NO18G02650, NO18G02650 (gene) Nannochloropsis oceanica

Overview
NameNO18G02650
Unique NameNO18G02650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr18:863675..865216 +

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Properties
Property NameValue
DescriptionUPF0664 stress-induced protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:863675..865216 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO18G02650 vs. NCBI_GenBank
Match: EWM23475.1 (hypothetical protein Naga_101028g2 [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 4.500e-69
Identity = 156/243 (64.20%), Postives = 177/243 (72.84%), Query Frame = 0
Query:   29 MSVNPCPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQEG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYMDPNDPSRVLVNAPMATASYADPMNQASAPPSGGYASYS 264
            MS NPCPA APP+WYPGE L+ + D V+F+LSLGRL P Q+ ATCKAKG LHLTNIRLLFIA KPT SPVP GPEF+SFDVPLRGIVDVKFNQPIFGANNLQGKV PVSCL A++PV+WKA F+AGGT VLIP+LLRLMDQLH+E                     XXXXXXXXXXXXXXX                     GYMDP+DPSRVLV+AP+ATA+Y +PM  ASAPP    +S++
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGXXXXXXXXXXXXXXXWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVATATYTNPMPHASAPPPSSGSSFN 243          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_005854651.1 (arabinogalactan protein [Nannochloropsis gaditana CCMP526] >EKU21708.1 arabinogalactan protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.8 bits (634), Expect = 1.800e-62
Identity = 144/219 (65.75%), Postives = 160/219 (73.06%), Query Frame = 0
Query:   29 MSVNPCPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQEG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYMDPNDPSRVLVNAPM 240
            MS NPCPA APP+WYPGE L+ + D V+F+LSLGRL P Q+ ATCKAKG LHLTNIRLLFIA KPT SPVP GPEF+SFDVPLRGIVDVKFNQPIFGANNLQGKV PVSCL A++PV+WKA F+AGGT VLIP+LLRLMDQLH+E                     XXXXXXXXXXXXXXX                     GYMDP+DPSRVLV+AP+
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGXXXXXXXXXXXXXXXWYGGEGNLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPV 219          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_005854652.1 (arabinogalactan protein [Nannochloropsis gaditana CCMP526] >EKU21709.1 arabinogalactan protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 244.6 bits (623), Expect = 3.500e-61
Identity = 115/145 (79.31%), Postives = 128/145 (88.28%), Query Frame = 0
Query:   29 MSVNPCPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQE 174
            MS NPCPA APP+WYPGE L+ + D V+F+LSLGRL P Q+ ATCKAKG LHLTNIRLLFIA KPT SPVP GPEF+SFDVPLRGIVDVKFNQPIFGANNLQGKV PVSCL A++PV+WKA F+AGGT VLIP+LLRLMDQLH+E
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHRE 145          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: OWZ03920.1 (Arabinogalactan protein [Phytophthora megakarya])

HSP 1 Score: 82.8 bits (203), Expect = 1.800e-12
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 0
Query:   71 ATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQEG 175
            A  K KG ++ T  R++F+A K       NG  F +F++PL  + D KFNQPIFGA ++ G V P   +  +    WK  F  GGT V++P  LRLM++  ++G
Sbjct:   42 AVFKGKGRIYCTTQRIIFVAEK---GITQNGCYFEAFEIPLVKMTDEKFNQPIFGACSISGLVAPSGSIEGSGNFSWKITFANGGTGVVLPVFLRLMEKRKKKG 142          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_022932704.1 (uncharacterized protein LOC111439171 [Cucurbita moschata] >XP_023539771.1 uncharacterized protein LOC111800356 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 3.000e-12
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 0
Query:   40 PTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPV----SCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQ 173
            P  +  E  V + DGV+F +      P   T   KAKGT++L+N+R++F+++KP        P F++FD+PL  + D KFNQPIF  NN+ G V PV          S   +K  F  GG    +P    L+  + Q
Sbjct:   13 PVPFTNELFVLARDGVEFVID---KIPGANTDRVKAKGTIYLSNVRMVFVSSKP-------DPWFTAFDMPLLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQ 139          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_022972085.1 (uncharacterized protein LOC111470726 [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 3.000e-12
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 0
Query:   40 PTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPV----SCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQ 173
            P  +  E  V + DGV+F +      P   T   KAKGT++L+N+R++F+++KP        P F++FD+PL  + D KFNQPIF  NN+ G V PV          S   +K  F  GG    +P    L+  + Q
Sbjct:   13 PVPFTNELFVLARDGVEFVID---KIPGANTDRVKAKGTIYLSNVRMVFVSSKP-------DPWFTAFDMPLLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQ 139          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_006844782.1 (UPF0664 stress-induced protein C29B12.11c [Amborella trichopoda] >ERN06457.1 hypothetical protein AMTR_s00016p00259850 [Amborella trichopoda])

