NO19G00040.1, NO19G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00040.1
Unique NameNO19G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length456
Alignment locationchr19:11288..12452 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:11288..12452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00040NO19G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00040.1NO19G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00040.1.cds1NO19G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00040.1.cds2NO19G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00040.1.cds3NO19G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00040.1.cds4NO19G00040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00040.1 ID=NO19G00040.1|Name=NO19G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGGCAGATAGCAGTGGCTCGGGTCAGGTGCCGTCACGGAAGCGGCCCGC
AGCAGCCCTAAAAAGCAAAGGCAAAGAGAAGGCAGACACCGGGACGCCAT
CGACCTCGAGCACGGGCAAGCGACGCATGCTCGACACGACGCGGCAAGGC
GTACGAGTATGGTTGGTCAAAGTGCCCGTGGCGGTCGCAGAAGCCATCAA
GAACGCCCAGGAGGGAGACAAGATCGGGACACTGACCGTCAGTCGGAGCA
ATGGTAGCGGTGGCAGCGGTGGGGGAGGGCAGGAGCTGCGCACCGAGGCC
GTGCGTCTCGAGGAATCTCTGTGCGAGCGCCTGGAGCTGCCCCGCGATTT
CAGCCTAGAAGCCCCCCCCCCGACACGAGAATGCCCAAGATGTACGCCCT
GCGTGCCGCCTCCACAGAGAGGGCAGGGAAGGAAGGAGGAGGGGCAGGAG
CCCTAG
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protein sequence of NO19G00040.1

>NO19G00040.1-protein ID=NO19G00040.1-protein|Name=NO19G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MADSSGSGQVPSRKRPAAALKSKGKEKADTGTPSTSSTGKRRMLDTTRQG
VRVWLVKVPVAVAEAIKNAQEGDKIGTLTVSRSNGSGGSGGGGQELRTEA
VRLEESLCERLELPRDFSLEAPPPTRECPRCTPCVPPPQRGQGRKEEGQE
P*
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mRNA from alignment at chr19:11288..12452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00040.1 ID=NO19G00040.1|Name=NO19G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at chr19:11288..12452+ (Nannochloropsis oceanica)
ATGGCAGATAGCAGTGGCTCGGGTCAGGTGCCGTCACGGAAGCGGCCCGC
AGCAGCCCTAAAAAGGTGTAAAAAAGCAGAGGGGAGGGGGGGCGGGCGGG
AGGGAGGATGGCATGGACGAAAGTTACGTGCAGCATGGATGGTGCTATGT
GGTTGCTCCAGCCCGGGGAATAGGTTACTTAATTCTTTTCATTCCCGGGC
ACACATCCCACGAGACTGACGATTCTCCCTGCCTATACATATAAAAATAC
ATACATTCAACACGGTTGGCGTAATCATCCTCCCCTCCCCCCTCCCGCCA
TTAGCAAAGGTACGTTCCTTCTTCCCTTTCTCCCTCATCCCCCTTCCCAC
TCCATCCTTCTCACTCATTTTTTGACGCATCTATACAATCACCCCTTCAC
AGGCAAAGAGAAGGCAGACACCGGGACGCCATCGACCTCGAGCACGGGCA
AGCGACGCATGCTCGACACGACGCGGCAAGGCGTACGAGTATGGTTGGTC
AAAGTGCCCGTGGCGGTCGCAGAAGCCATCAAGAACGCCCAGGAGGGAGA
CAAGATCGGGACACTGACCGTCAGTCGGAGCAATGGTAGCGGTGGCAGCG
GTGGGGGAGGGCAGGAGCTGGTGAGTGAGAGTGTGAAAGGGAGCGTGGCG
GGGATGAGATGGGAGATGGAGGGAGGGAGGGGAAAGAGGGAGAGGAGATA
GGATGCTGAGCGTAGTCAGAGCAGTGATGCTGATGTAGTGATAGAAATAA
TGGTTTGGGATGGGCAAGAAGGGAGGAAGGGGGAAATGCCAAGAAAGAGA
TACCAATAAGAGAGAGGAGCATGAGGAAGAAAACAGTTGAGGCGGGCGGT
GGTGCCAGCACCAGCGTGCACAACACTCCCCGGATGATGAATGACAAGGA
GGCGGAAAATATTGGGTGGAAAGGAATTGATAGCCCCTTGCTTCGAACCA
ACCTCTATCGTTCTCCTTGTTCCCCCACCACCACACGGACATGGTAGCGC
ACCGAGGCCGTGCGTCTCGAGGAATCTCTGTGCGAGCGCCTGGAGCTGCC
CCGCGATTTCAGCCTAGAAGCCCCCCCCCCGACACGAGAATGCCCAAGAT
GTACGCCCTGCGTGCCGCCTCCACAGAGAGGGCAGGGAAGGAAGGAGGAG
GGGCAGGAGCCCTAG
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Coding sequence (CDS) from alignment at chr19:11288..12452+

>NO19G00040.1 ID=NO19G00040.1|Name=NO19G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr19:11288..12452+ (Nannochloropsis oceanica)
ATGGCAGATAGCAGTGGCTCGGGTCAGGTGCCGTCACGGAAGCGGCCCGC
AGCAGCCCTAAAAAGCAAAGGCAAAGAGAAGGCAGACACCGGGACGCCAT
CGACCTCGAGCACGGGCAAGCGACGCATGCTCGACACGACGCGGCAAGGC
GTACGAGTATGGTTGGTCAAAGTGCCCGTGGCGGTCGCAGAAGCCATCAA
GAACGCCCAGGAGGGAGACAAGATCGGGACACTGACCGTCAGTCGGAGCA
ATGGTAGCGGTGGCAGCGGTGGGGGAGGGCAGGAGCTGCGCACCGAGGCC
GTGCGTCTCGAGGAATCTCTGTGCGAGCGCCTGGAGCTGCCCCGCGATTT
CAGCCTAGAAGCCCCCCCCCCGACACGAGAATGCCCAAGATGTACGCCCT
GCGTGCCGCCTCCACAGAGAGGGCAGGGAAGGAAGGAGGAGGGGCAGGAG
CCCTAG
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Synonyms
Publications