NO18G02600.1, NO18G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02600.1
Unique NameNO18G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length333
Alignment locationchr18:845818..846462 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:845818..846462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02600.1 vs.
Match: XP_024540285.1 (uncharacterized protein LOC9634796 isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 102.8 bits (255), Expect = 6.900e-19
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   41 RPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL 101
            R + YRLSF EMVVPYGDP  PHY+KNAFDAGEDGLG NAH L +GCDCLGHI Y DA L
Sbjct:  385 RSVAYRLSFVEMVVPYGDPLEPHYRKNAFDAGEDGLGKNAHSLKLGCDCLGHIKYFDAFL 444
The following BLAST results are available for this feature:
BLAST of NO18G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024540285.16.900e-1976.67uncharacterized protein LOC9634796 isoform X1 [Sel... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02600NO18G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02600.1NO18G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02600.1.cds1NO18G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02600.1.cds2NO18G02600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02600.1.cds3NO18G02600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02600.1 ID=NO18G02600.1|Name=NO18G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGATTACAAGGAGCTTGAAGTCCGCTTTATATTCATGTGTGACACGCCA
GAAAGAGCTGGTTCTGGCCGATAAGATGACCGGCTTTAATGACACGCTCA
AGGCGGCAGGCAGCCTCATGCGTCCCATCCACTACCGGCTGTCGTTCGCC
GAGATGGTGGTGCCTTACGGGGACCCAGCCTACCCCCACTACAAGAAGAA
CGCCTTTGATGCCGGCGAGGACGGCCTGGGCTGTAACGCGCATTTCCTCT
CCGTGGGCTGCGACTGCCTGGGGCATATCTACTACCTCGACGCCAACCTA
GGGCCTCTGGCACGTACGTACTCAGACGACTAG
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protein sequence of NO18G02600.1

>NO18G02600.1-protein ID=NO18G02600.1-protein|Name=NO18G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MITRSLKSALYSCVTRQKELVLADKMTGFNDTLKAAGSLMRPIHYRLSFA
EMVVPYGDPAYPHYKKNAFDAGEDGLGCNAHFLSVGCDCLGHIYYLDANL
GPLARTYSDD*
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mRNA from alignment at chr18:845818..846462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02600.1 ID=NO18G02600.1|Name=NO18G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=645bp|location=Sequence derived from alignment at chr18:845818..846462+ (Nannochloropsis oceanica)
ATGATTACAAGGAGCTTGAAGTCCGCTTTATATTCATGTGTGACACGCCA
GAAAGAGCTGGTTCTGGCCGATAAGATGACCGGCTTTAATGACACGCTCA
AGGTACGAAGGGAGGACAAGAAGCACGAAAAGGCTCCATTGACCCAATCC
ACCACCAAGCACAACTCCCTCCTTCCCGCCCTCCCTCCCTCCCTCGCTCC
CTCTCTCCCTCCCTCCCTACCCGACCACCTCCAGGCGGCAGGCAGCCTCA
TGCGTCCCATCCACTACCGGCTGTCGTTCGCCGAGATGGTGGTGCCTTAC
GGGGACCCAGCCTACCCCCACTACAAGAAGAACGCCTTTGATGCCGGCGA
GGACGGTGCATCCCTCCCTCCTTCCTTCCTTTCCTCCCTCCCTCCTTCCT
TCCTTTCCTCCATCCTTACTTCTTATCGCAGCCTACAGGTGCACTTGCCA
CCTGTCTCCTAGGTGTCACCTCTCTATCCTCGCTACCTCTCGCTCTTTTC
TTCCCTCCCCTCCCTTTCCCCCTCCCTCCCTTTAGGCCTGGGCTGTAACG
CGCATTTCCTCTCCGTGGGCTGCGACTGCCTGGGGCATATCTACTACCTC
GACGCCAACCTAGGGCCTCTGGCACGTACGTACTCAGACGACTAG
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Coding sequence (CDS) from alignment at chr18:845818..846462+

>NO18G02600.1 ID=NO18G02600.1|Name=NO18G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at chr18:845818..846462+ (Nannochloropsis oceanica)
ATGATTACAAGGAGCTTGAAGTCCGCTTTATATTCATGTGTGACACGCCA
GAAAGAGCTGGTTCTGGCCGATAAGATGACCGGCTTTAATGACACGCTCA
AGGCGGCAGGCAGCCTCATGCGTCCCATCCACTACCGGCTGTCGTTCGCC
GAGATGGTGGTGCCTTACGGGGACCCAGCCTACCCCCACTACAAGAAGAA
CGCCTTTGATGCCGGCGAGGACGGCCTGGGCTGTAACGCGCATTTCCTCT
CCGTGGGCTGCGACTGCCTGGGGCATATCTACTACCTCGACGCCAACCTA
GGGCCTCTGGCACGTACGTACTCAGACGACTAG
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Synonyms
Publications