NO18G02650.1, NO18G02650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02650.1
Unique NameNO18G02650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr18:863675..865216 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:863675..865216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02650.1 vs.
Match: EWM23475.1 (hypothetical protein Naga_101028g2 [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 3.000e-81
Identity = 168/251 (66.93%), Postives = 190/251 (75.70%), Query Frame = 0 
Query:   29 MSVNPCPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQEGSGAAAMAQR----QQQQH------------QQQQFWGSGGGGIGGGGGLPVAQAVGVGAGAEGGGYMDPNDPSRVLVNAPMATASYADPMNQASAPPSGGYASYS 264
            MS NPCPA APP+WYPGE L+ + D V+F+LSLGRL P Q+ ATCKAKG LHLTNIRLLFIA KPT SPVP GPEF+SFDVPLRGIVDVKFNQPIFGANNLQGKV PVSCL A++PV+WKA F+AGGT VLIP+LLRLMDQLH+E  G A  AQ+    QQQ H            QQQQ W       GG G LPVAQA  V  G EGGGYMDP+DPSRVLV+AP+ATA+Y +PM  ASAPP    +S++
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPW------YGGEGTLPVAQA--VAPGVEGGGYMDPSDPSRVLVDAPVATATYTNPMPHASAPPPSSGSSFN 243
The following BLAST results are available for this feature:
BLAST of NO18G02650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23475.13.000e-8166.93hypothetical protein Naga_101028g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02650NO18G02650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02650.1NO18G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02650.1.cds1NO18G02650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02650.1.cds2NO18G02650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02650.1.cds3NO18G02650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02650.1 ID=NO18G02650.1|Name=NO18G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
CCTCTCCCCCCATTCCCCCCCCCCAAAAAAGGAAGCATATCCACGTCGAG
GCACATATATCACAAACCCCCCCATGTACTAACGCCACCGCGCTCACCGA
AAGTCCAAACACCGGACTTTTTATAGCCGCCATATAGCACCTCTTTCTCT
CTATGCTGTCCCGCAGGACTGTCATTGACCTATCCCTCTCTCTCTCTCTC
TCTCTCTGTCCCTCTCTGCAGACCCCCTCAAAAAGGATGAGTGTCAACCC
CTGTCCAGCCGGCGCCCCTCCGACCTGGTACCCAGGCGAATGTCTCGTAT
CATCCACAGACGGTGTGGACTTCACACTTTCGCTTGGCCGCCTAAGTCCG
TCTCAAGCTACGGCCACTTGCAAGGCGAAAGGTACCCTCCACTTGACCAA
CATCCGCCTTCTCTTCATTGCCGCCAAGCCCACCCGGAGTCCCGTCCCCA
ACGGGCCCGAGTTTTCTTCTTTCGACGTGCCGCTGCGAGGCATTGTCGAC
GTGAAATTCAACCAGCCCATCTTTGGTGCCAATAACTTACAAGGCAAAGT
CATGCCTGTCTCCTGCCTGGGCGCCGCCTCCCCCGTAGACTGGAAGGCGA
GGTTTCTGGCGGGAGGGACCGACGTCCTGATTCCAAGCCTTCTGCGCCTC
ATGGACCAGCTCCACCAGGAGGGGTCGGGAGCGGCCGCGATGGCACAACG
GCAGCAACAGCAGCACCAGCAGCAACAGTTTTGGGGTAGTGGAGGAGGGG
GCATCGGAGGAGGGGGTGGGCTGCCTGTGGCACAGGCGGTGGGAGTGGGG
GCAGGGGCCGAGGGAGGGGGATACATGGATCCGAATGATCCATCACGCGT
GCTTGTGAACGCTCCCATGGCGACAGCCTCGTATGCAGACCCTATGAACC
AAGCCTCGGCCCCGCCCTCCGGCGGCTACGCCAGCTACTCAAGATGAAAG
AGTAGAGGCAAGAGGACCGGAGGAAAATAATGAAAATGAATGAGGAGGAA
TGGAGAAGCATAGAGCCGGGCAGAAGGACATGGAGGCGTGAAGTCTAGTG
ACGACGAGGAGTGAAGGAAACCTGAAACCTGAGGGAGGGAGGTAGGTAGG
GAGATAAAGGCGGGATTGTGAGTATGTCTGTGCAGTGAGGGAGCAACAGG
TGGGAAACAAAGAATGTAAGAGAAAGAGAGAGCTGACTGGGTTGAGGCGA
TGCACGGTAATCCAT
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protein sequence of NO18G02650.1

>NO18G02650.1-protein ID=NO18G02650.1-protein|Name=NO18G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLSRRTVIDLSLSLSLSLCPSLQTPSKRMSVNPCPAGAPPTWYPGECLVS