HSP 1 Score: 81.6 bits (200), Expect = 3.900e-12
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 0
Query:   32 NPCPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPV----SCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQ 173
            +P      P  +  E  + S DGV+F +      P+      KAKGT++L+N+R+LF+A KP         +F +FD+PL  + D KFNQPIF  NN+ G V PV          SP  +K  F  GG    +P    L+  + Q
Sbjct:    5 SPLLPNGMPVPFENEMFILSRDGVEFEID---KIPTAPGGKIKAKGTIYLSNVRMLFVAKKPV-------GDFRAFDMPLLYVHDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSPHSFKILFKEGGCGTFVPLFFNLIASVKQ 139          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: KMZ74790.1 (hypothetical protein ZOSMA_122G00580 [Zostera marina])

HSP 1 Score: 80.9 bits (198), Expect = 6.700e-12
Identity = 54/150 (36.00%), Postives = 77/150 (51.33%), Query Frame = 0
Query:   29 MSVNP--CPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPV----SCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQ 173
            M+VNP     G  P  + GE LV + +GV+F +      P       KAKGT++++N+R++F+A KP  +       F++FD+PL  I + KFNQPIF  NN+ G V PV          S   +K  F  GG    IP  L L+  + Q
Sbjct:    1 MTVNPQLLSHGGMPVPFVGEILVLNRNGVEFEVD---KIPGADGGKMKAKGTIYISNVRMVFVADKPVGN-------FTAFDMPLLYIHEEKFNQPIFFCNNITGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFIPLFLNLIASVRQ 140          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_012207802.1 (hypothetical protein SPRG_12501 [Saprolegnia parasitica CBS 223.65] >KDO21457.1 hypothetical protein SPRG_12501 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 80.5 bits (197), Expect = 8.700e-12
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 0
Query:   74 KAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSC--LGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQEG 175
            KA G +++T  RL+F A K   +   +G  F +F++PL  I D KFNQP+FG+ N+ G V PV       A+P++W+  F  GGT   +P  LRLM+     G
Sbjct:   43 KASGRIYITTQRLVFCADK---AATQHGRFFQAFEIPLDNIADDKFNQPMFGSCNISGDVFPVGTDEGDVATPIEWRVSFPNGGTGTFLPIFLRLMEHKKHAG 142          
BLAST of NO18G02650 vs. NCBI_GenBank
Match: XP_022152415.1 (UPF0664 stress-induced protein C29B12.11c [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 8.700e-12
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 0
Query:   29 MSVNP--CPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPV----SCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQ 173
            M++NP   P G P   +  E  V + DGV+F +      P   +   KAKGT++L+N+R++F+A+KP  S       F +FD+PL  + D KFNQPIF  NN+ G V PV          S   +K  F  GG    +P    L+  + Q
Sbjct:    1 MALNPNLFPNGMPVP-FTNELFVLARDGVEFEVD---KIPGANSGRVKAKGTIYLSNVRMVFVASKPDAS-------FIAFDMPLLFVHDEKFNQPIFHCNNISGFVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQ 139          
The following BLAST results are available for this feature:
BLAST of NO18G02650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23475.14.500e-6964.20hypothetical protein Naga_101028g2 [Nannochloropsi... [more]
XP_005854651.11.800e-6265.75arabinogalactan protein [Nannochloropsis gaditana ... [more]
XP_005854652.13.500e-6179.31arabinogalactan protein [Nannochloropsis gaditana ... [more]
