NO18G02630, NO18G02630 (gene) Nannochloropsis oceanica

Overview
NameNO18G02630
Unique NameNO18G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length956
Alignment locationchr18:858028..858983 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:858028..858983 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO18G02630 vs. NCBI_GenBank
Match: EWM23470.1 (hypothetical protein Naga_100651g3 [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 3.100e-14
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:    2 TSSTSNPAAASSYTAPSAPRARRSSLPTTKELLAGLDMFLHLCAPPGKYRLVRILGFYYIMTRIFLTFVATLLLS 77
            +++ S+ +  S  TA   P +RRSSLPT  +LLAGLDMFLHLCAPPGKYR++RILGFYYI  RIF TF+  LL +
Sbjct:   15 STTKSSSSYPSQSTASCPPSSRRSSLPTMTQLLAGLDMFLHLCAPPGKYRIIRILGFYYITARIFTTFIVALLFA 89
The following BLAST results are available for this feature:
BLAST of NO18G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23470.13.100e-1461.33hypothetical protein Naga_100651g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL011nonsL011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR042ngnoR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02630.1NO18G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675063gene_10910Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100651g3gene6984Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02630.1NO18G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02630 ID=NO18G02630|Name=NO18G02630|organism=Nannochloropsis oceanica|type=gene|length=956bp
ACTGCAGCACAACCACCACCATCTCAACCACCGCTACCATCTTCACCACC
ATGACTTCCTCTACTTCCAATCCAGCTGCGGCCTCTTCGTACACCGCGCC
TTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTCCGACGACGAAAGAACTGC
TCGCGGGCTTGGATATGTTCCTCCATTTGTGTGCCCCGCCTGGCAAATAC
CGATTGGTGCGGATTTTGGGCTTTTATTATATCATGACACGCATCTTTCT
CACCTTTGTGGCAACGCTCTTGgtaagaaagacggagggctaggagagag
ggagggagagagggcgcttgttcccttcctttttgggtccatcatcgaag
gtctcccaccccatccttccttctccattttttcccaccaccttatagCT
TTCCACACTAGGTCAACTCATTCCTGCGCTCAAGCCGTCCCTTCGCACTG
TTCTCATGAAAGGAGGGTGCGTACCGCGAGACACAATCACACAGCGTTAC
CAGATTCCCGTACTCTAGAGGAAGAGGACAGTGGGAGGGAGGAAGGAAGG
GAAGGAGAGATGAATGGCAAAAGTATAAAGTAGTGTTTATTGAGAAAGTG
CTCATGTCACAAGGAATAGAAATAGAGCGGTAGTGCCAGGTCTTGCAAAA
GGGAAGGTGTTGGCGAAGAAGAGGGGAGGGTAGGGGGTTAGTGAAGGTGT
CCTGAGGTCGTGGTTGTGGTGTGTTTCTTGGATTGGCACGAAGAGGGAGA
TTAGGAAGAGATTAATTATATAGGTATAGTGGAAGAAGGGCAAGGGAGGG
AGGGCAAGAGGGGCATGGTGTGTAAATGGATGAAGGGCAGGTGAATTGTC
GGTGTCAAAAGAGATGAAAAATAACGAGAGAGCAAGACGGAGAAGAAAAT
GACGGAGAGCATCGAAGAAATTTTAAAAGCAAAAATGAAATACCAAAAGG
GTAGAC
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protein sequence of NO18G02630.1

>NO18G02630.1-protein ID=NO18G02630.1-protein|Name=NO18G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MTSSTSNPAAASSYTAPSAPRARRSSLPTTKELLAGLDMFLHLCAPPGKY
RLVRILGFYYIMTRIFLTFVATLLLSTLGQLIPALKPSLRTVLMKGGCVP
RDTITQRYQIPVL*
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Synonyms
Publications