NO19G00060.1, NO19G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00060.1
Unique NameNO19G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1982
Alignment locationchr19:12679..15415 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:12679..15415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00060.1 vs.
Match: XP_005854238.1 (hypothetical protein NGA_0023802 [Nannochloropsis gaditana CCMP526]; EKU22118.1 hypothetical protein NGA_0023802 [Nannochloropsis gaditana CCMP526]; EWM23492.1 hypothetical protein Naga_100198g7 [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.600e-42
Identity = 91/185 (49.19%), Postives = 127/185 (68.65%), Query Frame = 0 
Query:    1 MLRALAISFLLALSLGGAAGFPPLANNGSMEFI-SIRSTRQRVRCGQQLAIVSKVRLNSFGDADRLYCALQQTTVENTTAHFEVKEFINRFKNVNTRKFELNFGEDNPASDGSQKFFWIWHRDGRLWSEGLDYTLRVVTKLDSATEKIANWRFYCETKKDNFTSHYYWPKTDPRVQLSTNIRAPC 185
            ML   ++  +LAL++        LANNGSM  +  ++  ++RVRCG+ LA++ +VRLNSFGDAD LYCAL+    ++  A F++K+ + RF ++NTRKF + FG++ P SDG++K++W W RDGRL+SEGL Y+LRV   L +AT     WRFYCETKK+NFTSHY+W KT   V     + APC
Sbjct:    1 MLHFFSLFVILALTVPQGLA-QTLANNGSMTLLRDLKVNKRRVRCGRNLAVIGRVRLNSFGDADSLYCALRNMNYDS--AQFDLKDRVTRFTHINTRKFVMMFGDETP-SDGTKKYWWSWSRDGRLFSEGLKYSLRVNLILRNATATPVTWRFYCETKKNNFTSHYFWDKTGADVNKQVRVAAPC 181
The following BLAST results are available for this feature:
BLAST of NO19G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854238.11.600e-4249.19hypothetical protein NGA_0023802 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00060NO19G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00060.1NO19G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00060.1.cds1NO19G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00060.1.cds2NO19G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00060.1.cds3NO19G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00060.1.cds4NO19G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00060.1 ID=NO19G00060.1|Name=NO19G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp
GGTCAAGAGCGCGTGCCTCCTCTCTCCCTGTCCTCGTCTTTGTTCTCTTG
CCACACTCCCCCTCATCTTCTCGTCGACATTTTCCCTATAGGACACATAC
TAAGTACTCATTAGTTCTCACTATTCGTCCTCCTATAGCTCAGGTTGTGA
TGTTTGTGTGGACATATGACCTTAATTTTTTTCCTGGTTCGAGCATGGGC
CAGTCCTTGCGCTTAGCTTATTCTTCTTTGAGCCGCCTGCCCAAACCCAC
AACCTTTCCCCCTCCAACAATGCCACTATATACACAGCTGGTATCGGATC
GATAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAGCTTGG
GCGGAGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTC
ATTTCCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGC
TATTGTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCTGACAGACTTT
ATTGCGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCGAA
GTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTTGA
GCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTTCT
TCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACTAC
ACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCCAA
CTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTACT
ACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTAGAGCG
CCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAGCAGAA
GCAGTAAGTCAATCGAAGACTCACGGTAGACGAGAATCCAAGAAGTCACC
AGGAGACTCATAGTAAACGACGAGTCAAAGCAGAACAGGTAAGTCGCTGT
GAGGGCACAGAGATCGAAGCTGCAAAAAGTAGGACTCACGGAAGAGGAGG
AGAAGGAGGAAGAGGAGAAGAGGAAGAAGAGGAGGAAGAAGAGAAAGAAG
AAAGAGATGGAGGAGAAGGTAGAGAAGAAGGTAGAGGAGGAGGTAGAGGA
GAGGGTGGAGGAGGAGAAGGAGGAAAAGGAGGAATAGGAGGAATAGGAGG
AGAAAAAATTCAAAATGAACTAGAAGAAGAGGAGAAGATGCGTAAAAAGG
GTAAGAAAAAGAGAGAGAGAGGAGAGAGAGAAGGGAAAGCTAGCGAAACC
GAAAGGAGAGAAGGAAAGGAAACAGAGAGGAGCCGGTGGGGCGCATTGCG
TAAATGCCTTTTGAAGGCTTGCATGGATTGGGGGAGAGAAGGATAAAAGA
AGGGTGGACTTAAGGACGGAGAACAAGGAGCCAGAGCAGGCAAATCATCA
AGAAAAGCAAAGCGCTTGCGCGCTGCTACTTCTGCACCTAATGAATCATA
TGTTTGTTTTATGCCTGCTTCATTAGTTTTTCACCCCGTTCCTACATCCC
TCTCGAACTATTGCATGTTACCTCAGACCGCCATGCGCCGCTAGCTGGCT
CTATATAAACGCGCTCCTCGAGCTGCAATATACCTACATGCCTTTTACTT
TGACTTCCTCCTCCAATCTTTACTCTGCTTTCCCTTCTTCCCTCCCTCCC
TCCTATTCCTCTCCAACTCCCTTTTTCTTCCCTTACCCCTTTTTCAAACC
CGCCCCCGTCCAGGCCGGCTTGAGTAGATACTTCCCGAAATGCTCACCCT
GGCTCTGGTAGTCGGCTATCTCCCGCAGCGCCGCCTTAACACTGCCCTCC
GGCTGCCCCAAGCGCTGCACCAGCTCCCGCGCCGCCCAGGCCGCTTTGAG
CTTGAAGCACTGGAACAAGGTCGTCCGCAGCGCCGCTTCGTCGAGCCTAG
CTCTCTTCATCCCCCCTTCCCCTCCTCCCCCT
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protein sequence of NO19G00060.1

>NO19G00060.1-protein ID=NO19G00060.1-protein|Name=NO19G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MLRALAISFLLALSLGGAAGFPPLANNGSMEFISIRSTRQRVRCGQQLAI
VSKVRLNSFGDADRLYCALQQTTVENTTAHFEVKEFINRFKNVNTRKFEL
NFGEDNPASDGSQKFFWIWHRDGRLWSEGLDYTLRVVTKLDSATEKIANW
RFYCETKKDNFTSHYYWPKTDPRVQLSTNIRAPCARPPPKMTARGPKQKQ
*
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mRNA from alignment at chr19:12679..15415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00060.1 ID=NO19G00060.1|Name=NO19G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2737bp|location=Sequence derived from alignment at chr19:12679..15415- (Nannochloropsis oceanica)
GGTCAAGAGCGCGTGCCTCCTCTCTCCCTGTCCTCGTCTTTGTTCTCTTG
CCACACTCCCCCTCATCTTCTCGTCGACATTTTCCCTATAGGACACATAC
TAAGTACTCATTAGTTCTCACTATTCGTCCTCCTATAGCTCAGGTTGTGA
TGTTTGTGTGGACATATGACCTTAATTTTTTTCCTGGTTCGAGCATGGGC
CAGTCCTTGCGCTTAGCTTATTCTTCTTTGAGCCGCCTGCCCAAACCCAC
AACCTTTCCCCCTCCAACAATGCCACTATATACACAGCTGGTATCGGATC
GATAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGGTACGTT
GTTTCCTCTCCCATTCCTACTCCCTCCGCCCTCGTCTAATCAGTGCGTAC
TGAGCCTCTTCTCACCGCTCCCTTGCTTCTCATGTGTGCATAGTCAATAT
AGCTCTGGCAGCGAGAGATATGTCCCGAAAGCTTACAATCCAAAACTTTA
CCTACTCTCCATCCAACTCTCCCATGCAGAGCTTGGGCGGAGCCGCTGGC
TTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTCATTTCCATCAGGTC
CACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGCTATTGTTTCTAAGG
TCCGGCTTAATAGTTTCGGGGATGCTGACAGACTTTATTGCGCGGTAAGA
AGGAATAGCGTGGATGTGCGCGGTGGATCCCTGAATTCGGAAGTAGAGAG
CTTTTTCGTCCGTCCATCTAGATGGCATCAGTGATAAACAGAACATGTGG
CCCCATCTCCTTTCTCACTTTGCCTTTTATTCTTCACCTCTATATTCTCT
TGTTAACGTTTGCATGTATGTCCTCATCCTCGTGGCCTGCCCCTTATCCC
CCCTGCAGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCGAA
GTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTTGA
GCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTTCT
TCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACTAC
ACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCCAA
CTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTACT
ACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGGTACGAAGGGGGAAG
GGAGGGATGGAGGGTGGAAGGAAGGGATGGAGGGTGGAGGGAGGGAAGGG
GGTAAATGAGTGAATGCGAGGCGAAGGCGGGTAAGTTGACCAGTCATTAC
TTCCGGAATCGAACAGACAAATACAAATCAGTCAGAGACCAGGGGTCCCG
GGAGTATAAGGAGACGTTGAGGGGTAGGAGGATTCCTCCGCGTCTTCCTC
TCCCTCCAAAGCCTCTTTCTCCTTTTCCTAACCCTTCTCCTCGCTTCCTC
CTCTTCTTAGTCAACCATCTGAAACCTGCGCACTACTTTGTCTCACTGTC
GCGCCTTCCCTCTCTTCTTTCTTTTCTCGTCTCCCTACAGACCAACATTA
GAGCGCCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAG
CAGAAGCAGTAAGTCAATCGAAGACTCACGGTAGACGAGAATCCAAGAAG
TCACCAGGAGACTCATAGTAAACGACGAGTCAAAGCAGAACAGGTAAGTC
GCTGTGAGGGCACAGAGATCGAAGCTGCAAAAAGTAGGACTCACGGAAGA
GGAGGAGAAGGAGGAAGAGGAGAAGAGGAAGAAGAGGAGGAAGAAGAGAA
AGAAGAAAGAGATGGAGGAGAAGGTAGAGAAGAAGGTAGAGGAGGAGGTA
GAGGAGAGGGTGGAGGAGGAGAAGGAGGAAAAGGAGGAATAGGAGGAATA
GGAGGAGAAAAAATTCAAAATGAACTAGAAGAAGAGGAGAAGATGCGTAA
AAAGGGTAAGAAAAAGAGAGAGAGAGGAGAGAGAGAAGGGAAAGCTAGCG
AAACCGAAAGGAGAGAAGGAAAGGAAACAGAGAGGAGCCGGTGGGGCGCA
TTGCGTAAATGCCTTTTGAAGGCTTGCATGGATTGGGGGAGAGAAGGATA
AAAGAAGGGTGGACTTAAGGACGGAGAACAAGGAGCCAGAGCAGGCAAAT
CATCAAGAAAAGCAAAGCGCTTGCGCGCTGCTACTTCTGCACCTAATGAA
TCATATGTTTGTTTTATGCCTGCTTCATTAGTTTTTCACCCCGTTCCTAC
ATCCCTCTCGAACTATTGCATGTTACCTCAGACCGCCATGCGCCGCTAGC
TGGCTCTATATAAACGCGCTCCTCGAGCTGCAATATACCTACATGCCTTT
TACTTTGACTTCCTCCTCCAATCTTTACTCTGCTTTCCCTTCTTCCCTCC
CTCCCTCCTATTCCTCTCCAACTCCCTTTTTCTTCCCTTACCCCTTTTTC
AAACCCGCCCCCGTCCAGGCCGGCTTGAGTAGATACTTCCCGAAATGCTC
ACCCTGGCTCTGGTAGTCGGCTATCTCCCGCAGCGCCGCCTTAACACTGC
CCTCCGGCTGCCCCAAGCGCTGCACCAGCTCCCGCGCCGCCCAGGCCGCT
TTGAGCTTGAAGCACTGGAACAAGGTCGTCCGCAGCGCCGCTTCGTCGAG
CCTAGCTCTCTTCATCCCCCCTTCCCCTCCTCCCCCT
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Coding sequence (CDS) from alignment at chr19:12679..15415-

>NO19G00060.1 ID=NO19G00060.1|Name=NO19G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr19:12679..15415- (Nannochloropsis oceanica)
ATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAGCTTGGGCGG
AGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTCATTT
CCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGCTATT
GTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCTGACAGACTTTATTG
CGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCGAAGTAA
AGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTTGAGCTA
AATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTTCTTCTG
GATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACTACACTC
TCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCCAACTGG
CGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTACTACTG
GCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTAGAGCGCCAT
GCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAGCAGAAGCAG
TAA
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Synonyms
Publications