OWZ03920.11.800e-1239.42Arabinogalactan protein [Phytophthora megakarya][more]
XP_022932704.13.000e-1235.04uncharacterized protein LOC111439171 [Cucurbita mo... [more]
XP_022972085.13.000e-1235.04uncharacterized protein LOC111470726 [Cucurbita ma... [more]
XP_006844782.13.900e-1234.48UPF0664 stress-induced protein C29B12.11c [Amborel... [more]
KMZ74790.16.700e-1236.00hypothetical protein ZOSMA_122G00580 [Zostera mari... [more]
XP_012207802.18.700e-1239.81hypothetical protein SPRG_12501 [Saprolegnia paras... [more]
XP_022152415.18.700e-1235.33UPF0664 stress-induced protein C29B12.11c [Momordi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007344NSK007344Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02650.1NO18G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613181gene_10913Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101028g2gene6977Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02650.1NO18G02650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02650 ID=NO18G02650|Name=NO18G02650|organism=Nannochloropsis oceanica|type=gene|length=1542bp
CCTCTCCCCCCATTCCCCCCCCCCAAAAAAGGAAGCATATCCACGTCGAG
GCACATATATCACAAACCCCCCCATGTACTAACGCCACCGCGCTCACCGA
AAGTCCAAACACCGGACTTTTTATAGCCGCCATATAGCACCTCTTTCTCT
CTATGCTGTCCCGCAGGACTGTCATTGACCTATCCCTCTCTCTCTCTCTC
TCTCTCTGTCCCTCTCTGCAGACCCCCTCAAAAAGGATGAGTGTCAACCC
CTGTCCAGCCGGCGCCCCTCCGACCTGGTACCCAGGCGAATGTCTCGTAT
CATCCACAGACGGTGTGGACTTCACACTTTCGCTTGGCCGCCTAAGTCCG
TCTCAAGCTACGGCCACTTGCAAGGCGAAAGGTACCCTCCACTTGACCAA
CATCCGCCTTCTCTTCATTGCCGCCAAGCCCACCCGGAGTCCCGTCCCCA
ACGGGCCCGAGTTTTCTTCTTTCGACGTGgtaggttattgggaaaaaggg
atcctggggaagaagggaaaatgggcacagatgggatggacagatgcctt
gccccttacctcttgactaaacctctcgctttcctccctctacggtcaca
gCCGCTGCGAGGCATTGTCGACGTGAAATTCAACCAGCCCATCTTTGGTG
CCAATAACTTACAAGGCAAAGTCATGCCTGTCTCCTGCCTGGGCGCCGCC
TCCCCCGTAGACTGGAAGGCGAGGTTTCTGGCGGGAGGGACCGACGTCCT
GATTCCAAGCCTTCTGCGCCTCATGGACCAGCTCCACCAGGAGGGGTCGG
GAGCGGCCGCGATGGCACAACGGCAGCAACAGCAGCACCAGCAGCAACAG
TTTTGGGGTAGTGGAGGAGGGGGCATCGGAGGAGGGGGTGGGCTGCCTGT
GGCACAGGCGGTGGGAGTGGGGGCAGGGGCCGAGGGAGGGGGATACATGG
ATCCGAATGATCCATCACGCGTGCTTGTGAACGCTCCCATGgtgagtgcc
gaagaagcaagggaggaagggaaggaggtgtgtagggggaaggacagcgt
ggaaggaagggtaaaagcttgcatttacctccaaatctatgacgggcgtt
tcagctcctcctcctcgtacaggcttccttccgtctcagcgtcgaccctt
ctgtctctcttttctttttctctctctttccctctccctctcacagGCGA
CAGCCTCGTATGCAGACCCTATGAACCAAGCCTCGGCCCCGCCCTCCGGC
GGCTACGCCAGCTACTCAAGATGAAAGAGTAGAGGCAAGAGGACCGGAGG
AAAATAATGAAAATGAATGAGGAGGAATGGAGAAGCATAGAGCCGGGCAG
AAGGACATGGAGGCGTGAAGTCTAGTGACGACGAGGAGTGAAGGAAACCT
GAAACCTGAGGGAGGGAGGTAGGTAGGGAGATAAAGGCGGGATTGTGAGT
ATGTCTGTGCAGTGAGGGAGCAACAGGTGGGAAACAAAGAATGTAAGAGA
AAGAGAGAGCTGACTGGGTTGAGGCGATGCACGGTAATCCAT
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protein sequence of NO18G02650.1

>NO18G02650.1-protein ID=NO18G02650.1-protein|Name=NO18G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLSRRTVIDLSLSLSLSLCPSLQTPSKRMSVNPCPAGAPPTWYPGECLVS
STDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPN
GPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKAR
FLAGGTDVLIPSLLRLMDQLHQEGSGAAAMAQRQQQQHQQQQFWGSGGGG
IGGGGGLPVAQAVGVGAGAEGGGYMDPNDPSRVLVNAPMATASYADPMNQ
ASAPPSGGYASYSR*
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Synonyms
Publications