NO18G02600, NO18G02600 (gene) Nannochloropsis oceanica

Overview
NameNO18G02600
Unique NameNO18G02600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length645
Alignment locationchr18:845818..846462 +

Link to JBrowse

Properties
Property NameValue
DescriptionAmine oxidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:845818..846462 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005507copper ion binding
GO:0008131primary amine oxidase activity
GO:0048038quinone binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0009308amine metabolic process
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036460Cu_amine_oxidase_C_sf
IPR000269Cu_amine_oxidase
IPR015798Cu_amine_oxidase_C
Homology
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: EFJ19345.1 (hypothetical protein SELMODRAFT_153358 [Selaginella moellendorffii])

HSP 1 Score: 102.8 bits (255), Expect = 6.900e-19
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL 101
            R + YRLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L +GCDCLGHI Y DA L
Sbjct:  275 RSVAYRLSFVEMVVPYGDPLEPHYRKNAFDAGEDGLGKNAHSLKLGCDCLGHIKYFDAFL 334
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_002977869.1 (uncharacterized protein LOC9657521 isoform X1 [Selaginella moellendorffii] >XP_024538519.1 uncharacterized protein LOC9657521 isoform X1 [Selaginella moellendorffii] >XP_024538520.1 uncharacterized protein LOC9657521 isoform X1 [Selaginella moellendorffii] >XP_024538521.1 uncharacterized protein LOC9657521 isoform X1 [Selaginella moellendorffii] >EFJ21207.1 hypothetical protein SELMODRAFT_443642 [Selaginella moellendorffii])

HSP 1 Score: 102.8 bits (255), Expect = 6.900e-19
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL 101
            R + YRLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L +GCDCLGHI Y DA L
Sbjct:  385 RSVAYRLSFVEMVVPYGDPLEPHYRKNAFDAGEDGLGKNAHSLKLGCDCLGHIKYFDAFL 444
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_024538522.1 (uncharacterized protein LOC9657521 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 102.8 bits (255), Expect = 6.900e-19
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL 101
            R + YRLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L +GCDCLGHI Y DA L
Sbjct:  385 RSVAYRLSFVEMVVPYGDPLEPHYRKNAFDAGEDGLGKNAHSLKLGCDCLGHIKYFDAFL 444
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_024540285.1 (uncharacterized protein LOC9634796 isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 102.8 bits (255), Expect = 6.900e-19
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL 101
            R + YRLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L +GCDCLGHI Y DA L
Sbjct:  385 RSVAYRLSFVEMVVPYGDPLEPHYRKNAFDAGEDGLGKNAHSLKLGCDCLGHIKYFDAFL 444
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_024540286.1 (uncharacterized protein LOC9634796 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 102.8 bits (255), Expect = 6.900e-19
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL 101
            R + YRLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L +GCDCLGHI Y DA L
Sbjct:  385 RSVAYRLSFVEMVVPYGDPLEPHYRKNAFDAGEDGLGKNAHSLKLGCDCLGHIKYFDAFL 444
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_021650373.1 (uncharacterized protein LOC110642586 isoform X3 [Hevea brasiliensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.200e-18
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDAN 100
            RP+ +RLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L  GCDCLGHI Y DA+
Sbjct:  394 RPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGHIKYFDAH 452
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_021650372.1 (uncharacterized protein LOC110642586 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.200e-18
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDAN 100
            RP+ +RLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L  GCDCLGHI Y DA+
Sbjct:  394 RPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGHIKYFDAH 452
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_021650371.1 (uncharacterized protein LOC110642586 isoform X1 [Hevea brasiliensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.200e-18
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDAN 100
            RP+ +RLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L  GCDCLGHI Y DA+
Sbjct:  394 RPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGHIKYFDAH 452
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: XP_002448036.1 (uncharacterized protein LOC8073581 [Sorghum bicolor] >EES12364.1 hypothetical protein SORBI_3006G119200 [Sorghum bicolor])

HSP 1 Score: 101.7 bits (252), Expect = 1.500e-18
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDAN 100
            RPI +RLSF EMVVPYGDP+ PHY+KNAFDAGEDGLG NAH L  GCDCLG+I Y DA+
Sbjct:  394 RPIAHRLSFVEMVVPYGDPSEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAH 452
[Close]
BLAST of NO18G02600 vs. NCBI_GenBank
Match: BAJ87935.1 (predicted protein, partial [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 101.7 bits (252), Expect = 1.500e-18
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDAN 100
            RPI +RLSF EMVVPYGDP+ PHY+KNAFDAGEDGLG NAH L  GCDCLG+I Y DA+
Sbjct:  137 RPIAHRLSFVEMVVPYGDPSEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAH 195
The following BLAST results are available for this feature:
BLAST of NO18G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EFJ19345.16.900e-1976.67hypothetical protein SELMODRAFT_153358 [Selaginell... [more]
XP_002977869.16.900e-1976.67uncharacterized protein LOC9657521 isoform X1 [Sel... [more]
XP_024538522.16.900e-1976.67uncharacterized protein LOC9657521 isoform X2 [Sel... [more]
XP_024540285.16.900e-1976.67uncharacterized protein LOC9634796 isoform X1 [Sel... [more]
XP_024540286.16.900e-1976.67uncharacterized protein LOC9634796 isoform X2 [Sel... [more]
XP_021650373.11.200e-1876.27uncharacterized protein LOC110642586 isoform X3 [H... [more]
XP_021650372.11.200e-1876.27uncharacterized protein LOC110642586 isoform X2 [H... [more]
XP_021650371.11.200e-1876.27uncharacterized protein LOC110642586 isoform X1 [H... [more]
XP_002448036.11.500e-1876.27uncharacterized protein LOC8073581 [Sorghum bicolo... [more]
BAJ87935.11.500e-1876.27predicted protein, partial [Hordeum vulgare subsp.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL011nonsL011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR042ngnoR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02600.1NO18G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613155gene_10905Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02600.1NO18G02600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02600 ID=NO18G02600|Name=NO18G02600|organism=Nannochloropsis oceanica|type=gene|length=645bp
ATGATTACAAGGAGCTTGAAGTCCGCTTTATATTCATGTGTGACACGCCA
GAAAGAGCTGGTTCTGGCCGATAAGATGACCGGCTTTAATGACACGCTCA
AGgtacgaagggaggacaagaagcacgaaaaggctccattgacccaatcc
accaccaagcacaactccctccttcccgccctccctccctccctcgctcc
ctctctccctccctccctacccgaccacctccagGCGGCAGGCAGCCTCA
TGCGTCCCATCCACTACCGGCTGTCGTTCGCCGAGATGGTGGTGCCTTAC
GGGGACCCAGCCTACCCCCACTACAAGAAGAACGCCTTTGATGCCGGCGA
GGACGgtgcatccctccctccttccttcctttcctccctccctccttcct
tcctttcctccatccttacttcttatcgcagcctacaggtgcacttgcca
cctgtctcctaggtgtcacctctctatcctcgctacctctcgctcttttc
ttccctcccctccctttccccctccctccctttagGCCTGGGCTGTAACG
CGCATTTCCTCTCCGTGGGCTGCGACTGCCTGGGGCATATCTACTACCTC
GACGCCAACCTAGGGCCTCTGGCACGTACGTACTCAGACGACTAG
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protein sequence of NO18G02600.1

>NO18G02600.1-protein ID=NO18G02600.1-protein|Name=NO18G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MITRSLKSALYSCVTRQKELVLADKMTGFNDTLKAAGSLMRPIHYRLSFA
EMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL
GPLARTYSDD*
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Synonyms
Publications