NO19G00040, NO19G00040 (gene) Nannochloropsis oceanica

Overview
NameNO19G00040
Unique NameNO19G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1165
Alignment locationchr19:11288..12452 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:11288..12452 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription by RNA polymerase II
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0005674transcription factor TFIIF complex
Vocabulary: INTERPRO
TermDefinition
IPR011039TFIIF_interaction
IPR003196TFIIF_beta
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR038ngnoR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007698NSK007698Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00040.1NO19G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634049gene_10568Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00040.1NO19G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00040 ID=NO19G00040|Name=NO19G00040|organism=Nannochloropsis oceanica|type=gene|length=1165bp
ATGGCAGATAGCAGTGGCTCGGGTCAGGTGCCGTCACGGAAGCGGCCCGC
AGCAGCCCTAAAAAGgtgtaaaaaagcagaggggagggggggcgggcggg
agggaggatggcatggacgaaagttacgtgcagcatggatggtgctatgt
ggttgctccagcccggggaataggttacttaattcttttcattcccgggc
acacatcccacgagactgacgattctccctgcctatacatataaaaatac
atacattcaacacggttggcgtaatcatcctcccctcccccctcccgcca
ttagCAAAGgtacgttccttcttccctttctccctcatcccccttcccac
tccatccttctcactcattttttgacgcatctatacaatcaccccttcac
agGCAAAGAGAAGGCAGACACCGGGACGCCATCGACCTCGAGCACGGGCA
AGCGACGCATGCTCGACACGACGCGGCAAGGCGTACGAGTATGGTTGGTC
AAAGTGCCCGTGGCGGTCGCAGAAGCCATCAAGAACGCCCAGGAGGGAGA
CAAGATCGGGACACTGACCGTCAGTCGGAGCAATGGTAGCGGTGGCAGCG
GTGGGGGAGGGCAGGAGCTGgtgagtgagagtgtgaaagggagcgtggcg
gggatgagatgggagatggagggagggaggggaaagagggagaggagata
ggatgctgagcgtagtcagagcagtgatgctgatgtagtgatagaaataa
tggtttgggatgggcaagaagggaggaagggggaaatgccaagaaagaga
taccaataagagagaggagcatgaggaagaaaacagttgaggcgggcggt
ggtgccagcaccagcgtgcacaacactccccggatgatgaatgacaagga
ggcggaaaatattgggtggaaaggaattgatagccccttgcttcgaacca
acctctatcgttctccttgttcccccaccaccacacggacatggtagCGC
ACCGAGGCCGTGCGTCTCGAGGAATCTCTGTGCGAGCGCCTGGAGCTGCC
CCGCGATTTCAGCCTAGAAGCCCCCCCCCCGACACGAGAATGCCCAAGAT
GTACGCCCTGCGTGCCGCCTCCACAGAGAGGGCAGGGAAGGAAGGAGGAG
GGGCAGGAGCCCTAG
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protein sequence of NO19G00040.1

>NO19G00040.1-protein ID=NO19G00040.1-protein|Name=NO19G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MADSSGSGQVPSRKRPAAALKSKGKEKADTGTPSTSSTGKRRMLDTTRQG
VRVWLVKVPVAVAEAIKNAQEGDKIGTLTVSRSNGSGGSGGGGQELRTEA
VRLEESLCERLELPRDFSLEAPPPTRECPRCTPCVPPPQRGQGRKEEGQE
P*
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Synonyms
Publications