTTAHFEVKEFINRFKNVNTRKFELNFGEDNPASDGSQKFFWIWHRDGRLWSEGLDYTLRVVTKLDSATEKIANWRFYCETKKDNFTSHYYWPKTDPRVQLSTNIRAPC 185
            ML   ++  +LAL++        LANNGSM  +  ++  ++RVRCG+ LA++ +VRLNSFGDAD LYCAL+    +  +A F++K+ + RF ++NTRKF + FG++ P SDG++K++W W RDGRL+SEGL Y+LRV   L +AT     WRFYCETKK+NFTSHY+W KT   V     + APC
Sbjct:    1 MLHFFSLFVILALTVPQGLA-QTLANNGSMTLLRDLKVNKRRVRCGRNLAVIGRVRLNSFGDADSLYCALRNMNYD--SAQFDLKDRVTRFTHINTRKFVMMFGDETP-SDGTKKYWWSWSRDGRLFSEGLKYSLRVNLILRNATATPVTWRFYCETKKNNFTSHYFWDKTGADVNKQVRVAAPC 181
The following BLAST results are available for this feature:
BLAST of NO19G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854238.11.600e-4249.19hypothetical protein NGA_0023802 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR038ngnoR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007699NSK007699Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00060.1NO19G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611011gene_10566Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100198g7gene6963Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00060.1NO19G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00060 ID=NO19G00060|Name=NO19G00060|organism=Nannochloropsis oceanica|type=gene|length=2737bp
GGTCAAGAGCGCGTGCCTCCTCTCTCCCTGTCCTCGTCTTTGTTCTCTTG
CCACACTCCCCCTCATCTTCTCGTCGACATTTTCCCTATAGGACACATAC
TAAGTACTCATTAGTTCTCACTATTCGTCCTCCTATAGCTCAGGTTGTGA
TGTTTGTGTGGACATATGACCTTAATTTTTTTCCTGGTTCGAGCATGGGC
CAGTCCTTGCGCTTAGCTTATTCTTCTTTGAGCCGCCTGCCCAAACCCAC
AACCTTTCCCCCTCCAACAATGCCACTATATACACAGCTGGTATCGGATC
GATAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGgtacgtt
gtttcctctcccattcctactccctccgccctcgtctaatcagtgcgtac
tgagcctcttctcaccgctcccttgcttctcatgtgtgcatagtcaatat
agctctggcagcgagagatatgtcccgaaagcttacaatccaaaacttta
cctactctccatccaactctcccatgcagAGCTTGGGCGGAGCCGCTGGC
TTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTCATTTCCATCAGGTC
CACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGCTATTGTTTCTAAGG
TCCGGCTTAATAGTTTCGGGGATGCTGACAGACTTTATTGCGCGgtaaga
aggaatagcgtggatgtgcgcggtggatccctgaattcggaagtagagag
ctttttcgtccgtccatctagatggcatcagtgataaacagaacatgtgg
ccccatctcctttctcactttgccttttattcttcacctctatattctct
tgttaacgtttgcatgtatgtcctcatcctcgtggcctgccccttatccc
ccctgcagTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCGAA
GTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTTGA
GCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTTCT
TCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACTAC
ACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCCAA
CTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTACT
ACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGgtacgaagggggaag
ggagggatggagggtggaaggaagggatggagggtggagggagggaaggg
ggtaaatgagtgaatgcgaggcgaaggcgggtaagttgaccagtcattac
ttccggaatcgaacagacaaatacaaatcagtcagagaccaggggtcccg
ggagtataaggagacgttgaggggtaggaggattcctccgcgtcttcctc
tccctccaaagcctctttctccttttcctaacccttctcctcgcttcctc
ctcttcttagtcaaccatctgaaacctgcgcactactttgtctcactgtc
gcgccttccctctcttctttcttttctcgtctccctacagACCAACATTA
GAGCGCCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAG
CAGAAGCAGTAAGTCAATCGAAGACTCACGGTAGACGAGAATCCAAGAAG
TCACCAGGAGACTCATAGTAAACGACGAGTCAAAGCAGAACAGGTAAGTC
GCTGTGAGGGCACAGAGATCGAAGCTGCAAAAAGTAGGACTCACGGAAGA
GGAGGAGAAGGAGGAAGAGGAGAAGAGGAAGAAGAGGAGGAAGAAGAGAA
AGAAGAAAGAGATGGAGGAGAAGGTAGAGAAGAAGGTAGAGGAGGAGGTA
GAGGAGAGGGTGGAGGAGGAGAAGGAGGAAAAGGAGGAATAGGAGGAATA
GGAGGAGAAAAAATTCAAAATGAACTAGAAGAAGAGGAGAAGATGCGTAA
AAAGGGTAAGAAAAAGAGAGAGAGAGGAGAGAGAGAAGGGAAAGCTAGCG
AAACCGAAAGGAGAGAAGGAAAGGAAACAGAGAGGAGCCGGTGGGGCGCA
TTGCGTAAATGCCTTTTGAAGGCTTGCATGGATTGGGGGAGAGAAGGATA
AAAGAAGGGTGGACTTAAGGACGGAGAACAAGGAGCCAGAGCAGGCAAAT
CATCAAGAAAAGCAAAGCGCTTGCGCGCTGCTACTTCTGCACCTAATGAA
TCATATGTTTGTTTTATGCCTGCTTCATTAGTTTTTCACCCCGTTCCTAC
ATCCCTCTCGAACTATTGCATGTTACCTCAGACCGCCATGCGCCGCTAGC
TGGCTCTATATAAACGCGCTCCTCGAGCTGCAATATACCTACATGCCTTT
TACTTTGACTTCCTCCTCCAATCTTTACTCTGCTTTCCCTTCTTCCCTCC
CTCCCTCCTATTCCTCTCCAACTCCCTTTTTCTTCCCTTACCCCTTTTTC
AAACCCGCCCCCGTCCAGGCCGGCTTGAGTAGATACTTCCCGAAATGCTC
ACCCTGGCTCTGGTAGTCGGCTATCTCCCGCAGCGCCGCCTTAACACTGC
CCTCCGGCTGCCCCAAGCGCTGCACCAGCTCCCGCGCCGCCCAGGCCGCT
TTGAGCTTGAAGCACTGGAACAAGGTCGTCCGCAGCGCCGCTTCGTCGAG
CCTAGCTCTCTTCATCCCCCCTTCCCCTCCTCCCCCT
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protein sequence of NO19G00060.1

>NO19G00060.1-protein ID=NO19G00060.1-protein|Name=NO19G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MLRALAISFLLALSLGGAAGFPPLANNGSMEFISIRSTRQRVRCGQQLAI
VSKVRLNSFGDADRLYCALQQTTVENTTAHFEVKEFINRFKNVNTRKFEL
NFGEDNPASDGSQKFFWIWHRDGRLWSEGLDYTLRVVTKLDSATEKIANW
RFYCETKKDNFTSHYYWPKTDPRVQLSTNIRAPCARPPPKMTARGPKQKQ
*
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Synonyms
Publications