STDGVDFTLSLGRLSPSQATATCKAKGTLHLTNIRLLFIAAKPTRSPVPN
GPEFSSFDVPLRGIVDVKFNQPIFGANNLQGKVMPVSCLGAASPVDWKAR
FLAGGTDVLIPSLLRLMDQLHQEGSGAAAMAQRQQQQHQQQQFWGSGGGG
IGGGGGLPVAQAVGVGAGAEGGGYMDPNDPSRVLVNAPMATASYADPMNQ
ASAPPSGGYASYSR*
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mRNA from alignment at chr18:863675..865216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02650.1 ID=NO18G02650.1|Name=NO18G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at chr18:863675..865216+ (Nannochloropsis oceanica)
CCTCTCCCCCCATTCCCCCCCCCCAAAAAAGGAAGCATATCCACGTCGAG
GCACATATATCACAAACCCCCCCATGTACTAACGCCACCGCGCTCACCGA
AAGTCCAAACACCGGACTTTTTATAGCCGCCATATAGCACCTCTTTCTCT
CTATGCTGTCCCGCAGGACTGTCATTGACCTATCCCTCTCTCTCTCTCTC
TCTCTCTGTCCCTCTCTGCAGACCCCCTCAAAAAGGATGAGTGTCAACCC
CTGTCCAGCCGGCGCCCCTCCGACCTGGTACCCAGGCGAATGTCTCGTAT
CATCCACAGACGGTGTGGACTTCACACTTTCGCTTGGCCGCCTAAGTCCG
TCTCAAGCTACGGCCACTTGCAAGGCGAAAGGTACCCTCCACTTGACCAA
CATCCGCCTTCTCTTCATTGCCGCCAAGCCCACCCGGAGTCCCGTCCCCA
ACGGGCCCGAGTTTTCTTCTTTCGACGTGGTAGGTTATTGGGAAAAAGGG
ATCCTGGGGAAGAAGGGAAAATGGGCACAGATGGGATGGACAGATGCCTT
GCCCCTTACCTCTTGACTAAACCTCTCGCTTTCCTCCCTCTACGGTCACA
GCCGCTGCGAGGCATTGTCGACGTGAAATTCAACCAGCCCATCTTTGGTG
CCAATAACTTACAAGGCAAAGTCATGCCTGTCTCCTGCCTGGGCGCCGCC
TCCCCCGTAGACTGGAAGGCGAGGTTTCTGGCGGGAGGGACCGACGTCCT
GATTCCAAGCCTTCTGCGCCTCATGGACCAGCTCCACCAGGAGGGGTCGG
GAGCGGCCGCGATGGCACAACGGCAGCAACAGCAGCACCAGCAGCAACAG
TTTTGGGGTAGTGGAGGAGGGGGCATCGGAGGAGGGGGTGGGCTGCCTGT
GGCACAGGCGGTGGGAGTGGGGGCAGGGGCCGAGGGAGGGGGATACATGG
ATCCGAATGATCCATCACGCGTGCTTGTGAACGCTCCCATGGTGAGTGCC
GAAGAAGCAAGGGAGGAAGGGAAGGAGGTGTGTAGGGGGAAGGACAGCGT
GGAAGGAAGGGTAAAAGCTTGCATTTACCTCCAAATCTATGACGGGCGTT
TCAGCTCCTCCTCCTCGTACAGGCTTCCTTCCGTCTCAGCGTCGACCCTT
CTGTCTCTCTTTTCTTTTTCTCTCTCTTTCCCTCTCCCTCTCACAGGCGA
CAGCCTCGTATGCAGACCCTATGAACCAAGCCTCGGCCCCGCCCTCCGGC
GGCTACGCCAGCTACTCAAGATGAAAGAGTAGAGGCAAGAGGACCGGAGG
AAAATAATGAAAATGAATGAGGAGGAATGGAGAAGCATAGAGCCGGGCAG
AAGGACATGGAGGCGTGAAGTCTAGTGACGACGAGGAGTGAAGGAAACCT
GAAACCTGAGGGAGGGAGGTAGGTAGGGAGATAAAGGCGGGATTGTGAGT
ATGTCTGTGCAGTGAGGGAGCAACAGGTGGGAAACAAAGAATGTAAGAGA
AAGAGAGAGCTGACTGGGTTGAGGCGATGCACGGTAATCCAT
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Coding sequence (CDS) from alignment at chr18:863675..865216+

>NO18G02650.1 ID=NO18G02650.1|Name=NO18G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr18:863675..865216+ (Nannochloropsis oceanica)
ATGCTGTCCCGCAGGACTGTCATTGACCTATCCCTCTCTCTCTCTCTCTC
TCTCTGTCCCTCTCTGCAGACCCCCTCAAAAAGGATGAGTGTCAACCCCT
GTCCAGCCGGCGCCCCTCCGACCTGGTACCCAGGCGAATGTCTCGTATCA
TCCACAGACGGTGTGGACTTCACACTTTCGCTTGGCCGCCTAAGTCCGTC
TCAAGCTACGGCCACTTGCAAGGCGAAAGGTACCCTCCACTTGACCAACA
TCCGCCTTCTCTTCATTGCCGCCAAGCCCACCCGGAGTCCCGTCCCCAAC
GGGCCCGAGTTTTCTTCTTTCGACGTGCCGCTGCGAGGCATTGTCGACGT
GAAATTCAACCAGCCCATCTTTGGTGCCAATAACTTACAAGGCAAAGTCA
TGCCTGTCTCCTGCCTGGGCGCCGCCTCCCCCGTAGACTGGAAGGCGAGG
TTTCTGGCGGGAGGGACCGACGTCCTGATTCCAAGCCTTCTGCGCCTCAT
GGACCAGCTCCACCAGGAGGGGTCGGGAGCGGCCGCGATGGCACAACGGC
AGCAACAGCAGCACCAGCAGCAACAGTTTTGGGGTAGTGGAGGAGGGGGC
ATCGGAGGAGGGGGTGGGCTGCCTGTGGCACAGGCGGTGGGAGTGGGGGC
AGGGGCCGAGGGAGGGGGATACATGGATCCGAATGATCCATCACGCGTGC
TTGTGAACGCTCCCATGGCGACAGCCTCGTATGCAGACCCTATGAACCAA
GCCTCGGCCCCGCCCTCCGGCGGCTACGCCAGCTACTCAAGATGA
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Synonyms
Publications