NO18G02630.1, NO18G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02630.1
Unique NameNO18G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length830
Alignment locationchr18:858028..858983 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:858028..858983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02630.1 vs.
Match: EWM23470.1 (hypothetical protein Naga_100651g3 [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 1.100e-14
Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 0 
Query:    3 SSTSNPAAASSYTAPSAPRARRSSLPTTKELLAGLDMFLHLCAPPGKYRLVRILGFYYIMTRIFLTFVATLLLS 77
            SS+S P   S  TA   P +RRSSLPT  +LLAGLDMFLHLCAPPGKYR++RILGFYYI  RIF TF+  LL +
Sbjct:   19 SSSSYP---SQSTASCPPSSRRSSLPTMTQLLAGLDMFLHLCAPPGKYRIIRILGFYYITARIFTTFIVALLFA 89
The following BLAST results are available for this feature:
BLAST of NO18G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23470.11.100e-1466.22hypothetical protein Naga_100651g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02630NO18G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02630.1NO18G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02630.1.cds1NO18G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02630.1.cds2NO18G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02630.1 ID=NO18G02630.1|Name=NO18G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=830bp
ACTGCAGCACAACCACCACCATCTCAACCACCGCTACCATCTTCACCACC
ATGACTTCCTCTACTTCCAATCCAGCTGCGGCCTCTTCGTACACCGCGCC
TTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTCCGACGACGAAAGAACTGC
TCGCGGGCTTGGATATGTTCCTCCATTTGTGTGCCCCGCCTGGCAAATAC
CGATTGGTGCGGATTTTGGGCTTTTATTATATCATGACACGCATCTTTCT
CACCTTTGTGGCAACGCTCTTGCTTTCCACACTAGGTCAACTCATTCCTG
CGCTCAAGCCGTCCCTTCGCACTGTTCTCATGAAAGGAGGGTGCGTACCG
CGAGACACAATCACACAGCGTTACCAGATTCCCGTACTCTAGAGGAAGAG
GACAGTGGGAGGGAGGAAGGAAGGGAAGGAGAGATGAATGGCAAAAGTAT
AAAGTAGTGTTTATTGAGAAAGTGCTCATGTCACAAGGAATAGAAATAGA
GCGGTAGTGCCAGGTCTTGCAAAAGGGAAGGTGTTGGCGAAGAAGAGGGG
AGGGTAGGGGGTTAGTGAAGGTGTCCTGAGGTCGTGGTTGTGGTGTGTTT
CTTGGATTGGCACGAAGAGGGAGATTAGGAAGAGATTAATTATATAGGTA
TAGTGGAAGAAGGGCAAGGGAGGGAGGGCAAGAGGGGCATGGTGTGTAAA
TGGATGAAGGGCAGGTGAATTGTCGGTGTCAAAAGAGATGAAAAATAACG
AGAGAGCAAGACGGAGAAGAAAATGACGGAGAGCATCGAAGAAATTTTAA
AAGCAAAAATGAAATACCAAAAGGGTAGAC
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protein sequence of NO18G02630.1

>NO18G02630.1-protein ID=NO18G02630.1-protein|Name=NO18G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MTSSTSNPAAASSYTAPSAPRARRSSLPTTKELLAGLDMFLHLCAPPGKY
RLVRILGFYYIMTRIFLTFVATLLLSTLGQLIPALKPSLRTVLMKGGCVP
RDTITQRYQIPVL*
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mRNA from alignment at chr18:858028..858983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02630.1 ID=NO18G02630.1|Name=NO18G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=956bp|location=Sequence derived from alignment at chr18:858028..858983- (Nannochloropsis oceanica)
ACTGCAGCACAACCACCACCATCTCAACCACCGCTACCATCTTCACCACC
ATGACTTCCTCTACTTCCAATCCAGCTGCGGCCTCTTCGTACACCGCGCC
TTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTCCGACGACGAAAGAACTGC
TCGCGGGCTTGGATATGTTCCTCCATTTGTGTGCCCCGCCTGGCAAATAC
CGATTGGTGCGGATTTTGGGCTTTTATTATATCATGACACGCATCTTTCT
CACCTTTGTGGCAACGCTCTTGGTAAGAAAGACGGAGGGCTAGGAGAGAG
GGAGGGAGAGAGGGCGCTTGTTCCCTTCCTTTTTGGGTCCATCATCGAAG
GTCTCCCACCCCATCCTTCCTTCTCCATTTTTTCCCACCACCTTATAGCT
TTCCACACTAGGTCAACTCATTCCTGCGCTCAAGCCGTCCCTTCGCACTG
TTCTCATGAAAGGAGGGTGCGTACCGCGAGACACAATCACACAGCGTTAC
CAGATTCCCGTACTCTAGAGGAAGAGGACAGTGGGAGGGAGGAAGGAAGG
GAAGGAGAGATGAATGGCAAAAGTATAAAGTAGTGTTTATTGAGAAAGTG
CTCATGTCACAAGGAATAGAAATAGAGCGGTAGTGCCAGGTCTTGCAAAA
GGGAAGGTGTTGGCGAAGAAGAGGGGAGGGTAGGGGGTTAGTGAAGGTGT
CCTGAGGTCGTGGTTGTGGTGTGTTTCTTGGATTGGCACGAAGAGGGAGA
TTAGGAAGAGATTAATTATATAGGTATAGTGGAAGAAGGGCAAGGGAGGG
AGGGCAAGAGGGGCATGGTGTGTAAATGGATGAAGGGCAGGTGAATTGTC
GGTGTCAAAAGAGATGAAAAATAACGAGAGAGCAAGACGGAGAAGAAAAT
GACGGAGAGCATCGAAGAAATTTTAAAAGCAAAAATGAAATACCAAAAGG
GTAGAC
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Coding sequence (CDS) from alignment at chr18:858028..858983-

>NO18G02630.1 ID=NO18G02630.1|Name=NO18G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at chr18:858028..858983- (Nannochloropsis oceanica)
ATGACTTCCTCTACTTCCAATCCAGCTGCGGCCTCTTCGTACACCGCGCC
TTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTCCGACGACGAAAGAACTGC
TCGCGGGCTTGGATATGTTCCTCCATTTGTGTGCCCCGCCTGGCAAATAC
CGATTGGTGCGGATTTTGGGCTTTTATTATATCATGACACGCATCTTTCT
CACCTTTGTGGCAACGCTCTTGCTTTCCACACTAGGTCAACTCATTCCTG
CGCTCAAGCCGTCCCTTCGCACTGTTCTCATGAAAGGAGGGTGCGTACCG
CGAGACACAATCACACAGCGTTACCAGATTCCCGTACTCTAG
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Synonyms
Publications